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Dual affine gap penalties

enhancement

Status: Open.

#23 In torognes/swipe;

· torognes opened on May 23, 2014

Improve checking of FASTA-formatted files and handle lines starting with #

enhancement

Status: Open.

#21 In torognes/swipe;

· torognes opened on May 6, 2014

Output results in SAM or BAM format

enhancement

Status: Open.

#19 In torognes/swipe;

· torognes opened on Mar 27, 2014

Use a FASTQ file as query input

enhancement

Status: Open.

#18 In torognes/swipe;

· torognes opened on Mar 27, 2014

mpiswipe won't run with some variants of MPI

enhancement

Status: Open.

#17 In torognes/swipe;

· torognes opened on Mar 10, 2014

Documentation!

enhancement

Status: Open.

#15 In torognes/swipe;

· torognes opened on Feb 13, 2014

Fallback to non-SIMD code if SIMD not present (or as an option)

enhancement

Status: Open.

#14 In torognes/swipe;

· torognes opened on Feb 13, 2014

Show all significant alignments per sequence, not just the single best

enhancement

Status: Open.

#13 In torognes/swipe;

· torognes opened on Feb 13, 2014

Allow zero gap opening or gap extension penalty

enhancement

Status: Open.

#12 In torognes/swipe;

· torognes opened on Feb 13, 2014

Optionally output the raw alignment score, not just the bit score

enhancement

Status: Open.

#11 In torognes/swipe;

· torognes opened on Jan 15, 2014

Add option to use the new sequence length adjustment statistics (FSC) in BLAST 2.2.26 and later

enhancement

Status: Open.

#8 In torognes/swipe;

· torognes opened on Apr 30, 2013

Adapt to AVX2

enhancement

Status: Open.

#6 In torognes/swipe;

· torognes opened on Feb 19, 2013