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setup and usages were updated.

Feb 6, 2024

5e1c6a6 · Feb 6, 2024

This branch is up to date with KunDHuang/KunDH-2024-CRM-MSM_metagenomics:main.

Name		Name	Last commit message	Last commit date
parent directory ..
alpha_diversity_plots.png		alpha_diversity_plots.png	doc for alpha diversity has been added.	Oct 18, 2023
beta_diversity_R_outputs.png		beta_diversity_R_outputs.png	added tutorial for R-based beta diversity analysis	Oct 31, 2023
copresence_plot.jpg		copresence_plot.jpg	figures downsized	Jan 25, 2024
cumulative_distribution_functions.jpg		cumulative_distribution_functions.jpg	figures downsized	Jan 25, 2024
global_presence.jpg		global_presence.jpg	figures downsized	Jan 25, 2024
graphical_abstract.jpg		graphical_abstract.jpg	setup and usages were updated.	Feb 6, 2024
mosaic_plot.png		mosaic_plot.png	added mosaic plot tutorial	Dec 3, 2023
mvpp_pcoa.png		mvpp_pcoa.png	added python-based beta diversity analysis	Nov 1, 2023
npartner_lefse_biomarkers.jpg		npartner_lefse_biomarkers.jpg	downsized some figs	Dec 21, 2023
pcoa_w_sideplot.png		pcoa_w_sideplot.png	added PCoA toturial for R+Python method	Nov 5, 2023
prevotellaceae_relab.jpg		prevotellaceae_relab.jpg	figures downsized	Jan 25, 2024
roc_auc_machine_learning.jpg		roc_auc_machine_learning.jpg	downsized some figs	Dec 21, 2023
rocauc_stdv_plot.jpg		rocauc_stdv_plot.jpg	downsized some figs	Dec 21, 2023
shared_biomarkers.jpg		shared_biomarkers.jpg	added tutorial for lollipop plot.	Dec 21, 2023
upset_plot.jpg		upset_plot.jpg	upset plot changed	Dec 20, 2023