diff --git a/stjude_warden_bam/dxapp.json b/stjude_warden_bam/dxapp.json index b137626..b530f93 100644 --- a/stjude_warden_bam/dxapp.json +++ b/stjude_warden_bam/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN [BAM] (St. Jude)", "summary": "This app runs htseq-count and voom/limma on RNA-SEQ data", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "BAM_FILES", diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_bedgraph_to_bigwig/dxapp.json b/stjude_warden_bam/resources/app_data/internal_source/warden_bedgraph_to_bigwig/dxapp.json index a437120..8cb8173 100644 --- a/stjude_warden_bam/resources/app_data/internal_source/warden_bedgraph_to_bigwig/dxapp.json +++ b/stjude_warden_bam/resources/app_data/internal_source/warden_bedgraph_to_bigwig/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: Generate BigWig", "summary": "Generate BigWig files from bed coverage file", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "bedgraph_file", diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_bw_to_viewer/dxapp.json b/stjude_warden_bam/resources/app_data/internal_source/warden_bw_to_viewer/dxapp.json index d8a8c78..c84cb27 100644 --- a/stjude_warden_bam/resources/app_data/internal_source/warden_bw_to_viewer/dxapp.json +++ b/stjude_warden_bam/resources/app_data/internal_source/warden_bw_to_viewer/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: BigWig viewer", "summary": "Generate bookmarks to Protein Paint viewer for BigWig Files", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "viewer", diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_bw_to_viewer/src/warden_bw_to_viewer.sh b/stjude_warden_bam/resources/app_data/internal_source/warden_bw_to_viewer/src/warden_bw_to_viewer.sh index ac6075c..de43040 100644 --- a/stjude_warden_bam/resources/app_data/internal_source/warden_bw_to_viewer/src/warden_bw_to_viewer.sh +++ b/stjude_warden_bam/resources/app_data/internal_source/warden_bw_to_viewer/src/warden_bw_to_viewer.sh @@ -1,6 +1,6 @@ #!/bin/bash # shellcheck disable=SC2154 -# warden_bw_to_viewer 1.1.0 +# warden_bw_to_viewer 1.2.0 set -e -o -x main() { diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_combine_counts/dxapp.json b/stjude_warden_bam/resources/app_data/internal_source/warden_combine_counts/dxapp.json index 1729fde..ceb0d40 100644 --- a/stjude_warden_bam/resources/app_data/internal_source/warden_combine_counts/dxapp.json +++ b/stjude_warden_bam/resources/app_data/internal_source/warden_combine_counts/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: Combine HTSeq Counts", "summary": "Combine HTSeq Count files into a single file", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "count_files", diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_genome_coverage_bed/dxapp.json b/stjude_warden_bam/resources/app_data/internal_source/warden_genome_coverage_bed/dxapp.json index 3d8f371..a8af907 100644 --- a/stjude_warden_bam/resources/app_data/internal_source/warden_genome_coverage_bed/dxapp.json +++ b/stjude_warden_bam/resources/app_data/internal_source/warden_genome_coverage_bed/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: Genome coverage analysis", "summary": "Creates coverage files (BED) of alignment files (BAM)", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "input_bam", diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_htseq_count/dxapp.json b/stjude_warden_bam/resources/app_data/internal_source/warden_htseq_count/dxapp.json index 5278c67..cb09300 100644 --- a/stjude_warden_bam/resources/app_data/internal_source/warden_htseq_count/dxapp.json +++ b/stjude_warden_bam/resources/app_data/internal_source/warden_htseq_count/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: HTSeq-Count", "summary": "Generate per gene read (pair) counts", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "input_bam", diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json b/stjude_warden_bam/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json index b0f8c63..47eff64 100644 --- a/stjude_warden_bam/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json +++ b/stjude_warden_bam/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: Simple Differential Expression", "summary": "Comparison between conditions. Useful for when one condition has less three samples", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "input_count_file", diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_simple_differential_expression/src/warden_simple_differential_expression.sh b/stjude_warden_bam/resources/app_data/internal_source/warden_simple_differential_expression/src/warden_simple_differential_expression.sh index c4f2edc..870b592 100644 --- a/stjude_warden_bam/resources/app_data/internal_source/warden_simple_differential_expression/src/warden_simple_differential_expression.sh +++ b/stjude_warden_bam/resources/app_data/internal_source/warden_simple_differential_expression/src/warden_simple_differential_expression.sh @@ -1,5 +1,5 @@ #!/bin/bash -# warden_simple_differential_expression 1.1.0 +# warden_simple_differential_expression 1.2.0 # shellcheck disable=SC2154 set -e -x -o diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_voom_limma/dxapp.json b/stjude_warden_bam/resources/app_data/internal_source/warden_voom_limma/dxapp.json index 26c107d..fa94a25 100644 --- a/stjude_warden_bam/resources/app_data/internal_source/warden_voom_limma/dxapp.json +++ b/stjude_warden_bam/resources/app_data/internal_source/warden_voom_limma/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: LIMMA", "summary": "Run VOOM normalization and LIMMA analysis", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "input_count_file", diff --git a/stjude_warden_bam/resources/app_data/internal_source/warden_voom_limma/src/warden_voom_limma.sh b/stjude_warden_bam/resources/app_data/internal_source/warden_voom_limma/src/warden_voom_limma.sh index e9313e2..f9c9871 100644 --- a/stjude_warden_bam/resources/app_data/internal_source/warden_voom_limma/src/warden_voom_limma.sh +++ b/stjude_warden_bam/resources/app_data/internal_source/warden_voom_limma/src/warden_voom_limma.sh @@ -1,5 +1,5 @@ #!/bin/bash -# warden_voom_limma 1.1.0 +# warden_voom_limma 1.2.0 # shellcheck disable=SC2154 set -e -x -o diff --git a/stjude_warden_bam/resources/usr/bin/create_workflow.py b/stjude_warden_bam/resources/usr/bin/create_workflow.py index a145243..47e967d 100755 --- a/stjude_warden_bam/resources/usr/bin/create_workflow.py +++ b/stjude_warden_bam/resources/usr/bin/create_workflow.py @@ -1,5 +1,5 @@ #!/usr/bin/env python3 -# warden_python 1.1.0 +# warden_python 1.2.0 import sys diff --git a/stjude_warden_counts/dxapp.json b/stjude_warden_counts/dxapp.json index d62a212..add3c8d 100644 --- a/stjude_warden_counts/dxapp.json +++ b/stjude_warden_counts/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN [Counts] (St. Jude)", "summary": "This app runs voom/limma differential expression on RNA-SEQ data", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "COUNT_FILES", diff --git a/stjude_warden_counts/resources/app_data/internal_source/warden_combine_counts/dxapp.json b/stjude_warden_counts/resources/app_data/internal_source/warden_combine_counts/dxapp.json index 1729fde..ceb0d40 100644 --- a/stjude_warden_counts/resources/app_data/internal_source/warden_combine_counts/dxapp.json +++ b/stjude_warden_counts/resources/app_data/internal_source/warden_combine_counts/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: Combine HTSeq Counts", "summary": "Combine HTSeq Count files into a single file", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "count_files", diff --git a/stjude_warden_counts/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json b/stjude_warden_counts/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json index b0f8c63..47eff64 100644 --- a/stjude_warden_counts/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json +++ b/stjude_warden_counts/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: Simple Differential Expression", "summary": "Comparison between conditions. Useful for when one condition has less three samples", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "input_count_file", diff --git a/stjude_warden_counts/resources/app_data/internal_source/warden_simple_differential_expression/src/warden_simple_differential_expression.sh b/stjude_warden_counts/resources/app_data/internal_source/warden_simple_differential_expression/src/warden_simple_differential_expression.sh index c4f2edc..870b592 100644 --- a/stjude_warden_counts/resources/app_data/internal_source/warden_simple_differential_expression/src/warden_simple_differential_expression.sh +++ b/stjude_warden_counts/resources/app_data/internal_source/warden_simple_differential_expression/src/warden_simple_differential_expression.sh @@ -1,5 +1,5 @@ #!/bin/bash -# warden_simple_differential_expression 1.1.0 +# warden_simple_differential_expression 1.2.0 # shellcheck disable=SC2154 set -e -x -o diff --git a/stjude_warden_counts/resources/app_data/internal_source/warden_voom_limma/dxapp.json b/stjude_warden_counts/resources/app_data/internal_source/warden_voom_limma/dxapp.json index 26c107d..fa94a25 100644 --- a/stjude_warden_counts/resources/app_data/internal_source/warden_voom_limma/dxapp.json +++ b/stjude_warden_counts/resources/app_data/internal_source/warden_voom_limma/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: LIMMA", "summary": "Run VOOM normalization and LIMMA analysis", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "input_count_file", diff --git a/stjude_warden_counts/resources/app_data/internal_source/warden_voom_limma/src/warden_voom_limma.sh b/stjude_warden_counts/resources/app_data/internal_source/warden_voom_limma/src/warden_voom_limma.sh index e9313e2..f9c9871 100644 --- a/stjude_warden_counts/resources/app_data/internal_source/warden_voom_limma/src/warden_voom_limma.sh +++ b/stjude_warden_counts/resources/app_data/internal_source/warden_voom_limma/src/warden_voom_limma.sh @@ -1,5 +1,5 @@ #!/bin/bash -# warden_voom_limma 1.1.0 +# warden_voom_limma 1.2.0 # shellcheck disable=SC2154 set -e -x -o diff --git a/stjude_warden_counts/resources/usr/bin/create_workflow.py b/stjude_warden_counts/resources/usr/bin/create_workflow.py index 6d9505a..bf3c964 100755 --- a/stjude_warden_counts/resources/usr/bin/create_workflow.py +++ b/stjude_warden_counts/resources/usr/bin/create_workflow.py @@ -1,5 +1,5 @@ #!/usr/bin/env python3 -# warden_python 1.1.0 +# warden_python 1.2.0 import sys diff --git a/stjude_warden_fastq/dxapp.json b/stjude_warden_fastq/dxapp.json index fd3bdd0..a8148dd 100644 --- a/stjude_warden_fastq/dxapp.json +++ b/stjude_warden_fastq/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN [FastQ] (St. Jude)", "summary": "This app runs the STAR Aligner, htseq-count, and voom/limma on RNA-SEQ data", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "FASTQ_FILES", diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_bedgraph_to_bigwig/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_bedgraph_to_bigwig/dxapp.json index a437120..8cb8173 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_bedgraph_to_bigwig/dxapp.json +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_bedgraph_to_bigwig/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: Generate BigWig", "summary": "Generate BigWig files from bed coverage file", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "bedgraph_file", diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_bw_to_viewer/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_bw_to_viewer/dxapp.json index d8a8c78..c84cb27 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_bw_to_viewer/dxapp.json +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_bw_to_viewer/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: BigWig viewer", "summary": "Generate bookmarks to Protein Paint viewer for BigWig Files", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "viewer", diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_bw_to_viewer/src/warden_bw_to_viewer.sh b/stjude_warden_fastq/resources/app_data/internal_source/warden_bw_to_viewer/src/warden_bw_to_viewer.sh index ac6075c..de43040 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_bw_to_viewer/src/warden_bw_to_viewer.sh +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_bw_to_viewer/src/warden_bw_to_viewer.sh @@ -1,6 +1,6 @@ #!/bin/bash # shellcheck disable=SC2154 -# warden_bw_to_viewer 1.1.0 +# warden_bw_to_viewer 1.2.0 set -e -o -x main() { diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_counts/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_counts/dxapp.json index 1729fde..ceb0d40 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_counts/dxapp.json +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_counts/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: Combine HTSeq Counts", "summary": "Combine HTSeq Count files into a single file", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "count_files", diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_flagstat/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_flagstat/dxapp.json index 518e3a1..d4d2d24 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_flagstat/dxapp.json +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_flagstat/dxapp.json @@ -3,7 +3,7 @@ "title": "warden_combine_flagstat", "summary": "warden_combine_flagstat", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "flagstat_files", diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_sj_out/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_sj_out/dxapp.json index 3019683..bd0c105 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_sj_out/dxapp.json +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_sj_out/dxapp.json @@ -3,7 +3,7 @@ "title": "warden_combine_sj_out", "summary": "warden_combine_sj_out", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "sj_out_files", diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_sj_out/src/warden_combine_sj_out.sh b/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_sj_out/src/warden_combine_sj_out.sh index f7f2448..a1204d5 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_sj_out/src/warden_combine_sj_out.sh +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_combine_sj_out/src/warden_combine_sj_out.sh @@ -1,6 +1,6 @@ #!/bin/bash # shellcheck disable=SC2154 -# warden_combine_sj_out 1.1.0 +# warden_combine_sj_out 1.2.0 main() { wget -nv "https://github.com/arq5x/bedtools2/releases/download/v2.29.2/bedtools.static.binary" diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_fastqc/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_fastqc/dxapp.json index 921205f..4d02a15 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_fastqc/dxapp.json +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_fastqc/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: FASTQC", "summary": "FASTQC Analysis", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "fastq_input", diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_genome_coverage_bed/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_genome_coverage_bed/dxapp.json index 4768920..8bafd7f 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_genome_coverage_bed/dxapp.json +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_genome_coverage_bed/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: Genome coverage analysis", "summary": "Creates coverage files (BED) of alignment files (BAM)", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "input_bam", diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_htseq_count/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_htseq_count/dxapp.json index 5278c67..cb09300 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_htseq_count/dxapp.json +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_htseq_count/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: HTSeq-Count", "summary": "Generate per gene read (pair) counts", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "input_bam", diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_name_sort_bam/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_name_sort_bam/dxapp.json index 8b4b878..9b9fa67 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_name_sort_bam/dxapp.json +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_name_sort_bam/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: Sort BAM by name", "summary": "BAM Output generated in alignment phase is sorted by read name for analysis by HTSeq-count", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "input_bam", diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json index b0f8c63..47eff64 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_simple_differential_expression/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: Simple Differential Expression", "summary": "Comparison between conditions. Useful for when one condition has less three samples", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "input_count_file", diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_simple_differential_expression/src/warden_simple_differential_expression.sh b/stjude_warden_fastq/resources/app_data/internal_source/warden_simple_differential_expression/src/warden_simple_differential_expression.sh index c4f2edc..870b592 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_simple_differential_expression/src/warden_simple_differential_expression.sh +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_simple_differential_expression/src/warden_simple_differential_expression.sh @@ -1,5 +1,5 @@ #!/bin/bash -# warden_simple_differential_expression 1.1.0 +# warden_simple_differential_expression 1.2.0 # shellcheck disable=SC2154 set -e -x -o diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_star_aligner/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_star_aligner/dxapp.json index 3a503e3..1c192f2 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_star_aligner/dxapp.json +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_star_aligner/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: STAR Aligner", "summary": "Runs the STAR alignment program on input data", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "read_file1", diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_voom_limma/dxapp.json b/stjude_warden_fastq/resources/app_data/internal_source/warden_voom_limma/dxapp.json index 26c107d..fa94a25 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_voom_limma/dxapp.json +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_voom_limma/dxapp.json @@ -3,7 +3,7 @@ "title": "WARDEN: LIMMA", "summary": "Run VOOM normalization and LIMMA analysis", "dxapi": "1.0.0", - "version": "1.1.0", + "version": "1.2.0", "inputSpec": [ { "name": "input_count_file", diff --git a/stjude_warden_fastq/resources/app_data/internal_source/warden_voom_limma/src/warden_voom_limma.sh b/stjude_warden_fastq/resources/app_data/internal_source/warden_voom_limma/src/warden_voom_limma.sh index e9313e2..f9c9871 100644 --- a/stjude_warden_fastq/resources/app_data/internal_source/warden_voom_limma/src/warden_voom_limma.sh +++ b/stjude_warden_fastq/resources/app_data/internal_source/warden_voom_limma/src/warden_voom_limma.sh @@ -1,5 +1,5 @@ #!/bin/bash -# warden_voom_limma 1.1.0 +# warden_voom_limma 1.2.0 # shellcheck disable=SC2154 set -e -x -o diff --git a/stjude_warden_fastq/resources/usr/bin/create_workflow.py b/stjude_warden_fastq/resources/usr/bin/create_workflow.py index 5c8458b..fe8d16f 100755 --- a/stjude_warden_fastq/resources/usr/bin/create_workflow.py +++ b/stjude_warden_fastq/resources/usr/bin/create_workflow.py @@ -1,5 +1,5 @@ #!/usr/bin/env python3 -# warden_python 1.1.0 +# warden_python 1.2.0 import sys