diff --git a/bin/ROSE_main.py b/bin/ROSE_main.py index 9b57029..7e06cc0 100755 --- a/bin/ROSE_main.py +++ b/bin/ROSE_main.py @@ -236,7 +236,7 @@ def main(): help = "Enter a comma separated list of additional bam files to map to") parser.add_option("-c","--control", dest="control",nargs = 1, default=None, help = "bamfile to rank enhancer by") - parser.add_option("-s","--stitch", dest="stitch",nargs = 1, default=5000, + parser.add_option("-s","--stitch", dest="stitch",nargs = 1, default=12500, help = "Enter a max linking distance for stitching") parser.add_option("-t","--tss", dest="tss",nargs = 1, default=0, help = "Enter a distance from TSS to exclude. 0 = no TSS exclusion")