From 8249def4d86d0da9e14db3f81918c3e0ac65bd89 Mon Sep 17 00:00:00 2001 From: Jason Alan Fries Date: Fri, 6 Aug 2021 20:16:49 -0700 Subject: [PATCH] Update README.md Fixed URL link in manuscript citation. Added links to NER experiment scripts in manuscript branch --- README.md | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index c78fc5c..2da683b 100644 --- a/README.md +++ b/README.md @@ -30,6 +30,10 @@ Requirements: Python 3.6 or later. We recomend using `pip` to install `pip install -r requirements.txt` +## Experiments + +NER experiments from the manuscript are found [here](https://github.com/som-shahlab/trove/tree/manuscript/scripts). We are in the process of refactoring these for easier usage. + ## Contributions We welcome all contributions to the code base! Please submit a pull request and/or start a discussion on GitHub Issues. @@ -42,7 +46,7 @@ we would love to start a conversation around how to support sharing labelers in ## Citation If use Trove in your research, please cite us! -Fries, J.A., Steinberg, E., Khattar, S. et al. Ontology-driven weak supervision for clinical entity classification in electronic health records. Nat Commun 12, 2017 (2021). https://doi-org.stanford.idm.oclc.org/10.1038/s41467-021-22328-4 +Fries, J.A., Steinberg, E., Khattar, S. et al. [Ontology-driven weak supervision for clinical entity classification in electronic health records](https://www.nature.com/articles/s41467-021-22328-4). Nat Commun 12, 2017 (2021). https://doi.org/10.1038/s41467-021-22328-4 ``` @article{fries2021trove,