Small tweak

fgvieira · web-flow · commit efd5e5017162 · 2024-11-29T00:26:39.000+01:00
diff --git a/snakemake_wrapper_utils/samtools.py b/snakemake_wrapper_utils/samtools.py
@@ -29,7 +29,7 @@ def get_samtools_opts(
     if parse_threads:
         if is_arg("-@", extra) or is_arg("--threads", extra):
             sys.exit(
-                "You have specified number of threads (`-@/--threads`) in `params.extra`; please use only `threads`."
+                "You have specified number of threads (`-@/--threads`) in `params.extra`; this is automatically infered from `threads`."
             )
         samtools_opts += (
             ""

Original file line number	Diff line number	Diff line change
`@@ -29,7 +29,7 @@ def get_samtools_opts(`
`29`	`29`	`if parse_threads:`
`30`	`30`	`if is_arg("-@", extra) or is_arg("--threads", extra):`
`31`	`31`	`sys.exit(`
`32`		- "You have specified number of threads (`-@/--threads`) in `params.extra`; please use only `threads`."
	`32`	+ "You have specified number of threads (`-@/--threads`) in `params.extra`; this is automatically infered from `threads`."
`33`	`33`	`)`
`34`	`34`	`samtools_opts += (`
`35`	`35`	`""`