Automatically build a reference directory structure for a VEuPathDB group for use in Companion pipeline.
- Ensure Dependencies are installed.
- Create a params_default.config from the template params_default.example and fill out.
- Run the following on command line (see Nextflow docs for OPTIONS):
nextflow run reference_update.nf [OPTIONS]
- If successful, fully populated reference directory will be available at params.REFERENCE_PATH.
- AUGUSTUS
- Companion
- EuPathWS
- OrthoFinder
- Python 3
- SciPy