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@article{erdner2008,
  title = {Centers for {{Oceans}} and {{Human Health}}: A Unified Approach to the Challenge of Harmful Algal Blooms},
  shorttitle = {Centers for {{Oceans}} and {{Human Health}}},
  author = {Erdner, Deana L and Dyble, Julianne and Parsons, Michael L and Stevens, Richard C and Hubbard, Katherine A and Wrabel, Michele L and Moore, Stephanie K and Lefebvre, Kathi A and Anderson, Donald M and Bienfang, Paul and Bidigare, Robert R and Parker, Micaela S and Moeller, Peter and Brand, Larry E and Trainer, Vera L},
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}





@article{heisler2008,
  title = {Eutrophication and Harmful Algal Blooms: {{A}} Scientific Consensus},
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  author = {Heisler, J. and Glibert, P.M. and Burkholder, J.M. and Anderson, D.M. and Cochlan, W. and Dennison, W.C. and Dortch, Q. and Gobler, C.J. and Heil, C.A. and Humphries, E. and Lewitus, A. and Magnien, R. and Marshall, H.G. and Sellner, K. and Stockwell, D.A. and Stoecker, D.K. and Suddleson, M.},
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}





@article{morgan2009,
  title = {Firm-Level Economic Effects of {{HABS}}: {{A}} Tool for Business Loss Assessment},
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  journal = {Harmful Algae},
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  langid = {english}
}





@article{holland2020,
  title = {Is a Delay a Disaster? Economic Impacts of the Delay of the California Dungeness Crab Fishery Due to a Harmful Algal Bloom},
  shorttitle = {Is a Delay a Disaster?},
  author = {Holland, Daniel S. and Leonard, Jerry},
  year = {2020},
  month = sep,
  journal = {Harmful Algae},
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  pages = {101904},
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  doi = {10.1016/j.hal.2020.101904},
  langid = {english}
}





@article{anderson2008,
  title = {Harmful Algal Blooms and Eutrophication: {{Examining}} Linkages from Selected Coastal Regions of the {{United States}}},
  shorttitle = {Harmful Algal Blooms and Eutrophication},
  author = {Anderson, Donald M. and Burkholder, Joann M. and Cochlan, William P. and Glibert, Patricia M. and Gobler, Christopher J. and Heil, Cynthia A. and Kudela, Raphael M. and Parsons, Michael L. and Rensel, J. E. Jack and Townsend, David W. and Trainer, Vera L. and Vargo, Gabriel A.},
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}





@article{anderson2002,
  title = {Harmful Algal Blooms and Eutrophication: {{Nutrient}} Sources, Composition, and Consequences},
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  langid = {english}
}





@article{fu2012,
  title = {Global Change and the Future of Harmful Algal Blooms in the Ocean},
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}





@article{moore2008,
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@article{steffen2017,
  title = {Ecophysiological {{Examination}} of the {{Lake Erie Microcystis Bloom}} in 2014: {{Linkages}} between {{Biology}} and the {{Water Supply Shutdown}} of {{Toledo}}, {{OH}}},
  shorttitle = {Ecophysiological {{Examination}} of the {{Lake Erie}} {{{\emph{Microcystis}}}} {{Bloom}} in 2014},
  author = {Steffen, Morgan M. and Davis, Timothy W. and McKay, R. Michael L. and Bullerjahn, George S. and Krausfeldt, Lauren E. and Stough, Joshua M.A. and Neitzey, Michelle L. and Gilbert, Naomi E. and Boyer, Gregory L. and Johengen, Thomas H. and Gossiaux, Duane C. and Burtner, Ashley M. and Palladino, Danna and Rowe, Mark D. and Dick, Gregory J. and Meyer, Kevin A. and Levy, Shawn and Boone, Braden E. and Stumpf, Richard P. and Wynne, Timothy T. and Zimba, Paul V. and Gutierrez, Danielle and Wilhelm, Steven W.},
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  langid = {english}
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@article{boedecker2020,
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  author = {Boedecker, Ashlynn R. and Niewinski, Desi N. and Newell, Silvia E. and Chaffin, Justin D. and McCarthy, Mark J.},
  year = {2020},
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  pages = {920--932},
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  doi = {10.1016/j.jglr.2020.04.010},
  langid = {english}
}





@article{reynoso2019,
  title = {Bacterial Community Structure and Response to Nitrogen Amendments in {{Lake Shenandoah}} ({{VA}}, {{USA}})},
  author = {Reynoso, G. and Smith, M. R. and Holmes, C. P. and Keelan, C. R. and McGrath, S. E. and Alvarez, G. H. and Coceano, M. A. and Eldridge, K. A. and Fried, H. I. and Gilbert, N. E. and Harris, M. T. and Kohler, L. R. and Modolo, C. M. and Murray, E. A. and Polisetti, S. M. and Sales, D. J. and Walsh, E. S. and Steffen, M. M.},
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  volume = {80},
  number = {4},
  pages = {675--684},
  issn = {0273-1223, 1996-9732},
  doi = {10.2166/wst.2019.311},
  abstract = {Abstract             Microbial processes are critical to the function of freshwater ecosystems, yet we still do not fully understand the factors that shape freshwater microbial communities. Furthermore, freshwater ecosystems are particularly susceptible to effects of environmental change, including influx of exogenous nutrients such as nitrogen and phosphorus. To evaluate the impact of nitrogen loading on the microbial community structure of shallow freshwater lakes, water samples collected from Lake Shenandoah (Virginia, USA) were incubated with two concentrations of either ammonium, nitrate, or urea as a nitrogen source. The potential impact of these nitrogen compounds on the bacterial community structure was assessed via 16S rRNA amplicon sequencing. At the phylum level, the dominant taxa in Lake Shenandoah were comprised of Actinobacteria and Proteobacteria, which were not affected by exposure to the various nitrogen treatments. Overall, there was not a significant shift in the diversity of the bacterial community of Lake Shenandoah with the addition of nitrogen sources, indicating this shallow system may be constrained by other environmental factors.},
  langid = {english}
}





@article{steffen2012,
  title = {Comparative {{Metagenomics}} of {{Toxic Freshwater Cyanobacteria Bloom Communities}} on {{Two Continents}}},
  author = {Steffen, Morgan M. and Li, Zhou and Effler, T. Chad and Hauser, Loren J. and Boyer, Gregory L. and Wilhelm, Steven W.},
  editor = {Bertilsson, Stefan},
  year = {2012},
  month = aug,
  journal = {PLoS ONE},
  volume = {7},
  number = {8},
  pages = {e44002},
  issn = {1932-6203},
  doi = {10.1371/journal.pone.0044002},
  langid = {english},
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}





@article{li2018,
  title = {Minimap2: Pairwise Alignment for Nucleotide Sequences},
  shorttitle = {Minimap2},
  author = {Li, Heng},
  editor = {Birol, Inanc},
  year = {2018},
  month = sep,
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  volume = {34},
  number = {18},
  pages = {3094--3100},
  issn = {1367-4803, 1460-2059},
  doi = {10.1093/bioinformatics/bty191},
  langid = {english},
  file = {/Users/turner/Zotero/storage/RSBB55X9/Li - 2018 - Minimap2 pairwise alignment for nucleotide sequen.pdf}
}





@article{quinlan2010,
  title = {{{BEDTools}}: A Flexible Suite of Utilities for Comparing Genomic Features},
  shorttitle = {{{BEDTools}}},
  author = {Quinlan, Aaron R. and Hall, Ira M.},
  year = {2010},
  month = mar,
  journal = {Bioinformatics},
  volume = {26},
  number = {6},
  pages = {841--842},
  issn = {1460-2059, 1367-4803},
  doi = {10.1093/bioinformatics/btq033},
  langid = {english},
  file = {/Users/turner/Zotero/storage/3QZLPHVR/Quinlan and Hall - 2010 - BEDTools a flexible suite of utilities for compar.pdf}
}





@article{love2014,
  title = {Moderated Estimation of Fold Change and Dispersion for {{RNA-seq}} Data with {{DESeq2}}},
  author = {Love, Michael I and Huber, Wolfgang and Anders, Simon},
  year = {2014},
  month = dec,
  journal = {Genome Biology},
  volume = {15},
  number = {12},
  pages = {550},
  issn = {1474-760X},
  doi = {10.1186/s13059-014-0550-8},
  langid = {english},
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}





@article{cruaud2017,
  title = {Open the {{Sterivex}} Casing: {{An}} Easy and Effective Way to Improve {{DNA}} Extraction Yields},
  shorttitle = {Open the {{SterivexTM}} Casing},
  author = {Cruaud, Perrine and Vigneron, Adrien and Fradette, Marie-St{\'e}phanie and Charette, Steve J. and Rodriguez, Manuel J. and Dorea, Caetano C. and Culley, Alexander I.},
  year = {2017},
  journal = {Limnology and Oceanography: Methods},
  volume = {15},
  number = {12},
  pages = {1015--1020},
  issn = {1541-5856},
  doi = {10.1002/lom3.10221},
  abstract = {We describe an inexpensive, reliable, and easily executed improvement for the extraction of DNA from SterivexTM filter units, that involves the separation of the SterivexTM filter from its casing. Our study demonstrates that our modification of the original extraction protocol significantly increased DNA yields, with an average increase of 4.1-fold more DNA than with the standard approach. A comparison of the diversity after Illumina MiSeq sequencing of bacterial communities extracted with both the standard approach and the proposed one indicated that our modified protocol has no or little impact on the results. This protocol provides a relatively straight forward means to achieve higher yields of DNA from the extraction of SterivexTM cartridges without altering the community composition and will likely be of interest to a wide range of scientists that use techniques based on the recovery of DNA from filters.},
  langid = {english},
  annotation = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/lom3.10221},
  file = {/Users/turner/Zotero/storage/673F6YGG/Cruaud et al. - 2017 - Open the SterivexTM casing An easy and effective .pdf;/Users/turner/Zotero/storage/VIS8GCPE/lom3.html}
}