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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(Bam2Fastq)
export(DownloadBam)
export(DownloadFastq)
export(DownloadSRA)
export(ExportSeurat)
export(ExtractCBComposition)
export(ExtractCBDatasets)
export(ExtractCELLxGENEMeta)
export(ExtractGEOMeta)
export(ExtractHCAMeta)
export(ExtractPanglaoDBComposition)
export(ExtractPanglaoDBMeta)
export(ExtractRun)
export(ExtractZenodoMeta)
export(Fastq2R)
export(ImportSeurat)
export(ParseCBDatasets)
export(ParseCELLxGENE)
export(ParseGEO)
export(ParseHCA)
export(ParsePanglaoDB)
export(ParseZenodo)
export(RunCellRanger)
export(RunSTAR)
export(SCEAnnData)
export(SCELoom)
export(ShowCBDatasets)
export(ShowCELLxGENEDatasets)
export(ShowHCAProjects)
export(SplitSRA)
export(StatDBAttribute)
import(cellxgene.census)
importFrom(Biobase,annotation)
importFrom(Biobase,experimentData)
importFrom(Biobase,exprs)
importFrom(Biobase,notes)
importFrom(Biobase,pData)
importFrom(Biobase,phenoData)
importFrom(Biobase,sampleNames)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(GEOfastq,crawl_gsms)
importFrom(GEOquery,getGEO)
importFrom(GEOquery,getGEOSuppFiles)
importFrom(GEOquery,gunzip)
importFrom(LoomExperiment,SingleCellLoomExperiment)
importFrom(LoomExperiment,export)
importFrom(LoomExperiment,import)
importFrom(Matrix,colMeans)
importFrom(Matrix,readMM)
importFrom(Matrix,rowSums)
importFrom(Seurat,CreateSeuratObject)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,Read10X)
importFrom(Seurat,as.CellDataSet)
importFrom(Seurat,as.Seurat)
importFrom(Seurat,as.SingleCellExperiment)
importFrom(Seurat,as.sparse)
importFrom(SingleCellExperiment,"reducedDimNames<-")
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SummarizedExperiment,assayNames)
importFrom(curl,curl_fetch_memory)
importFrom(data.table,fread)
importFrom(data.table,rbindlist)
importFrom(dplyr,any_of)
importFrom(dplyr,arrange)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by_all)
importFrom(dplyr,if_all)
importFrom(dplyr,last_col)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,relocate)
importFrom(dplyr,select)
importFrom(dplyr,starts_with)
importFrom(dplyr,summarise)
importFrom(httr,POST)
importFrom(httr,content)
importFrom(httr,stop_for_status)
importFrom(jsonlite,flatten)
importFrom(jsonlite,fromJSON)
importFrom(magrittr,"%>%")
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(openxlsx,read.xlsx)
importFrom(parallel,detectCores)
importFrom(parallel,mclapply)
importFrom(pbapply,pbapply)
importFrom(purrr,reduce)
importFrom(rPanglaoDB,getSampleComposition)
importFrom(rPanglaoDB,getSampleList)
importFrom(rPanglaoDB,getSamples)
importFrom(reticulate,use_condaenv)
importFrom(rlang,.data)
importFrom(rlang,parse_expr)
importFrom(scater,logNormCounts)
importFrom(stats,formula)
importFrom(tibble,column_to_rownames)
importFrom(tidyr,all_of)
importFrom(tidyr,separate_rows)
importFrom(tidyr,spread)
importFrom(tools,file_ext)
importFrom(tools,md5sum)
importFrom(utils,download.file)
importFrom(utils,read.table)
importFrom(utils,untar)