diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..0f0b5d9 --- /dev/null +++ b/.gitignore @@ -0,0 +1,6 @@ +inst/doc +docs +.Rhistory +.Rbuildignore +.Rproj* +.Rproj.user diff --git a/CODE_OF_CONDUCT.md b/CODE_OF_CONDUCT.md new file mode 100644 index 0000000..b36903f --- /dev/null +++ b/CODE_OF_CONDUCT.md @@ -0,0 +1,128 @@ +# Contributor Covenant Code of Conduct + +## Our Pledge + +We as members, contributors, and leaders pledge to make participation in our +community a harassment-free experience for everyone, regardless of age, body +size, visible or invisible disability, ethnicity, sex characteristics, gender +identity and expression, level of experience, education, socio-economic status, +nationality, personal appearance, race, religion, or sexual identity and +orientation. + +We pledge to act and interact in ways that contribute to an open, welcoming, +diverse, inclusive, and healthy community. + +## Our Standards + +Examples of behavior that contributes to a positive environment for our +community include: + +* Demonstrating empathy and kindness toward other people +* Being respectful of differing opinions, viewpoints, and experiences +* Giving and gracefully accepting constructive feedback +* Accepting responsibility and apologizing to those affected by our mistakes, +and learning from the experience +* Focusing on what is best not just for us as individuals, but for the overall +community + +Examples of unacceptable behavior include: + +* The use of sexualized language or imagery, and sexual attention or +advances of any kind +* Trolling, insulting or derogatory comments, and personal or political attacks +* Public or private harassment +* Publishing others' private information, such as a physical or email +address, without their explicit permission +* Other conduct which could reasonably be considered inappropriate in a +professional setting + +## Enforcement Responsibilities + +Community leaders are responsible for clarifying and enforcing our standards +of acceptable behavior and will take appropriate and fair corrective action in +response to any behavior that they deem inappropriate, threatening, offensive, +or harmful. + +Community leaders have the right and responsibility to remove, edit, or reject +comments, commits, code, wiki edits, issues, and other contributions that are +not aligned to this Code of Conduct, and will communicate reasons for moderation +decisions when appropriate. + +## Scope + +This Code of Conduct applies within all community spaces, and also applies +when an individual is officially representing the community in public spaces. +Examples of representing our community include using an official e-mail +address, posting via an official social media account, or acting as an appointed +representative at an online or offline event. + +## Enforcement + +Instances of abusive, harassing, or otherwise unacceptable behavior may be +reported to the community leaders responsible for enforcement at [INSERT CONTACT +METHOD]. All complaints will be reviewed and investigated promptly and fairly. + +All community leaders are obligated to respect the privacy and security of the +reporter of any incident. + +## Enforcement Guidelines + +Community leaders will follow these Community Impact Guidelines in determining +the consequences for any action they deem in violation of this Code of Conduct: + +### 1. Correction + +**Community Impact**: Use of inappropriate language or other behavior deemed +unprofessional or unwelcome in the community. + +**Consequence**: A private, written warning from community leaders, providing +clarity around the nature of the violation and an explanation of why the +behavior was inappropriate. A public apology may be requested. + +### 2. Warning + +**Community Impact**: A violation through a single incident or series of +actions. + +**Consequence**: A warning with consequences for continued behavior. No +interaction with the people involved, including unsolicited interaction with +those enforcing the Code of Conduct, for a specified period of time. This +includes avoiding interactions in community spaces as well as external channels +like social media. Violating these terms may lead to a temporary or permanent +ban. + +### 3. Temporary Ban + +**Community Impact**: A serious violation of community standards, including +sustained inappropriate behavior. + +**Consequence**: A temporary ban from any sort of interaction or public +communication with the community for a specified period of time. No public or +private interaction with the people involved, including unsolicited interaction +with those enforcing the Code of Conduct, is allowed during this period. +Violating these terms may lead to a permanent ban. + +### 4. Permanent Ban + +**Community Impact**: Demonstrating a pattern of violation of community +standards, including sustained inappropriate behavior, harassment of an +individual, or aggression toward or disparagement of classes of individuals. + +**Consequence**: A permanent ban from any sort of public interaction within the +community. + +## Attribution + +This Code of Conduct is adapted from the [Contributor Covenant][homepage], +version 2.0, +available at https://www.contributor-covenant.org/version/2/0/ +code_of_conduct.html. + +Community Impact Guidelines were inspired by [Mozilla's code of conduct +enforcement ladder](https://github.com/mozilla/diversity). + +[homepage]: https://www.contributor-covenant.org + +For answers to common questions about this code of conduct, see the FAQ at +https://www.contributor-covenant.org/faq. Translations are available at https:// +www.contributor-covenant.org/translations. diff --git a/DESCRIPTION b/DESCRIPTION new file mode 100644 index 0000000..4639f0f --- /dev/null +++ b/DESCRIPTION @@ -0,0 +1,42 @@ +Package: ggcoverage +Type: Package +Title: ggcoverage - Visualize genomic coverage with various annotaion. +Version: 0.5.0 +Authors@R: + person(given = "Yabing", + family = "Song", + role = c("aut", "cre"), + email = "songyb0519@gmail.com") +Maintainer: Yabing Song +Description: The goal of ggcoverage is to simplify the process of visualizing genomic coverage. It contains functions to + load genomic data with bam/bigwig/bedgraph file format, create genomic coverage plot, add various annotation to + the coverage plot, including gene annotaion, transcription annotion, ideogram annotation and peak annotation. +License: MIT + file LICENSE +Encoding: UTF-8 +LazyData: true +RoxygenNote: 7.1.1 +Imports: + biovizBase, + dplyr, + GenomicRanges, + ggbio, + ggh4x, + ggplot2, + ggrepel, + grDevices, + IRanges, + magrittr, + patchwork, + RColorBrewer, + rlang, + Rsamtools, + rtracklayer, + scales, + stats, + utils +Suggests: + rmarkdown, + knitr, + BiocStyle, + htmltools +VignetteBuilder: knitr diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000..ea8d657 --- /dev/null +++ b/LICENSE @@ -0,0 +1,2 @@ +YEAR: 2022 +COPYRIGHT HOLDER: ggtrack authors diff --git a/LICENSE.md b/LICENSE.md new file mode 100644 index 0000000..71fd20e --- /dev/null +++ b/LICENSE.md @@ -0,0 +1,21 @@ +# MIT License + +Copyright (c) 2022 ggcoverage authors + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. diff --git a/NAMESPACE b/NAMESPACE new file mode 100644 index 0000000..5a79606 --- /dev/null +++ b/NAMESPACE @@ -0,0 +1,70 @@ +# Generated by roxygen2: do not edit by hand + +S3method(ggplot_add,gene) +S3method(ggplot_add,ideogram) +S3method(ggplot_add,peak) +S3method(ggplot_add,transcript) +export(FormatTrack) +export(LoadTrackFile) +export(geom_coverage) +export(geom_gene) +export(geom_ideogram) +export(geom_peak) +export(geom_transcript) +export(ggcoverage) +export(theme_coverage) +export(theme_coverage2) +importFrom(GenomicRanges,GRanges) +importFrom(GenomicRanges,makeGRangesFromDataFrame) +importFrom(GenomicRanges,setdiff) +importFrom(IRanges,IRanges) +importFrom(IRanges,findOverlaps) +importFrom(IRanges,subsetByOverlaps) +importFrom(RColorBrewer,brewer.pal) +importFrom(Rsamtools,indexBam) +importFrom(biovizBase,getIdeogram) +importFrom(dplyr,arrange) +importFrom(dplyr,filter) +importFrom(dplyr,group_by) +importFrom(dplyr,select) +importFrom(dplyr,summarise) +importFrom(ggbio,layout_karyogram) +importFrom(ggh4x,elem_list_rect) +importFrom(ggh4x,facet_wrap2) +importFrom(ggh4x,strip_themed) +importFrom(ggplot2,aes) +importFrom(ggplot2,aes_string) +importFrom(ggplot2,annotate) +importFrom(ggplot2,arrow) +importFrom(ggplot2,coord_cartesian) +importFrom(ggplot2,element_blank) +importFrom(ggplot2,element_rect) +importFrom(ggplot2,element_text) +importFrom(ggplot2,expansion) +importFrom(ggplot2,geom_polygon) +importFrom(ggplot2,geom_rect) +importFrom(ggplot2,geom_segment) +importFrom(ggplot2,geom_text) +importFrom(ggplot2,ggplot) +importFrom(ggplot2,ggplot_add) +importFrom(ggplot2,labs) +importFrom(ggplot2,margin) +importFrom(ggplot2,rel) +importFrom(ggplot2,scale_color_manual) +importFrom(ggplot2,scale_fill_manual) +importFrom(ggplot2,scale_x_continuous) +importFrom(ggplot2,scale_y_continuous) +importFrom(ggplot2,theme) +importFrom(ggplot2,theme_classic) +importFrom(ggplot2,unit) +importFrom(ggrepel,geom_text_repel) +importFrom(grDevices,colorRampPalette) +importFrom(magrittr,"%>%") +importFrom(patchwork,wrap_plots) +importFrom(rlang,.data) +importFrom(rlang,as_label) +importFrom(rtracklayer,import) +importFrom(scales,comma) +importFrom(stats,as.formula) +importFrom(utils,read.csv) +importFrom(utils,read.table) diff --git a/NEWS.md b/NEWS.md new file mode 100644 index 0000000..7b7de8e --- /dev/null +++ b/NEWS.md @@ -0,0 +1,32 @@ +# ggcoverage 0.5.0 +* First CRAN release. + +# ggcoverage 0.4.0 +## New features +* Added `geom_peak` to enhance its usage in ChIP-seq or ATAC-seq data. +* Change Y axis theme. + +------------- + +# ggcoverage 0.3.0 +## New features +* Added `geom_transcript`, `geom_ideogram`. + +## Minor changes +* Fix bug in `GetGeneGroup`. + +------------- + +# ggcoverage 0.2.0 +## New features +* Added `geom_gene`, `geom_ideogram`. + +------------- + +# ggcoverage 0.1.0 + +## New features +* Added a `NEWS.md` file to track changes to the package. +* Added `ggcoverage`, `geom_coverage`, `LoadTrack` and `FormatInput`. + +------------- diff --git a/R/FormatInput.R b/R/FormatInput.R new file mode 100644 index 0000000..99756dd --- /dev/null +++ b/R/FormatInput.R @@ -0,0 +1,103 @@ +# select df with specify start and end position +# non-overlap region and +GetRegion <- function(df, chr, start, end = NULL) { + # subset used chromosome + df <- df[df$seqnames == chr, ] %>% dplyr::arrange(start) + rownames(df) <- NULL + + # # get start loci + # strat.index <- max(which(df$start <= start)) + # if (is.null(end)) { + # end.index <- nrow(df) + # } else { + # end.index <- min(which(df$end >= end)) + # } + # # select possible region + # df.select <- df[strat.index:end.index, ] + # # filter + # df.select <- df.select[df.select$end >= start & df.select$start <= end, ] + df.select <- df[df$end >= start & df$start <= end, ] + init.start <- df.select[1, "start"] + if (init.start < start) { + df.select[1, "start"] <- start + } + if (!is.null(end)) { + final.end <- df.select[nrow(df.select), "end"] + if (final.end > end) { + df.select[nrow(df.select), "end"] <- end + } + } + return(df.select) +} + +#' Prepare Input for Creating Coverage Plot. +#' +#' @param data Track dataframe loaded by \code{\link{LoadTrackFile}}. +#' @param region Region used to create coverage plot, eg: chr14:21,677,306-21,737,601 or chr14:21,677,306. +#' Default: NULL. +#' @param gtf.gr Granges object of GTF, created with \code{\link{import.gff}}. Default: NULL. +#' @param gene.name The name of gene. Default: HNRNPC. +#' @param gene.name.type Gene name type (filed of \code{gtf.gr}), chosen from gene_name and gene_id. +#' Default: gene_name. +#' @param extend Extend length of \code{region}. Default: 2000. +#' +#' @return A dataframe. +#' @importFrom magrittr %>% +#' @importFrom dplyr filter arrange +#' +#' @export +#' +FormatTrack <- function(data, region = "chr14:21,677,306-21,737,601", + gtf.gr = NULL, gene.name = "HNRNPC", gene.name.type = c("gene_name", "gene_id"), + extend = 2000) { + # check parameters + gene.name.type <- match.arg(arg = gene.name.type) + + if (!is.null(region)) { + region.split <- unlist(strsplit(x = region, split = ":")) + region.chr <- region.split[1] + region.se <- unlist(strsplit(x = region.split[2], split = "-")) + if (length(region.se) == 1) { + region.start <- as.numeric(gsub(pattern = ",", replacement = "", x = region.se[1])) + region.end <- NULL + } else if (length(region.se) == 2) { + region.start <- as.numeric(gsub(pattern = ",", replacement = "", x = region.se[1])) + region.end <- as.numeric(gsub(pattern = ",", replacement = "", x = region.se[2])) + } + } else if (!is.null(gtf.gr)) { + # get gene related gtf + gene.gtf.info <- gtf.gr %>% + as.data.frame() %>% + dplyr::filter(type == "gene") + # get specific gene + gene.gtf.info.used <- gene.gtf.info[gene.gtf.info[, gene.name.type] == gene.name, ] + # get position + region.chr <- as.character(gene.gtf.info.used$seqnames) + region.start <- gene.gtf.info.used$start + region.end <- gene.gtf.info.used$end + } + + # extend region + if (!(is.null(extend))) { + # extend start + if (!is.null(region.start)) { + region.start <- region.start - extend + } + # extend end + if (!is.null(region.start)) { + region.end <- region.end + extend + } + } + # filter track dataframe + track.df.chr <- data %>% dplyr::filter(seqnames == region.chr) + track.chr.split <- split(x = track.df.chr, f = track.df.chr$Type) + track.used.list <- lapply(track.chr.split, function(x) { + single.used.track <- GetRegion(x, chr = region.chr, start = region.start, end = region.end) + }) + + # merge dataframe + track.used.df <- do.call(rbind, track.used.list) + rownames(track.used.df) <- NULL + + return(track.used.df) +} diff --git a/R/LoadTrack.R b/R/LoadTrack.R new file mode 100644 index 0000000..e57dd68 --- /dev/null +++ b/R/LoadTrack.R @@ -0,0 +1,115 @@ +#' Load Track File to Dataframe. +#' +#' @param track.file Track file, when \code{track.folder} is not NULL, determined by \code{track.folder}. +#' @param track.folder Track file folder. Default: NULL. +#' @param format Track file format, chosen from bam, wig, bw(bigwig), bedgraph(bedGraph). +#' @param meta.info Track file metadata. The columns should be: SampleName (\code{track.file} without suffix), +#' Type (sample with replicates information), Group (sample group). when \code{meta.file} is not NULL, +#' determined by \code{meta.file}.Default: NULL. +#' @param meta.file File contains track file metadata. Default: "". +#' @param bamcoverage.path The path to \code{bamCoverage}, used when \code{format} is bam. Default: NULL (auto-detect). +#' @param norm.method Methods to normalize the number of reads per bin, chosen from "RPKM", "CPM", "BPM", "RPGC", "None". +#' Default: RPKM. +#' @param bin.size Size of the bins, in bases. Default: 50. +#' @param bc.extra.para Extra parameters for \code{bamCoverage}, eg: "--effectiveGenomeSize 2700000000 --ignoreForNormalization chrX" +#' +#' @return A dataframe. +#' @importFrom rtracklayer import +#' @importFrom Rsamtools indexBam +#' @importFrom utils read.csv +#' @export +#' +LoadTrackFile <- function(track.file, track.folder = NULL, format = c("bam", "wig", "bw", "bedgraph"), meta.info = NULL, meta.file = "", + bamcoverage.path = NULL, norm.method = c("RPKM", "CPM", "BPM", "RPGC", "None"), + bin.size = 10, bc.extra.para = NULL) { + # check parameters + format <- match.arg(arg = format) + norm.method <- match.arg(arg = norm.method) + + # prepare track files + if (!is.null(track.folder)) { + track.file <- list.files(path = track.folder, full.names = TRUE, pattern = format) + } + + # get track dataframe + if (format %in% c("wig", "bw", "bedgraph")) { + # read track file + track.list <- lapply(track.file, function(x) { + # get basename + track.file.base <- basename(x) + # import wig, bigwig and bedgraph file + single.track.df <- as.data.frame(rtracklayer::import(x)) + single.track.df$TrackFile <- track.file.base + return(single.track.df) + }) + } else if (format == "bam") { + # require deeptools + if (is.null(bamcoverage.path)) { + bamcoverage.path <- Sys.which("bamCoverage") + if (bamcoverage.path == "") { + stop("Can not find bamCoverage automatically, please specify the path!") + } + } else { + bamcoverage.path <- bamcoverage.path + } + # create index + for (bam in track.file) { + bam.index.file <- paste(bam, "bai", sep = ".") + if (!file.exists(bam.index.file)) { + message("Create index file for: ", basename(bam)) + Rsamtools::indexBam(bam) + } + } + # read track file + track.list <- lapply(track.file, function(x) { + # get basename + track.file.base <- basename(x) + # bigwig file + out.bw.file <- tempfile(fileext = c(".bw")) + # prepare bamCoverage cmd + bamcoverage.cmd <- paste( + bamcoverage.path, "-b", x, "-o", out.bw.file, + "--binSize", bin.size, "--normalizeUsing", norm.method, bc.extra.para + ) + # run command + message(paste("Calling bamCoverage: ", bamcoverage.cmd)) + bamcoverage.status <- system(bamcoverage.cmd, intern = TRUE) + bamcoverage.status.code <- attr(bamcoverage.status, "status") + if (!is.null(bamcoverage.status.code)) { + stop("Run bamCoverage error!") + } + # import wig, bigwig and bedgraph file + single.track.df <- as.data.frame(rtracklayer::import(out.bw.file)) + single.track.df$TrackFile <- track.file.base + return(single.track.df) + }) + } + # get track dataframe + track.df <- do.call(rbind, track.list) + # remove width and strand + track.df <- track.df %>% dplyr::select(-c(width, strand)) + + # get metadata + if (file.exists(meta.file)) { + meta.info.used <- utils::read.csv(meta.file) + } else if (!is.null(meta.info)) { + meta.info.used <- meta.info + } else { + message("Sample without metadata!") + meta.info.used <- NULL + } + + # merge metadata + if (is.null(meta.info.used)) { + # create pseudo-group + track.df$Type <- track.df$TrackFile + track.df$Group <- track.df$TrackFile + track.df$TrackFile <- NULL + } else { + meta.info.used$SampleName <- paste(meta.info.used$SampleName, format, sep = ".") + track.df <- merge(track.df, meta.info.used, by.x = "TrackFile", by.y = "SampleName") + track.df$TrackFile <- NULL + } + + return(track.df) +} diff --git a/R/geom_coverage.R b/R/geom_coverage.R new file mode 100644 index 0000000..cd6a6f5 --- /dev/null +++ b/R/geom_coverage.R @@ -0,0 +1,177 @@ +#' Layer for Coverage Plot. +#' +#' @param data Track prepared by \code{\link{FormatTrack}}. +#' @param mapping Set of aesthetic mappings created by \code{aes} or \code{aes_}. Default: NULL. +#' @param color Track color. Default: NULL (select automatically). +#' @param facet.key Sample type key to create coverage plot. Default: Type. +#' @param facet.order The order of coverage plot. Default: NULL. +#' @param facet.color The color of sample text. Default: NULL (select automatically). +#' @param group.key Group of samples. Default: NULL. +#' @param range.size The label size of range text, used when \code{range.position} is in. Default: 3. +#' @param range.position The position of y axis range, chosen from in (move y axis in the plot) and +#' out (normal y axis). Default: in. +#' @param mark.region Mark region on the plot. Default: NULL. +#' @param mark.color The color of marked region. Default: "grey". +#' @param mark.alpha The alpha of marked region. Default: 0.5. +#' @param show.mark.label Logical value, whether to show mark label (use label column in \code{mark.region}). Default: TRUE. +#' @param mark.label.size The label size of mark label. Default: 4. +#' +#' @return Layers of ggplot2. +#' @importFrom ggplot2 aes_string scale_fill_manual geom_rect geom_text aes +#' @importFrom rlang .data +#' @importFrom grDevices colorRampPalette +#' @importFrom RColorBrewer brewer.pal +#' @importFrom rlang as_label +#' @importFrom stats as.formula +#' @importFrom ggh4x facet_wrap2 strip_themed elem_list_rect +#' @importFrom dplyr group_by summarise +#' @importFrom magrittr %>% +#' @importFrom ggrepel geom_text_repel +#' +#' @export +#' +geom_coverage <- function(data, mapping = NULL, + color = NULL, facet.key = "Type", facet.order = NULL, facet.color = NULL, + group.key = "Group", range.size = 3, range.position = c("in", "out"), + mark.region = NULL, mark.color = "grey", mark.alpha = 0.5, + show.mark.label = TRUE, mark.label.size = 4) { + # check parameters + range.position <- match.arg(arg = range.position) + + # get mapping and color + if (is.null(mapping)) { + if (!is.null(color)) { + mapping <- aes_string(xmin = "start", xmax = "end", ymin = "0", ymax = "score", fill = "Type") + if (length(color) != length(unique(data$Type))) { + warning("The color you provided is not as long as Type column in data, select automatically!") + # sample group with same color + tmp.color <- AutoColor(data = data, n = 9, name = "Set1", key = group.key) + # change Type color + fill.color.df <- merge(unique(data[c("Type", group.key)]), data.frame(color = tmp.color), by.x = group.key, by.y = 0) + fill.color <- fill.color.df$color + names(fill.color) <- fill.color.df$Type + } else { + fill.color <- color + if (is.null(names(fill.color))) { + names(fill.color) <- unique(data$Type) + } + } + sacle_fill_cols <- scale_fill_manual(values = fill.color) + } else { + mapping <- aes_string(xmin = "start", xmax = "end", ymin = "0", ymax = "score") + sacle_fill_cols <- NULL + } + } else { + if ("fill" %in% names(mapping)) { + fill.str <- rlang::as_label(mapping$fill) + fill.str.len <- length(unique(data[, fill.str])) + if (is.null(color) | length(color) != fill.str.len) { + # sample group with same color + tmp.color <- AutoColor(data = data, n = 9, name = "Set1", key = group.key) + # change Type color + fill.color.df <- merge(unique(data[c(fill.str, group.key)]), data.frame(color = tmp.color), by.x = group.key, by.y = 0) + fill.color <- fill.color.df$color + names(fill.color) <- fill.color.df[, fill.str] + } else { + fill.color <- color + if (is.null(names(fill.color))) { + names(fill.color) <- unique(data[, fill.str]) + } + } + sacle_fill_cols <- scale_fill_manual(values = fill.color) + } else { + sacle_fill_cols <- NULL + } + } + + # facet order + if (is.null(facet.order)) { + facet.order <- unique(data[, facet.key]) + } + data[, facet.key] <- factor(data[, facet.key], levels = facet.order) + + # facet color + if (is.null(facet.color)) { + facet.color <- AutoColor(data = data, n = 12, name = "Set3", key = facet.key) + } + + # facet formula + facet.formula <- as.formula(paste0("~ ", facet.key)) + region.rect <- geom_rect(data = data, mapping = mapping, show.legend = F) + region.facet <- facet_wrap2( + facets = facet.formula, ncol = 1, scales = "free_y", strip.position = "right", + strip = strip_themed(background_y = elem_list_rect( + fill = facet.color + )) + ) + plot.ele <- list(region.rect, region.facet) + + if (!is.null(sacle_fill_cols)) { + plot.ele <- append(plot.ele, sacle_fill_cols) + } + + # add range + ymax.str <- rlang::as_label(mapping$ymax) + if (range.position == "in") { + data.range <- data %>% + dplyr::group_by(.data[[facet.key]]) %>% + dplyr::summarise(max_score = max(.data[[ymax.str]])) + data.range$max_score <- sapply(data.range$max_score, CeilingNumber) + data.range$label <- paste0("[0, ", data.range$max_score, "]") + region.range <- geom_text( + data = data.range, + mapping = aes(x = -Inf, y = Inf, label = label), + hjust = 0, + vjust = 1.5, + size = range.size + ) + plot.ele <- append(plot.ele, region.range) + } + + # add rect + if (!is.null(mark.region)) { + # get valid mark region + region.start <- data[1, "start"] + region.end <- data[nrow(data), "end"] + valid.region.list <- list() + for (r in 1:nrow(mark.region)) { + if (mark.region[r, "start"] <= region.end & mark.region[r, "end"] >= region.start) { + if (mark.region[r, "end"] >= region.end) { + mark.region[r, "end"] <- region.end + } + if (mark.region[r, "start"] <= region.start) { + mark.region[r, "start"] <- region.start + } + valid.region.list[[r]] <- mark.region[r, ] + } + } + valid.region.df <- do.call(rbind, valid.region.list) %>% as.data.frame() + colnames(valid.region.df) <- colnames(mark.region) + + region.mark <- geom_rect( + data = valid.region.df, + aes_string(xmin = "start", xmax = "end", ymin = "0", ymax = "Inf"), + fill = mark.color, alpha = mark.alpha + ) + plot.ele <- append(plot.ele, region.mark) + # add rect label + if (show.mark.label) { + if ("label" %in% colnames(valid.region.df)) { + # create mark region label + region.label <- valid.region.df + region.label[, facet.key] <- facet.order[1] + region.mark.label <- geom_text_repel( + data = region.label, + mapping = aes(x = end, y = Inf, label = label), + hjust = -0.3, + vjust = 0.5, + size = mark.label.size + ) + plot.ele <- append(plot.ele, region.mark.label) + } else { + warning("label is not in provided mark.region!") + } + } + } + return(plot.ele) +} diff --git a/R/geom_gene.R b/R/geom_gene.R new file mode 100644 index 0000000..ec90874 --- /dev/null +++ b/R/geom_gene.R @@ -0,0 +1,274 @@ +#' Add Gene Annotation to Coverage Plot. +#' +#' @param gtf.gr Granges object of GTF, created with \code{\link{import.gff}}. Default: NULL. +#' @param overlap.gene.gap The gap between gene groups. Default: 0.1. +#' @param gene.size The line size of gene. Default: 1. +#' @param utr.size The line size of UTR. Default: 2. +#' @param exon.size The line size of exon. Default: 4. +#' @param arrow.size The line size of arrow. Default: 1. +#' @param color.by Color the line by. Default: strand. +#' @param fill.color Color used for \code{color.by}. +#' Default: darkblue for - (minus strand), darkgreen for + (plus strand). +#' @param show.utr Logical value, whether to show UTR. Default: TRUE. +#' @param arrow.gap The gap distance between arrow. Default: NULL. +#' @param arrow.num Total arrow num of whole region. Default: 50. +#' @param arrow.length The length of arrow. Default: 0.06. +#' @param label.size The size of gene label. Default: 3. +#' @param label.vjust The vjust of gene label. Default: 2. +#' @param plot.space Top and bottom margin. Default: 0.1. +#' @param plot.height The relative height of gene annotation to coverage plot. Default: 0.2. +#' +#' @return Plot. +#' @importFrom magrittr %>% +#' @importFrom rlang .data +#' @importFrom GenomicRanges GRanges makeGRangesFromDataFrame setdiff +#' @importFrom IRanges IRanges subsetByOverlaps findOverlaps +#' @importFrom dplyr filter select arrange +#' @importFrom ggplot2 ggplot_add ggplot geom_segment aes_string arrow unit geom_text labs theme_classic theme element_blank +#' element_text element_rect margin scale_y_continuous scale_color_manual scale_x_continuous coord_cartesian +#' @importFrom patchwork wrap_plots +#' @export +#' +geom_gene <- function(gtf.gr, overlap.gene.gap = 0.1, gene.size = 1, + utr.size = 2, exon.size = 4, arrow.size = 1, color.by = "strand", + fill.color = c("-" = "darkblue", "+" = "darkgreen"), show.utr = TRUE, + arrow.gap = NULL, arrow.num = 50, arrow.length = 0.06, + label.size = 3, label.vjust = 2, plot.space = 0.1, plot.height = 0.2) { + structure(list( + gtf.gr = gtf.gr, + overlap.gene.gap = overlap.gene.gap, gene.size = gene.size, + utr.size = utr.size, exon.size = exon.size, arrow.size = arrow.size, color.by = color.by, + fill.color = fill.color, show.utr = show.utr, arrow.gap = arrow.gap, arrow.num = arrow.num, + arrow.length = arrow.length, label.size = label.size, label.vjust = label.vjust, + plot.space = plot.space, plot.height = plot.height + ), + class = "gene" + ) +} + +#' @export +ggplot_add.gene <- function(object, plot, object_name) { + # get plot data + track.data <- plot$layers[[1]]$data + # prepare plot range + plot.range.chr <- track.data[1, "seqnames"] + plot.range.start <- track.data[1, "start"] + plot.range.end <- track.data[nrow(track.data), "end"] + plot.range.gr <- GenomicRanges::GRanges( + seqnames = plot.range.chr, + ranges = IRanges::IRanges(plot.range.start, plot.range.end) + ) + # get parameters + gtf.gr <- object$gtf.gr + overlap.gene.gap <- object$overlap.gene.gap + gene.size <- object$gene.size + utr.size <- object$utr.size + exon.size <- object$exon.size + arrow.size <- object$arrow.size + color.by <- object$color.by + fill.color <- object$fill.color + show.utr <- object$show.utr + arrow.gap <- object$arrow.gap + arrow.num <- object$arrow.num + arrow.length <- object$arrow.length + label.size <- object$label.size + label.vjust <- object$label.vjust + plot.space <- object$plot.space + plot.height <- object$plot.height + + # process + # get gene in region + # gtf.gr <- rtracklayer::import.gff(gtf.file,format = 'gtf') + gtf.df.used <- IRanges::subsetByOverlaps(x = gtf.gr, ranges = plot.range.gr) %>% as.data.frame() + # select used features + gene.info.used <- gtf.df.used %>% + dplyr::filter(type %in% c("gene", "exon", "UTR")) %>% + dplyr::select(c("seqnames", "start", "end", "strand", "type", "gene_type", "gene_name")) + # modify region + gene.info.used[gene.info.used$start <= plot.range.start, "start"] <- plot.range.start + gene.info.used[gene.info.used$end >= plot.range.end, "end"] <- plot.range.end + gene.info.used.gene <- gene.info.used %>% dplyr::filter(type == "gene") + # convert dataframe to GR + used.gene.gr <- GenomicRanges::makeGRangesFromDataFrame(gene.info.used.gene, + ignore.strand = TRUE, + seqnames.field = c("seqnames"), + start.field = "start", + end.field = "end", + strand.field = "strand" + ) + # divide genes to non-overlap groups + gene.group.idx <- GetGeneGroup(used.gene.gr, overlap.gene.gap = overlap.gene.gap) + group.num <- length(unique(gene.group.idx)) + gene.info.used.gene$group <- gene.group.idx + gene.info.used.gene$start <- as.numeric(gene.info.used.gene$start) + gene.info.used.gene$end <- as.numeric(gene.info.used.gene$end) + + # get exon region + gene.info.used <- merge(gene.info.used, gene.info.used.gene[c("gene_name", "group")], by = "gene_name") + gene.info.used.exon <- gene.info.used %>% dplyr::filter(type == "exon") + gene.info.used.exon$start <- as.numeric(gene.info.used.exon$start) + gene.info.used.exon$end <- as.numeric(gene.info.used.exon$end) + + # create plot without arrow + if (show.utr) { + # get utr region + gene.info.used.utr <- gene.info.used %>% dplyr::filter(type == "UTR") + gene.info.used.utr$start <- as.numeric(gene.info.used.utr$start) + gene.info.used.utr$end <- as.numeric(gene.info.used.utr$end) + # substract UTR from exon + gene.exon.utr <- SplitExonUTR(exon.df = gene.info.used.exon, utr.df = gene.info.used.utr) + gene.info.used.exon <- gene.exon.utr$exon + gene.info.used.utr <- gene.exon.utr$utr + gene.plot <- ggplot() + + geom_segment( + data = gene.info.used.gene, + mapping = aes_string( + x = "start", + y = "group", + xend = "end", + yend = "group", + color = color.by + ), + show.legend = FALSE, + size = gene.size + ) + + geom_segment( + data = gene.info.used.utr, + mapping = aes_string( + x = "start", + y = "group", + xend = "end", + yend = "group", + color = color.by + ), + show.legend = FALSE, + size = utr.size + ) + + geom_segment( + data = gene.info.used.exon, + mapping = aes_string( + x = "start", + y = "group", + xend = "end", + yend = "group", + color = color.by + ), + show.legend = FALSE, + size = exon.size + ) + } else { + gene.plot <- ggplot() + + geom_segment( + data = gene.info.used.gene, + mapping = aes_string( + x = "start", + y = "group", + xend = "end", + yend = "group", + color = color.by + ), + show.legend = FALSE, + size = gene.size + ) + + geom_segment( + data = gene.info.used.exon, + mapping = aes_string( + x = "start", + y = "group", + xend = "end", + yend = "group", + color = color.by + ), + show.legend = FALSE, + size = exon.size + ) + } + + if (is.null(arrow.gap)) { + if (is.null(arrow.num)) { + stop("Please provide either arrow.num or arrow.gap!") + } else { + arrow.gap <- (plot.range.end - plot.range.start) / arrow.num + } + } + arrow.list <- list() + # create arrow based on gene + for (i in 1:nrow(gene.info.used.gene)) { + gene.seq <- as.character(gene.info.used.gene[i, "seqnames"]) + gene.start <- as.numeric(gene.info.used.gene[i, "start"]) + gene.end <- as.numeric(gene.info.used.gene[i, "end"]) + gene.strand <- as.character(gene.info.used.gene[i, "strand"]) + gene.type <- as.character(gene.info.used.gene[i, "type"]) + gene.gene_type <- as.character(gene.info.used.gene[i, "gene_type"]) + gene.name <- as.character(gene.info.used.gene[i, "gene_name"]) + gene.group <- as.numeric(gene.info.used.gene[i, "group"]) + gene.gap <- gene.end - gene.start + if (gene.gap <= arrow.gap) { + # create only one arrow + arrow.pos <- floor((gene.end + gene.start) / 2) + arrow.list[[gene.name]] <- c( + gene.seq, arrow.pos, arrow.pos + 1, gene.strand, + gene.type, gene.gene_type, gene.name, gene.group + ) + } else { + gene.arrow.num <- floor(gene.gap / arrow.gap) + gene.arrow.start <- (arrow.gap * 0:gene.arrow.num) + gene.start + gene.arrow.end <- gene.arrow.start + 1 + for (grn in 1:length(gene.arrow.start)) { + arrow.list[[paste(gene.name, grn, sep = "_")]] <- + c( + gene.seq, gene.arrow.start[grn], gene.arrow.end[grn], gene.strand, + gene.type, gene.gene_type, gene.name, gene.group + ) + } + } + } + arrow.df <- do.call(rbind, arrow.list) %>% as.data.frame() + colnames(arrow.df) <- c("seqnames", "start", "end", "strand", "type", "gene_type", "gene_name", "group") + arrow.df$start <- as.numeric(arrow.df$start) + arrow.df$end <- as.numeric(arrow.df$end) + arrow.df$group <- as.numeric(arrow.df$group) + + gene.arrow.plot <- gene.plot + geom_segment( + data = arrow.df, + mapping = aes_string( + x = "start", + y = "group", + xend = "end", + yend = "group", + color = color.by + ), + arrow = arrow( + ends = ifelse(arrow.df$strand == "-", "first", "last"), + type = "open", + angle = 45, + length = unit(x = arrow.length, units = "inches") + ), + show.legend = FALSE, + size = arrow.size + ) + + label.df <- data.frame( + pos = (gene.info.used.gene$start + gene.info.used.gene$end) / 2, + group = gene.info.used.gene$group, + gene = gene.info.used.gene$gene_name + ) + + gene.final.plot <- gene.arrow.plot + + geom_text( + data = label.df, + mapping = aes_string(x = "pos", y = "group", label = "gene"), + vjust = label.vjust, size = label.size + ) + + labs(y = "Gene") + + theme_gene( + overlap.gene.gap = overlap.gene.gap, group.num = group.num, + fill.color = fill.color, x.range = c(plot.range.start, plot.range.end), + margin.len = plot.space + ) + # assemble plot + patchwork::wrap_plots(plot + theme(plot.margin = margin(t = plot.space, b = plot.space)), + gene.final.plot, + ncol = 1, heights = c(1, plot.height) + ) +} diff --git a/R/geom_ideogram.R b/R/geom_ideogram.R new file mode 100644 index 0000000..26e53e3 --- /dev/null +++ b/R/geom_ideogram.R @@ -0,0 +1,103 @@ +#' Add Ideogram Annotation to Coverage Plot. +#' +#' @param genome Single specie names, which must be one of the result from \code{ucscGenomes()$db}. +#' If missing, will invoke a menu for users to choose from. Default: hg19. +#' @param mark.color The color to mark plot region on ideogram. Default: "red". +#' @param mark.alpha The alpha to mark plot region on ideogram. Default: 0.7. +#' @param mark.line.size The line size to mark plot region on ideogram. Default: 1. +#' @param add.shadow Logical value, whether to add shadow polygon. Default: TRUE. +#' @param shadow.color The color to fill shadow polygon. Default: grey. +#' @param shadow.alpha The alpha of shadow polygon. Default: 0.7. +#' @param shadow.line.size The line size of shadow polygon. Default: 1. +#' @param plot.space Top and bottom margin. Default: 0.1. +#' @param plot.height The relative height of gene annotation to coverage plot. Default: 0.2. +#' +#' @return Plot. +#' @importFrom biovizBase getIdeogram +#' @importFrom magrittr %>% +#' @importFrom ggbio layout_karyogram +#' @importFrom ggplot2 ggplot_add ggplot geom_rect aes_string geom_polygon theme_classic theme element_blank +#' scale_x_continuous scale_y_continuous margin +#' @importFrom patchwork wrap_plots +#' @export +#' +geom_ideogram <- function(genome = "hg19", mark.color = "red", mark.alpha = 0.7, mark.line.size = 1, + add.shadow = TRUE, shadow.color = "grey", shadow.alpha = 0.7, shadow.line.size = 1, + plot.space = 0.1, plot.height = 0.1) { + structure(list( + genome = genome, mark.color = mark.color, mark.alpha = mark.alpha, mark.line.size = mark.line.size, + add.shadow = add.shadow, shadow.color = shadow.color, shadow.alpha = shadow.alpha, + shadow.line.size = shadow.line.size, plot.space = plot.space, plot.height = plot.height + ), + class = "ideogram" + ) +} + +#' @export +ggplot_add.ideogram <- function(object, plot, object_name) { + # get plot data + plot.data <- plot$layers[[1]]$data + # prepare plot range + plot.chr <- as.character(plot.data[1, "seqnames"]) + plot.region.start <- plot$coordinates$limits$x[1] + plot.region.end <- plot$coordinates$limits$x[2] + + # get parameters + genome <- object$genome + mark.color <- object$mark.color + mark.alpha <- object$mark.alpha + mark.line.size <- object$mark.line.size + add.shadow <- object$add.shadow + shadow.color <- object$shadow.color + shadow.alpha <- object$shadow.alpha + shadow.line.size <- object$shadow.line.size + plot.space <- object$plot.space + plot.height <- object$plot.height + + # get genome and chr ideogram + genome.info <- biovizBase::getIdeogram(genome = genome, subchr = plot.chr, cytobands = TRUE) + genome.info.df <- genome.info %>% as.data.frame() + # get genome length + genome.length <- genome.info.df[nrow(genome.info.df), "end"] + + # create basci plot + ideogram.plot <- ggplot() + + ggbio::layout_karyogram(genome.info, cytobands = TRUE, geom = NULL, rect.height = 10) + + # mark plot region + zoom.df <- data.frame( + xmin = plot.region.start, + xmax = plot.region.end, + ymin = 0 - 0.2, + ymax = 10 + 0.2, + seqnames = plot.chr + ) + ideogram.plot <- ideogram.plot + + geom_rect( + data = zoom.df, + aes_string(xmin = "xmin", xmax = "xmax", ymin = "ymin", ymax = "ymax"), + color = mark.color, fill = mark.color, size = mark.line.size, + alpha = mark.alpha + ) + if (add.shadow) { + shadow.df <- data.frame( + x = c(plot.region.start, 0, genome.length, plot.region.end), + y = c(10.2, 16, 16, 10.2) + ) + ideogram.plot <- ideogram.plot + + geom_polygon( + data = shadow.df, + aes_string(x = "x", y = "y"), + color = shadow.color, fill = shadow.color, size = shadow.line.size, + alpha = shadow.alpha + ) + } + + # add theme + ideogram.plot <- ideogram.plot + theme_ideogram() + # assemble plot + patchwork::wrap_plots(plot + theme(plot.margin = margin(t = plot.space, b = plot.space)), + ideogram.plot, + ncol = 1, heights = c(1, plot.height) + ) +} diff --git a/R/geom_peak.R b/R/geom_peak.R new file mode 100644 index 0000000..53496bf --- /dev/null +++ b/R/geom_peak.R @@ -0,0 +1,74 @@ +#' Add Peak Annotation to Coverage Plot. +#' +#' @param bed.file The path to bed file. +#' @param peak.color Peak color. Default: black. +#' @param peak.size The line size of peak. Default: 5. +#' @param plot.space Top and bottom margin. Default: 0.1. +#' @param plot.height The relative height of gene annotation to coverage plot. Default: 0.2. +#' +#' @return Plot. +#' @importFrom utils read.table +#' @importFrom dplyr arrange +#' @importFrom magrittr %>% +#' @importFrom ggplot2 ggplot_add ggplot geom_segment aes_string theme_classic theme element_blank element_text +#' element_rect margin scale_x_continuous scale_y_continuous coord_cartesian +#' @export +#' +geom_peak <- function(bed.file, peak.color = "black", peak.size = 5, + plot.space = 0.1, plot.height = 0.1) { + structure(list( + bed.file = bed.file, peak.color = peak.color, peak.size = peak.size, + plot.space = plot.space, plot.height = plot.height + ), + class = "peak" + ) +} + +#' @export +ggplot_add.peak <- function(object, plot, object_name) { + # get plot data + plot.data <- plot$layers[[1]]$data + # prepare plot range + plot.chr <- as.character(plot.data[1, "seqnames"]) + plot.region.start <- plot$coordinates$limits$x[1] + plot.region.end <- plot$coordinates$limits$x[2] + + # get parameters + bed.file <- object$bed.file + peak.color <- object$peak.color + peak.size <- object$peak.size + plot.space <- object$plot.space + plot.height <- object$plot.height + + # prepare bed file + bed.info <- utils::read.table(file = bed.file, header = FALSE, sep = "\t", stringsAsFactors = FALSE) + bed.info <- bed.info[c(1, 2, 3)] + colnames(bed.info) <- c("seqnames", "start", "end") + # convert to 1-based + bed.info$start <- as.numeric(bed.info$start) + 1 + + # get valid bed + valid.bed <- GetRegion(chr = plot.chr, df = bed.info, start = plot.region.start, end = plot.region.end) + + peak.plot <- ggplot() + + geom_segment( + data = valid.bed, + mapping = aes_string( + x = "start", + y = "1", + xend = "end", + yend = "1" + ), + size = peak.size, + color = peak.color + ) + + labs(y = "Peak") + + # add theme + peak.plot <- peak.plot + theme_peak(margin.len = plot.space, x.range = c(plot.region.start, plot.region.end)) + # assemble plot + patchwork::wrap_plots(plot + theme(plot.margin = margin(t = plot.space, b = plot.space)), + peak.plot, + ncol = 1, heights = c(1, plot.height) + ) +} diff --git a/R/geom_transcript.R b/R/geom_transcript.R new file mode 100644 index 0000000..71b48c6 --- /dev/null +++ b/R/geom_transcript.R @@ -0,0 +1,251 @@ +#' Add Transcript Annotation to Coverage Plot. +#' +#' @param gtf.gr Granges object of GTF, created with \code{\link{import.gff}}. Default: NULL. +#' @param gene.name Gene name of all transcripts. Default: HNRNPC. +#' @param overlap.tx.gap The gap between transcript groups. Default: 0.1. +#' @param tx.size The line size of transcript. Default: 1. +#' @param utr.size The line size of UTR. Default: 2. +#' @param exon.size The line size of exon. Default: 4. +#' @param arrow.size The line size of arrow. Default: 1. +#' @param color.by Color the line by. Default: strand. +#' @param fill.color Color used for \code{color.by}. +#' Default: darkblue for - (minus strand), darkgreen for + (plus strand). +#' @param arrow.gap The gap distance between arrow. Default: NULL. +#' @param arrow.num Total arrow num of whole region. Default: 50. +#' @param arrow.length The length of arrow. Default: 0.06. +#' @param label.size The size of gene label. Default: 3. +#' @param label.vjust The vjust of gene label. Default: 2. +#' @param plot.space Top and bottom margin. Default: 0.1. +#' @param plot.height The relative height of gene annotation to coverage plot. Default: 0.2. +#' +#' @return Plot. +#' @importFrom magrittr %>% +#' @importFrom rlang .data +#' @importFrom GenomicRanges GRanges makeGRangesFromDataFrame setdiff +#' @importFrom IRanges IRanges subsetByOverlaps findOverlaps +#' @importFrom dplyr filter select arrange +#' @importFrom ggplot2 ggplot_add ggplot geom_segment aes_string arrow unit geom_text labs theme_classic theme element_blank +#' element_text element_rect margin scale_y_continuous scale_color_manual scale_x_continuous coord_cartesian +#' @importFrom patchwork wrap_plots +#' @export +#' +geom_transcript <- function(gtf.gr, gene.name = "HNRNPC", overlap.tx.gap = 0.1, tx.size = 1, + utr.size = 2, exon.size = 4, arrow.size = 1, color.by = "strand", + fill.color = c("-" = "darkblue", "+" = "darkgreen"), + arrow.gap = NULL, arrow.num = 50, arrow.length = 0.06, + label.size = 3, label.vjust = 2, plot.space = 0.1, plot.height = 1) { + structure(list( + gtf.gr = gtf.gr, gene.name = gene.name, overlap.tx.gap = overlap.tx.gap, tx.size = tx.size, + utr.size = utr.size, exon.size = exon.size, arrow.size = arrow.size, color.by = color.by, + fill.color = fill.color, arrow.gap = arrow.gap, arrow.num = arrow.num, + arrow.length = arrow.length, label.size = label.size, label.vjust = label.vjust, + plot.space = plot.space, plot.height = plot.height + ), + class = "transcript" + ) +} + +#' @export +ggplot_add.transcript <- function(object, plot, object_name) { + # get plot data + track.data <- plot$layers[[1]]$data + # prepare plot range + plot.range.chr <- track.data[1, "seqnames"] + plot.range.start <- track.data[1, "start"] + plot.range.end <- track.data[nrow(track.data), "end"] + plot.range.gr <- GenomicRanges::GRanges( + seqnames = plot.range.chr, + ranges = IRanges::IRanges(plot.range.start, plot.range.end) + ) + + # get parameters + gtf.gr <- object$gtf.gr + gene.name <- object$gene.name + overlap.tx.gap <- object$overlap.tx.gap + tx.size <- object$tx.size + utr.size <- object$utr.size + exon.size <- object$exon.size + arrow.size <- object$arrow.size + color.by <- object$color.by + fill.color <- object$fill.color + arrow.gap <- object$arrow.gap + arrow.num <- object$arrow.num + arrow.length <- object$arrow.length + label.size <- object$label.size + label.vjust <- object$label.vjust + plot.space <- object$plot.space + plot.height <- object$plot.height + + # filter gene in region + gtf.df.used <- IRanges::subsetByOverlaps(x = gtf.gr, ranges = plot.range.gr) %>% as.data.frame() + # select used features + gene.tx.df <- gtf.df.used %>% + dplyr::filter(gene_name == gene.name) %>% + dplyr::filter(type %in% c("transcript", "exon", "UTR")) %>% + dplyr::select(c("seqnames", "start", "end", "strand", "type", "transcript_name")) + # modify region + gene.tx.df[gene.tx.df$start <= plot.range.start, "start"] <- plot.range.start + gene.tx.df[gene.tx.df$end >= plot.range.end, "end"] <- plot.range.end + + # prepare plot dataframe + # seperate: transcript, UTR, exon + gene.tx.df.tx <- gene.tx.df %>% dplyr::filter(type == "transcript") + # convert dataframe to GR + tx.gr <- GenomicRanges::makeGRangesFromDataFrame(gene.tx.df.tx, + ignore.strand = TRUE, + seqnames.field = c("seqnames"), + start.field = "start", + end.field = "end", + strand.field = "strand" + ) + # divide genes to non-overlap groups + tx.group.idx <- GetGeneGroup(tx.gr, overlap.gene.gap = overlap.tx.gap) + group.num <- length(unique(tx.group.idx)) + gene.tx.df.tx$group <- tx.group.idx + gene.tx.df.tx$start <- as.numeric(gene.tx.df.tx$start) + gene.tx.df.tx$end <- as.numeric(gene.tx.df.tx$end) + + # get exon region + gene.tx.df <- merge(gene.tx.df, gene.tx.df.tx[c("transcript_name", "group")], by = "transcript_name") + gene.tx.df.exon <- gene.tx.df %>% dplyr::filter(type == "exon") + gene.tx.df.exon$start <- as.numeric(gene.tx.df.exon$start) + gene.tx.df.exon$end <- as.numeric(gene.tx.df.exon$end) + + # get utr region + gene.tx.df.utr <- gene.tx.df %>% dplyr::filter(type == "UTR") + gene.tx.df.utr$start <- as.numeric(gene.tx.df.utr$start) + gene.tx.df.utr$end <- as.numeric(gene.tx.df.utr$end) + + # substract UTR from exon + tx.exon.utr <- SplitTxExonUTR(exon.df = gene.tx.df.exon, utr.df = gene.tx.df.utr) + gene.tx.df.exon <- tx.exon.utr$exon + gene.tx.df.utr <- tx.exon.utr$utr + + # create basic plot + tx.plot <- ggplot() + + geom_segment( + data = gene.tx.df.tx, + mapping = aes_string( + x = "start", + y = "group", + xend = "end", + yend = "group", + color = "strand" + ), + show.legend = FALSE, + size = tx.size + ) + + geom_segment( + data = gene.tx.df.utr, + mapping = aes_string( + x = "start", + y = "group", + xend = "end", + yend = "group", + color = "strand" + ), + show.legend = FALSE, + size = utr.size + ) + + geom_segment( + data = gene.tx.df.exon, + mapping = aes_string( + x = "start", + y = "group", + xend = "end", + yend = "group", + color = "strand" + ), + show.legend = FALSE, + size = exon.size + ) + + theme_classic() + + if (is.null(arrow.gap)) { + if (is.null(arrow.num)) { + stop("Please provide either arrow.num or arrow.gap!") + } else { + arrow.gap <- (plot.range.end - plot.range.start) / arrow.num + } + } + arrow.list <- list() + # create arrow based on gene + for (i in 1:nrow(gene.tx.df.tx)) { + tx.seq <- as.character(gene.tx.df.tx[i, "seqnames"]) + tx.start <- as.numeric(gene.tx.df.tx[i, "start"]) + tx.end <- as.numeric(gene.tx.df.tx[i, "end"]) + tx.strand <- as.character(gene.tx.df.tx[i, "strand"]) + tx.type <- as.character(gene.tx.df.tx[i, "type"]) + tx.name <- as.character(gene.tx.df.tx[i, "transcript_name"]) + tx.group <- as.numeric(gene.tx.df.tx[i, "group"]) + tx.gap <- tx.end - tx.start + if (tx.gap <= arrow.gap) { + # create only one arrow + arrow.pos <- floor((tx.end + tx.start) / 2) + arrow.list[[tx.name]] <- c( + tx.seq, arrow.pos, arrow.pos + 1, tx.strand, + tx.type, tx.name, tx.group + ) + } else { + tx.arrow.num <- floor(tx.gap / arrow.gap) + tx.arrow.start <- (arrow.gap * 0:tx.arrow.num) + tx.start + tx.arrow.end <- tx.arrow.start + 1 + for (trn in 1:length(tx.arrow.start)) { + arrow.list[[paste(tx.name, trn, sep = "_")]] <- + c( + tx.seq, tx.arrow.start[trn], tx.arrow.end[trn], tx.strand, + tx.type, tx.name, tx.group + ) + } + } + } + arrow.df <- do.call(rbind, arrow.list) %>% as.data.frame() + colnames(arrow.df) <- c("seqnames", "start", "end", "strand", "type", "transcript_name", "group") + arrow.df$start <- as.numeric(arrow.df$start) + arrow.df$end <- as.numeric(arrow.df$end) + arrow.df$group <- as.numeric(arrow.df$group) + # add arrow + tx.arrow.plot <- tx.plot + geom_segment( + data = arrow.df, + mapping = aes_string( + x = "start", + y = "group", + xend = "end", + yend = "group", + color = color.by + ), + arrow = arrow( + ends = ifelse(arrow.df$strand == "-", "first", "last"), + type = "open", + angle = 45, + length = unit(x = arrow.length, units = "inches") + ), + show.legend = FALSE, + size = arrow.size + ) + + # prepare label dataframe + label.df <- data.frame( + pos = (gene.tx.df.tx$start + gene.tx.df.tx$end) / 2, + group = gene.tx.df.tx$group, + gene = gene.tx.df.tx$transcript_name + ) + # add label to plot + tx.final.plot <- tx.arrow.plot + + geom_text( + data = label.df, + mapping = aes_string(x = "pos", y = "group", label = "gene"), + vjust = label.vjust, hjust = 0.5, size = label.size + ) + + labs(y = "Transcript") + + theme_transcript( + overlap.tx.gap = overlap.tx.gap, group.num = group.num, + fill.color = fill.color, x.range = c(plot.range.start, plot.range.end), + margin.len = plot.space + ) + # assemble plot + patchwork::wrap_plots(plot + theme(plot.margin = margin(t = plot.space, b = plot.space)), + tx.final.plot, + ncol = 1, heights = c(1, plot.height) + ) +} diff --git a/R/ggcoverage.R b/R/ggcoverage.R new file mode 100644 index 0000000..a250e1b --- /dev/null +++ b/R/ggcoverage.R @@ -0,0 +1,77 @@ +#' Create Coverage Plot. +#' +#' @param data Coverage dataframe loaded by \code{\link{LoadTrackFile}}. +#' @param region Region used to create coverage plot, eg: chr14:21,677,306-21,737,601 or chr14:21,677,306. +#' Default: NULL. +#' @param gtf.gr Granges object of GTF, created with \code{\link{import.gff}}. Default: NULL. +#' @param extend Extend length of \code{region}. Default: 2000. +#' @param gene.name The name of gene. Default: HNRNPC. +#' @param gene.name.type Gene name type (filed of \code{gtf.gr}), chosen from gene_name and gene_id. +#' Default: gene_name. +#' @param mapping Set of aesthetic mappings created by \code{aes} or \code{aes_}. Default: NULL. +#' @param color Track color. Default: NULL (select automatically). +#' @param facet.key Sample type key to create Coverage plot. Default: Type. +#' @param facet.order The order of Coverage plot. Default: NULL. +#' @param facet.color The color of sample text. Default: NULL (select automatically). +#' @param group.key Group of samples. Default: NULL. +#' @param range.size The label size of range text, used when \code{range.position} is in. Default: 3. +#' @param range.position The position of y axis range, chosen from in (move y axis in the plot) and +#' out (normal y axis). Default: in. +#' @param plot.space The space between every facet. Default: 0.2. +#' @param mark.region Mark region on the plot. Default: NULL. +#' @param mark.color The color of marked region. Default: "grey". +#' @param mark.alpha The alpha of marked region. Default: 0.5. +#' @param show.mark.label Logical value, whether to show mark label (use label column in \code{mark.region}). Default: TRUE. +#' @param mark.label.size The label size of mark label. Default: 4. +#' +#' @return A ggplot2 object. +#' @importFrom magrittr %>% +#' @importFrom dplyr filter arrange +#' @importFrom ggplot2 ggplot aes_string scale_fill_manual geom_rect geom_text aes theme_classic theme unit +#' element_blank annotate rel scale_y_continuous expansion scale_x_continuous coord_cartesian +#' @importFrom scales comma +#' @importFrom grDevices colorRampPalette +#' @importFrom RColorBrewer brewer.pal +#' @importFrom rlang as_label +#' @importFrom stats as.formula +#' @importFrom ggh4x facet_wrap2 strip_themed +#' @importFrom dplyr group_by summarise +#' @importFrom magrittr %>% +#' @importFrom ggrepel geom_text_repel +#' @export +#' +ggcoverage <- function(data, region = "chr14:21,677,306-21,737,601", gtf.gr = NULL, extend = 2000, + gene.name = "HNRNPC", gene.name.type = c("gene_name", "gene_id"), + mapping = NULL, color = NULL, facet.key = "Type", facet.order = NULL, facet.color = NULL, + group.key = "Group", range.size = 3, range.position = c("in", "out"), plot.space = 0.2, + mark.region = NULL, mark.color = "grey", mark.alpha = 0.5, show.mark.label = TRUE, mark.label.size = 4) { + # check parameters + gene.name.type <- match.arg(arg = gene.name.type) + range.position <- match.arg(arg = range.position) + + # formating data + data <- FormatTrack( + data = data, region = region, gtf.gr = gtf.gr, extend = extend, + gene.name = gene.name, gene.name.type = gene.name.type + ) + plot.range.start <- data[1, "start"] + plot.range.end <- data[nrow(data), "end"] + + # create plot + coverage.plot <- ggplot() + + geom_coverage( + data = data, mapping = mapping, + color = color, facet.key = facet.key, facet.order = facet.color, facet.color = facet.color, + group.key = group.key, range.size = range.size, range.position = range.position, + mark.region = mark.region, mark.color = mark.color, mark.alpha = mark.alpha, show.mark.label = show.mark.label, + mark.label.size = mark.label.size + ) + # add theme + if (range.position == "in") { + coverage.plot + + theme_coverage(space = plot.space, x.range = c(plot.range.start, plot.range.end)) + } else if (range.position == "out") { + coverage.plot + + theme_coverage2(space = plot.space, x.range = c(plot.range.start, plot.range.end)) + } +} diff --git a/R/global.R b/R/global.R new file mode 100644 index 0000000..67524c8 --- /dev/null +++ b/R/global.R @@ -0,0 +1,14 @@ +.onLoad <- function(libname, pkgname) { + # set global variables in order to avoid CHECK notes + utils::globalVariables("type") + utils::globalVariables("seqnames") + utils::globalVariables("queryHits") + utils::globalVariables("width") + utils::globalVariables("strand") + utils::globalVariables("label") + utils::globalVariables("end") + utils::globalVariables("gene_name") + utils::globalVariables("type") + + invisible() +} diff --git a/R/theme_ggcoverage.R b/R/theme_ggcoverage.R new file mode 100644 index 0000000..b21945f --- /dev/null +++ b/R/theme_ggcoverage.R @@ -0,0 +1,190 @@ +# theme for ggcoverage: suitable for range position is in +#' Theme for geom_coverage. +#' +#' @param space The space between facets. Default: 0.2. +#' @param x.range X axis ranges. +#' +#' @return List of layers. +#' @importFrom ggplot2 theme_classic theme unit element_blank annotate rel scale_y_continuous expansion +#' scale_x_continuous coord_cartesian +#' @importFrom scales comma +#' @export +#' +theme_coverage <- function(space = 0.2, x.range) { + list( + theme_classic(), + theme( + panel.spacing.y = unit(x = space, units = "line"), + axis.line.y = element_blank(), + axis.ticks.y = element_blank(), + axis.text.y = element_blank(), + axis.title = element_blank() + ), + annotate("segment", x = -Inf, xend = Inf, y = -Inf, yend = -Inf, size = rel(1)), + scale_y_continuous(expand = expansion(mult = c(0))), + scale_x_continuous(labels = scales::comma, expand = c(0, 0)), + coord_cartesian(xlim = x.range) + ) +} + +# theme for ggcoverage: suitable for range position is out +#' Theme for geom_coverage. +#' +#' @param space The space between facets. Default: 0.2. +#' @param x.range X axis ranges. +#' +#' @return List of layers. +#' @importFrom ggplot2 scale_y_continuous expansion theme_classic theme unit element_blank annotate rel +#' scale_x_continuous coord_cartesian +#' @importFrom scales comma +#' @export +#' +theme_coverage2 <- function(space = 0.2, x.range) { + list( + scale_y_continuous( + limits = ~ c(0, CeilingNumber(max(.x))), + breaks = ~ .x[2], + expand = expansion(mult = c(0)) + ), + theme_classic(), + theme( + panel.spacing.y = unit(x = space, units = "line"), + axis.title = element_blank() + ), + annotate("segment", x = -Inf, xend = Inf, y = -Inf, yend = -Inf, size = rel(1)), + scale_x_continuous(labels = scales::comma, expand = c(0, 0)), + coord_cartesian(xlim = x.range) + ) +} + + +# theme for geom_gene +#' Theme for geom_gene. +#' +#' @param overlap.gene.gap The gap between gene groups. +#' @param group.num The number of groups. +#' @param fill.color Fill color. +#' @param x.range X axis ranges. +#' @param margin.len Top and bottom margin. +#' +#' @return List of layers. +#' @importFrom ggplot2 theme_classic theme element_blank element_text element_rect margin +#' scale_y_continuous scale_color_manual scale_x_continuous coord_cartesian +#' +theme_gene <- function(overlap.gene.gap, group.num, fill.color, x.range, margin.len) { + list( + theme_classic(), + theme( + axis.line.y = element_blank(), + axis.text.y = element_blank(), + axis.title.y.right = element_text(color = "black", angle = 90, vjust = 0.5), + axis.ticks.y = element_blank(), + axis.text.x = element_blank(), + axis.title.x = element_blank(), + axis.ticks.x = element_blank(), + panel.border = element_rect(colour = "black", fill = NA, size = 1), + plot.margin = margin(t = margin.len, b = margin.len) + ), + scale_y_continuous( + limits = c(1 - overlap.gene.gap, 1 + overlap.gene.gap * (group.num)), + expand = c(0, 0), position = "right" + ), + scale_color_manual(values = fill.color), + scale_x_continuous(expand = c(0, 0)), + coord_cartesian(xlim = x.range) + ) +} + +# theme for geom_transcript +#' Theme for geom_transcript. +#' +#' @param overlap.tx.gap The gap between transcript groups. +#' @param group.num The number of groups. +#' @param fill.color Fill color. +#' @param x.range X axis ranges. +#' @param margin.len Top and bottom margin. +#' +#' @return List of layers. +#' @importFrom ggplot2 theme_classic theme element_blank element_text element_rect margin +#' scale_y_continuous scale_color_manual scale_x_continuous coord_cartesian +#' +theme_transcript <- function(overlap.tx.gap, group.num, fill.color, x.range, margin.len) { + list( + theme_classic(), + theme( + axis.line.y = element_blank(), + axis.text.y = element_blank(), + axis.title.y.right = element_text(color = "black", angle = 90, vjust = 0.5), + axis.ticks.y = element_blank(), + axis.text.x = element_blank(), + axis.title.x = element_blank(), + axis.ticks.x = element_blank(), + panel.border = element_rect(colour = "black", fill = NA, size = 1), + plot.margin = margin(t = margin.len, b = margin.len) + ), + scale_y_continuous( + limits = c(1 - overlap.tx.gap, 1 + overlap.tx.gap * (group.num)), + expand = c(0, 0), position = "right" + ), + scale_color_manual(values = fill.color), + scale_x_continuous(expand = c(0, 0)), + coord_cartesian(xlim = x.range) + ) +} + + +# theme for ideogram +#' Theme for geom_ideogram. +#' +#' @return List of layers. +#' @importFrom ggplot2 theme_classic theme element_blank scale_x_continuous scale_y_continuous +#' +theme_ideogram <- function() { + list( + theme_classic(), + theme( + legend.position = "none", + axis.title = element_blank(), + axis.text = element_blank(), + axis.ticks = element_blank(), + axis.line = element_blank(), + strip.background = element_blank(), + strip.text = element_blank() + ), + scale_x_continuous(expand = c(0, 0)), + scale_y_continuous(expand = c(0, 0), limits = c(-0.2, 16)) + ) +} + +# theme for peak +#' Theme for geom_peak. +#' +#' @param margin.len Top and bottom margin. +#' @param x.range X axis ranges. +#' +#' @return List of layers. +#' @importFrom ggplot2 theme_classic theme element_blank element_text element_rect margin +#' scale_x_continuous scale_y_continuous coord_cartesian +#' +theme_peak <- function(margin.len, x.range) { + list( + theme_classic(), + theme( + axis.line.y = element_blank(), + axis.text.y = element_blank(), + axis.title.y.right = element_text(color = "black", angle = 90, vjust = 0.5), + axis.ticks.y = element_blank(), + axis.text.x = element_blank(), + axis.title.x = element_blank(), + axis.ticks.x = element_blank(), + panel.border = element_rect(colour = "black", fill = NA, size = 1), + plot.margin = margin(t = margin.len, b = margin.len) + ), + scale_y_continuous( + limits = c(1 - 0.1, 1 + 0.1), + expand = c(0, 0), position = "right" + ), + scale_x_continuous(expand = c(0, 0)), + coord_cartesian(xlim = x.range) + ) +} diff --git a/R/utils.R b/R/utils.R new file mode 100644 index 0000000..aae6c8c --- /dev/null +++ b/R/utils.R @@ -0,0 +1,175 @@ +# select color automatically +AutoColor <- function(data, n, name, key) { + getPalette <- grDevices::colorRampPalette(RColorBrewer::brewer.pal(n, name)) + # sample group with same color + group.info <- unique(data[, key]) + fill.color <- getPalette(length(group.info)) + names(fill.color) <- group.info + return(fill.color) +} + +# ceiling for number bigger than zero, floor for number smaller than zero +CeilingNumber <- function(x, digits = 2) { + # mark number + if (x < 0) { + flag <- -1 + x <- abs(x) + } else { + flag <- 1 + } + # transfrom + if (x > 1) { + x.ceiling <- round(x + 5 * 10^(-digits - 1), digits) + } else if (x > 0) { + x.split <- unlist(strsplit(formatC(x, format = "e"), "e")) + num.part <- as.numeric(x.split[1]) + sci.part <- as.numeric(x.split[2]) + valid.digits <- digits - 1 + x.ceiling <- round(num.part + 5 * 10^(-valid.digits - 1), valid.digits) * 10^(sci.part) + } + # final number + x.final <- x.ceiling * flag + return(x.final) +} + +# get gene and transcript group +# divide genes to non-overlap groups +# GetGeneGroup = function(gene.gr, fc = "queryHits",sc= "subjectHits", overlap.gene.gap=1){ +# overlap.df = IRanges::findOverlaps(gene.gr,gene.gr, ignore.strand=TRUE) %>% as.data.frame() +# overlap.list = lapply(split(overlap.df,overlap.df[,fc]), function(x){ +# x[, sc] +# }) +# group.idx = rep(1, length(unique(overlap.df[,fc]))) +# for (i in seq_along(overlap.list)) { +# ovrlap.vec <- overlap.list[[i]] +# curr.group = group.idx[i] +# remain.vec = setdiff(ovrlap.vec, i) +# for (j in remain.vec) { +# if(group.idx[j] == curr.group){ +# group.idx[j] = curr.group + overlap.gene.gap +# } +# } +# } +# return(group.idx) +# } +GetGeneGroup <- function(gene.gr, fc = "queryHits", sc = "subjectHits", overlap.gene.gap = 1) { + overlap.df <- IRanges::findOverlaps(gene.gr, gene.gr, ignore.strand = TRUE) %>% + as.data.frame() %>% + dplyr::arrange(.data[[fc]], .data[[sc]]) + overlap.list <- lapply(split(overlap.df, overlap.df[, fc]), function(x) { + x[, sc] + }) + overlap.list <- overlap.list[order(sapply(overlap.list, length))] + group.idx <- rep(1, length(unique(overlap.df[, fc]))) + for (i in names(overlap.list)) { + i <- as.numeric(i) + ovrlap.vec <- overlap.list[[i]] + curr.group <- group.idx[i] + remain.vec <- setdiff(ovrlap.vec, i) + for (j in remain.vec) { + if (group.idx[j] == curr.group) { + group.idx[j] <- curr.group + overlap.gene.gap + } + } + } + return(group.idx) +} + +# SplitExonUTR(exon.df = gene.info.used.exon, utr.df = gene.info.used.utr) +# substract UTR from exon +SplitExonUTR <- function(exon.df, utr.df) { + # get metadata + exon.meta <- exon.df[c("gene_name", "type", "gene_type", "group")] %>% unique() + # get list + exon.list <- split(exon.df, exon.df$gene_name) + utr.list <- split(utr.df, utr.df$gene_name) + # all genes + gene.process <- union(names(exon.list), names(utr.list)) + # results list + final.utr.list <- list() + final.exon.list <- list() + # process + for (gene in gene.process) { + gene.exon <- exon.list[[gene]] + gene.utr <- utr.list[[gene]] + if (is.null(gene.exon)) { + final.utr.list[[gene]] <- gene.utr + } else if (is.null(gene.utr)) { + final.exon.list[[gene]] <- gene.exon + } else { + exon.gr <- GenomicRanges::makeGRangesFromDataFrame(gene.exon, + ignore.strand = FALSE, keep.extra.columns = TRUE, + seqnames.field = c("seqnames"), + start.field = "start", + end.field = "end", + strand.field = "strand" + ) + utr.gr <- GenomicRanges::makeGRangesFromDataFrame(gene.utr, + ignore.strand = FALSE, keep.extra.columns = TRUE, + seqnames.field = c("seqnames"), + start.field = "start", + end.field = "end", + strand.field = "strand" + ) + pure.exon <- GenomicRanges::setdiff(exon.gr, utr.gr) %>% as.data.frame() + pure.exon$gene_name <- gene + pure.exon <- merge(pure.exon, exon.meta, by = "gene_name") %>% dplyr::select(-"width") + final.exon.list[[gene]] <- pure.exon + final.utr.list[[gene]] <- gene.utr + } + } + final.utr <- do.call(rbind, final.utr.list) + rownames(final.utr) <- NULL + final.exon <- do.call(rbind, final.exon.list) + rownames(final.exon) <- NULL + return(list(exon = final.exon, utr = final.utr)) +} + +# substract UTR from exon +SplitTxExonUTR <- function(exon.df, utr.df) { + # get metadata + exon.meta <- exon.df[c("transcript_name", "type", "group")] %>% unique() + # get list + exon.list <- split(exon.df, exon.df$transcript_name) + utr.list <- split(utr.df, utr.df$transcript_name) + # all transcripts + tx.process <- union(names(exon.list), names(utr.list)) + # results list + final.utr.list <- list() + final.exon.list <- list() + # process + for (tx in tx.process) { + tx.exon <- exon.list[[tx]] + tx.utr <- utr.list[[tx]] + if (is.null(tx.exon)) { + final.utr.list[[tx]] <- tx.utr + } else if (is.null(tx.utr)) { + final.exon.list[[tx]] <- tx.exon + } else { + exon.gr <- GenomicRanges::makeGRangesFromDataFrame(tx.exon, + ignore.strand = FALSE, keep.extra.columns = TRUE, + seqnames.field = c("seqnames"), + start.field = "start", + end.field = "end", + strand.field = "strand" + ) + utr.gr <- GenomicRanges::makeGRangesFromDataFrame(tx.utr, + ignore.strand = FALSE, keep.extra.columns = TRUE, + seqnames.field = c("seqnames"), + start.field = "start", + end.field = "end", + strand.field = "strand" + ) + pure.exon <- GenomicRanges::setdiff(exon.gr, utr.gr) %>% as.data.frame() + pure.exon$transcript_name <- tx + pure.exon <- merge(pure.exon, exon.meta, by = "transcript_name") %>% dplyr::select(-"width") + final.exon.list[[tx]] <- pure.exon + final.utr.list[[tx]] <- tx.utr + } + } + final.utr <- do.call(rbind, final.utr.list) + rownames(final.utr) <- NULL + final.exon <- do.call(rbind, final.exon.list) + rownames(final.exon) <- NULL + return(list(exon = final.exon, utr = final.utr)) +} diff --git a/README.Rmd b/README.Rmd new file mode 100644 index 0000000..6d9b8c9 --- /dev/null +++ b/README.Rmd @@ -0,0 +1,222 @@ +--- +output: github_document +--- + + + +```{r, include = FALSE} +knitr::opts_chunk$set( + collapse = TRUE, + comment = "#>", + fig.path = "man/figures/README-", + out.width = "100%", + dpi=60 +) +``` + +# ggcoverage - Visualize and annotate genomic coverage with ggplot2 + + + +## Introduction + The goal of `ggcoverage` is simplify the process of visualizing genomic coverage. It contains three main parts: + +* **Load the data**: `ggcoverage` can load bam, bigwig (.bw), bedgraph file from various NGS data, including RNA-seq, ChIP-seq, ATAC-seq, et al. +* **Create genomic coverage plot** +* **Add annotaions**: `ggcoverage` supports four different annotaions: + * **gene annotaion**: Visualize genomic coverage across whole gene + * **transcription annotion**: Visualize genomic coverage across different transcripts + * **ideogram annotation**: Visualize the region showing on whole chromosome + * **peak annotation**: Visualize genomic coverage and peak identified. + +`ggcoverage` utilizes `ggplot2` plotting system, so its usage is ggplot2-style! + + +## Installation +`ggcoverage` is an R package distributed as part of the [Bioconductor](http://bioconductor.org) project and [CRAN](https://cran.r-project.org/). +To install the package, start R and enter: + +```{r install, eval=FALSE} +# install via Bioconductor +if (!requireNamespace("BiocManager", quietly=TRUE)) + install.packages("BiocManager") +BiocManager::install("ggcoverage") + +# install via CRAN +install.package("ggcoverage") + +# install via Github +# install.package("remotes") #In case you have not installed it. +remotes::install_github("showteeth/ggcoverage") +``` + +Once `ggcoverage` is installed, it can be loaded by the following command. + +```{r library, message=FALSE, warning=FALSE} +library("rtracklayer") +library("ggcoverage") +``` + + +## RNA-seq data +### Load the data +The RNA-seq data used here are from [Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells](https://bioconductor.org/packages/release/data/experiment/html/RNAseqData.HNRNPC.bam.chr14.html), we select four sample to use as example: ERR127307_chr14, ERR127306_chr14, ERR127303_chr14, ERR127302_chr14, and all bam files are converted to bigwig file with [deeptools](https://deeptools.readthedocs.io/en/develop/). + +Load metadata: +```{r load_metadata} +# load metadata +meta.file <- system.file("extdata", "RNA-seq", "meta_info.csv", package = "ggcoverage") +sample.meta = read.csv(meta.file) +sample.meta +``` + +Load track files: +```{r load_track} +# track folder +track.folder = system.file("extdata", "RNA-seq", package = "ggcoverage") +# load bigwig file +track.df = LoadTrackFile(track.folder = track.folder, format = "bw", + meta.info = sample.meta) +# check data +head(track.df) +``` + +Prepare mark region: +```{r prepare_mark} +# create mark region +mark.region=data.frame(start=c(21678900,21732001,21737590), + end=c(21679900,21732400,21737650), + label=c("M1", "M2", "M3")) +# check data +mark.region +``` + +Load GTF file: +```{r load_gtf} +gtf.file = system.file("extdata", "used_hg19.gtf", package = "ggcoverage") +gtf.gr = rtracklayer::import.gff(con = gtf.file, format = 'gtf') +``` + +### Basic coverage +```{r basic_coverage, warning=FALSE, fig.height = 6, fig.width = 12, fig.align = "center"} +basic.coverage = ggcoverage(data = track.df, color = "auto", + mark.region = mark.region, range.position = "out") +basic.coverage +``` + +You can also change Y axis style: +```{r basic_coverage_2, warning=FALSE, fig.height = 6, fig.width = 12, fig.align = "center"} +basic.coverage = ggcoverage(data = track.df, color = "auto", + mark.region = mark.region, range.position = "in") +basic.coverage +``` + + +### Add gene annotation +```{r gene_coverage, warning=FALSE, fig.height = 8, fig.width = 12, fig.align = "center"} +basic.coverage + + geom_gene(gtf.gr=gtf.gr) +``` + + +### Add transcript annotation +```{r transcript_coverage, warning=FALSE, fig.height = 12, fig.width = 12, fig.align = "center"} +basic.coverage + + geom_transcript(gtf.gr=gtf.gr,label.vjust = 1.5) +``` + + +### Add ideogram +```{r ideogram_coverage_1, warning=FALSE, fig.height = 10, fig.width = 12, fig.align = "center"} +basic.coverage + + geom_gene(gtf.gr=gtf.gr) + + geom_ideogram(genome = "hg19",plot.space = 0) +``` + +```{r ideogram_coverage_2, warning=FALSE, fig.height = 14, fig.width = 12, fig.align = "center"} +basic.coverage + + geom_transcript(gtf.gr=gtf.gr,label.vjust = 1.5) + + geom_ideogram(genome = "hg19",plot.space = 0) +``` + +## ChIP-seq data +The ChIP-seq data used here are from [DiffBind](https://bioconductor.org/packages/release/bioc/html/DiffBind.html), I select four sample to use as example: Chr18_MCF7_input, Chr18_MCF7_ER_1, Chr18_MCF7_ER_3, Chr18_MCF7_ER_2, and all bam files are converted to bigwig file with [deeptools](https://deeptools.readthedocs.io/en/develop/). + +Create metadata: +```{r load_metadata_chip} +# load metadata +sample.meta = data.frame(SampleName=c('Chr18_MCF7_ER_1','Chr18_MCF7_ER_2','Chr18_MCF7_ER_3','Chr18_MCF7_input'), + Type = c("MCF7_ER_1","MCF7_ER_2","MCF7_ER_3","MCF7_input"), + Group = c("IP", "IP", "IP", "Input")) +sample.meta +``` + +Load track files: +```{r load_track_chip} +# track folder +track.folder = system.file("extdata", "ChIP-seq", package = "ggcoverage") +# load bigwig file +track.df = LoadTrackFile(track.folder = track.folder, format = "bw", + meta.info = sample.meta) +# check data +head(track.df) +``` + +Prepare mark region: +```{r prepare_mark_chip} +# create mark region +mark.region=data.frame(start=c(76822533), + end=c(76823743), + label=c("Promoter")) +# check data +mark.region +``` + +### Basic track +```{r basic_coverage_chip, warning=FALSE, fig.height = 6, fig.width = 12, fig.align = "center"} +basic.coverage = ggcoverage(data = track.df, color = "auto", region = "chr18:76822285-76900000", + mark.region=mark.region, show.mark.label = FALSE) +basic.coverage +``` + +### Add annotations +Add **gene**, **ideogram** and **peak** annotaions. To create peak annotaion, we first **get consensus peaks** with [MSPC](https://github.com/Genometric/MSPC), you can also use [DEbChIP's](https://github.com/showteeth/DEbChIP) `GetConsensusPeak` (`MSPC`'s wrapper) to do this. + +```{r peak_coverage, warning=FALSE, fig.height = 10, fig.width = 12, fig.align = "center"} +# get consensus peak file +peak.file = system.file("extdata", "ChIP-seq", "consensus.peak", package = "ggcoverage") + +basic.coverage + + geom_gene(gtf.gr=gtf.gr) + + geom_peak(bed.file = peak.file) + + geom_ideogram(genome = "hg19",plot.space = 0) +``` + +## Code of Conduct + + Please note that the `ggcoverage` project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms. + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/README.md b/README.md new file mode 100644 index 0000000..b4be1ae --- /dev/null +++ b/README.md @@ -0,0 +1,287 @@ + + + +# ggcoverage - Visualize and annotate genomic coverage with ggplot2 + + + +## Introduction + +The goal of `ggcoverage` is simplify the process of visualizing genomic +coverage. It contains three main parts: + +- **Load the data**: `ggcoverage` can load bam, bigwig (.bw), bedgraph + file from various NGS data, including RNA-seq, ChIP-seq, ATAC-seq, + et al. +- **Create genomic coverage plot** +- **Add annotaions**: `ggcoverage` supports four different annotaions: + - **gene annotaion**: Visualize genomic coverage across whole gene + - **transcription annotion**: Visualize genomic coverage across + different transcripts + - **ideogram annotation**: Visualize the region showing on whole + chromosome + - **peak annotation**: Visualize genomic coverage and peak + identified. + +`ggcoverage` utilizes `ggplot2` plotting system, so its usage is +ggplot2-style! + +## Installation + +`ggcoverage` is an R package distributed as part of the +[Bioconductor](http://bioconductor.org) project and +[CRAN](https://cran.r-project.org/). To install the package, start R and +enter: + +``` r +# install via Bioconductor +if (!requireNamespace("BiocManager", quietly=TRUE)) + install.packages("BiocManager") +BiocManager::install("ggcoverage") + +# install via CRAN +install.package("ggcoverage") + +# install via Github +# install.package("remotes") #In case you have not installed it. +remotes::install_github("showteeth/ggcoverage") +``` + +Once `ggcoverage` is installed, it can be loaded by the following +command. + +``` r +library("rtracklayer") +library("ggcoverage") +``` + +## RNA-seq data + +### Load the data + +The RNA-seq data used here are from [Transcription profiling by high +throughput sequencing of HNRNPC knockdown and control HeLa +cells](https://bioconductor.org/packages/release/data/experiment/html/RNAseqData.HNRNPC.bam.chr14.html), +we select four sample to use as example: ERR127307\_chr14, +ERR127306\_chr14, ERR127303\_chr14, ERR127302\_chr14, and all bam files +are converted to bigwig file with +[deeptools](https://deeptools.readthedocs.io/en/develop/). + +Load metadata: + +``` r +# load metadata +meta.file <- system.file("extdata", "RNA-seq", "meta_info.csv", package = "ggcoverage") +sample.meta = read.csv(meta.file) +sample.meta +#> SampleName Type Group +#> 1 ERR127302_chr14 KO_rep1 KO +#> 2 ERR127303_chr14 KO_rep2 KO +#> 3 ERR127306_chr14 WT_rep1 WT +#> 4 ERR127307_chr14 WT_rep2 WT +``` + +Load track files: + +``` r +# track folder +track.folder = system.file("extdata", "RNA-seq", package = "ggcoverage") +# load bigwig file +track.df = LoadTrackFile(track.folder = track.folder, format = "bw", + meta.info = sample.meta) +# check data +head(track.df) +#> seqnames start end score Type Group +#> 1 chr14 21572751 21630650 0 KO_rep1 KO +#> 2 chr14 21630651 21630700 1 KO_rep1 KO +#> 3 chr14 21630701 21630800 4 KO_rep1 KO +#> 4 chr14 21630801 21657350 0 KO_rep1 KO +#> 5 chr14 21657351 21657450 1 KO_rep1 KO +#> 6 chr14 21657451 21663550 0 KO_rep1 KO +``` + +Prepare mark region: + +``` r +# create mark region +mark.region=data.frame(start=c(21678900,21732001,21737590), + end=c(21679900,21732400,21737650), + label=c("M1", "M2", "M3")) +# check data +mark.region +#> start end label +#> 1 21678900 21679900 M1 +#> 2 21732001 21732400 M2 +#> 3 21737590 21737650 M3 +``` + +Load GTF file: + +``` r +gtf.file = system.file("extdata", "used_hg19.gtf", package = "ggcoverage") +gtf.gr = rtracklayer::import.gff(con = gtf.file, format = 'gtf') +``` + +### Basic coverage + +``` r +basic.coverage = ggcoverage(data = track.df, color = "auto", + mark.region = mark.region, range.position = "out") +basic.coverage +``` + + + +You can also change Y axis style: + +``` r +basic.coverage = ggcoverage(data = track.df, color = "auto", + mark.region = mark.region, range.position = "in") +basic.coverage +``` + + + +### Add gene annotation + +``` r +basic.coverage + + geom_gene(gtf.gr=gtf.gr) +``` + + + +### Add transcript annotation + +``` r +basic.coverage + + geom_transcript(gtf.gr=gtf.gr,label.vjust = 1.5) +``` + + + +### Add ideogram + +``` r +basic.coverage + + geom_gene(gtf.gr=gtf.gr) + + geom_ideogram(genome = "hg19",plot.space = 0) +#> [1] "hg19" +#> Loading ideogram... +#> Loading ranges... +#> Scale for 'x' is already present. Adding another scale for 'x', which will +#> replace the existing scale. +``` + + + +``` r +basic.coverage + + geom_transcript(gtf.gr=gtf.gr,label.vjust = 1.5) + + geom_ideogram(genome = "hg19",plot.space = 0) +#> [1] "hg19" +#> Loading ideogram... +#> Loading ranges... +#> Scale for 'x' is already present. Adding another scale for 'x', which will +#> replace the existing scale. +``` + + + +## ChIP-seq data + +The ChIP-seq data used here are from +[DiffBind](https://bioconductor.org/packages/release/bioc/html/DiffBind.html), +I select four sample to use as example: Chr18\_MCF7\_input, +Chr18\_MCF7\_ER\_1, Chr18\_MCF7\_ER\_3, Chr18\_MCF7\_ER\_2, and all bam +files are converted to bigwig file with +[deeptools](https://deeptools.readthedocs.io/en/develop/). + +Create metadata: + +``` r +# load metadata +sample.meta = data.frame(SampleName=c('Chr18_MCF7_ER_1','Chr18_MCF7_ER_2','Chr18_MCF7_ER_3','Chr18_MCF7_input'), + Type = c("MCF7_ER_1","MCF7_ER_2","MCF7_ER_3","MCF7_input"), + Group = c("IP", "IP", "IP", "Input")) +sample.meta +#> SampleName Type Group +#> 1 Chr18_MCF7_ER_1 MCF7_ER_1 IP +#> 2 Chr18_MCF7_ER_2 MCF7_ER_2 IP +#> 3 Chr18_MCF7_ER_3 MCF7_ER_3 IP +#> 4 Chr18_MCF7_input MCF7_input Input +``` + +Load track files: + +``` r +# track folder +track.folder = system.file("extdata", "ChIP-seq", package = "ggcoverage") +# load bigwig file +track.df = LoadTrackFile(track.folder = track.folder, format = "bw", + meta.info = sample.meta) +# check data +head(track.df) +#> seqnames start end score Type Group +#> 1 chr18 76799701 76800000 439.316 MCF7_ER_1 IP +#> 2 chr18 76800001 76800300 658.974 MCF7_ER_1 IP +#> 3 chr18 76800301 76800600 219.658 MCF7_ER_1 IP +#> 4 chr18 76800601 76800900 658.974 MCF7_ER_1 IP +#> 5 chr18 76800901 76801200 0.000 MCF7_ER_1 IP +#> 6 chr18 76801201 76801500 219.658 MCF7_ER_1 IP +``` + +Prepare mark region: + +``` r +# create mark region +mark.region=data.frame(start=c(76822533), + end=c(76823743), + label=c("Promoter")) +# check data +mark.region +#> start end label +#> 1 76822533 76823743 Promoter +``` + +### Basic track + +``` r +basic.coverage = ggcoverage(data = track.df, color = "auto", region = "chr18:76822285-76900000", + mark.region=mark.region, show.mark.label = FALSE) +basic.coverage +``` + + + +### Add annotations + +Add **gene**, **ideogram** and **peak** annotaions. To create peak +annotaion, we first **get consensus peaks** with +[MSPC](https://github.com/Genometric/MSPC), you can also use +[DEbChIP’s](https://github.com/showteeth/DEbChIP) `GetConsensusPeak` +(`MSPC`’s wrapper) to do this. + +``` r +# get consensus peak file +peak.file = system.file("extdata", "ChIP-seq", "consensus.peak", package = "ggcoverage") + +basic.coverage + + geom_gene(gtf.gr=gtf.gr) + + geom_peak(bed.file = peak.file) + + geom_ideogram(genome = "hg19",plot.space = 0) +#> [1] "hg19" +#> Loading ideogram... +#> Loading ranges... +#> Scale for 'x' is already present. Adding another scale for 'x', which will +#> replace the existing scale. +``` + + + +## Code of Conduct + +Please note that the `ggcoverage` project is released with a +[Contributor Code of +Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html). +By contributing to this project, you agree to abide by its terms. diff --git a/ggcoverage.Rproj b/ggcoverage.Rproj new file mode 100644 index 0000000..497f8bf --- /dev/null +++ b/ggcoverage.Rproj @@ -0,0 +1,20 @@ +Version: 1.0 + +RestoreWorkspace: Default +SaveWorkspace: Default +AlwaysSaveHistory: Default + +EnableCodeIndexing: Yes +UseSpacesForTab: Yes +NumSpacesForTab: 2 +Encoding: UTF-8 + +RnwWeave: Sweave +LaTeX: pdfLaTeX + +AutoAppendNewline: Yes +StripTrailingWhitespace: Yes + +BuildType: Package +PackageUseDevtools: Yes +PackageInstallArgs: --no-multiarch --with-keep.source diff --git a/inst/extdata/ChIP-seq/Chr18_MCF7_ER_1.bw b/inst/extdata/ChIP-seq/Chr18_MCF7_ER_1.bw new file mode 100644 index 0000000..bbad4a9 Binary files /dev/null and b/inst/extdata/ChIP-seq/Chr18_MCF7_ER_1.bw differ diff --git a/inst/extdata/ChIP-seq/Chr18_MCF7_ER_2.bw b/inst/extdata/ChIP-seq/Chr18_MCF7_ER_2.bw new file mode 100644 index 0000000..a074cb4 Binary files /dev/null and b/inst/extdata/ChIP-seq/Chr18_MCF7_ER_2.bw differ diff --git a/inst/extdata/ChIP-seq/Chr18_MCF7_ER_3.bw b/inst/extdata/ChIP-seq/Chr18_MCF7_ER_3.bw new file mode 100644 index 0000000..f1ce206 Binary files /dev/null and b/inst/extdata/ChIP-seq/Chr18_MCF7_ER_3.bw differ diff --git a/inst/extdata/ChIP-seq/Chr18_MCF7_input.bw b/inst/extdata/ChIP-seq/Chr18_MCF7_input.bw new file mode 100644 index 0000000..3ba0529 Binary files /dev/null and b/inst/extdata/ChIP-seq/Chr18_MCF7_input.bw differ diff --git a/inst/extdata/ChIP-seq/consensus.peak b/inst/extdata/ChIP-seq/consensus.peak new file mode 100644 index 0000000..bed03c4 --- /dev/null +++ b/inst/extdata/ChIP-seq/consensus.peak @@ -0,0 +1,1215 @@ +chr18 111564 112005 MSPC_Peak_1215 Inf +chr18 150145 150633 MSPC_Peak_1214 259.778 +chr18 189190 189601 MSPC_Peak_1213 Inf +chr18 346464 347342 MSPC_Peak_1212 Inf +chr18 399098 399919 MSPC_Peak_1211 Inf +chr18 489303 490041 MSPC_Peak_1210 168.244 +chr18 499098 500193 MSPC_Peak_1209 Inf +chr18 503660 504550 MSPC_Peak_1208 Inf +chr18 531676 532231 MSPC_Peak_1207 Inf +chr18 568323 569333 MSPC_Peak_1206 Inf +chr18 589057 589875 MSPC_Peak_1205 Inf +chr18 649223 649881 MSPC_Peak_1204 157.143 +chr18 651923 652540 MSPC_Peak_1203 Inf +chr18 770253 770995 MSPC_Peak_1202 Inf +chr18 832068 832623 MSPC_Peak_1201 240.93 +chr18 845016 845798 MSPC_Peak_1200 Inf +chr18 851682 852151 MSPC_Peak_1199 160.185 +chr18 922913 923784 MSPC_Peak_1198 Inf +chr18 1075317 1076051 MSPC_Peak_1197 Inf +chr18 1150202 1150823 MSPC_Peak_1196 228.483 +chr18 1221457 1222148 MSPC_Peak_1195 Inf +chr18 1241658 1242294 MSPC_Peak_1194 Inf +chr18 1265407 1266201 MSPC_Peak_1193 Inf +chr18 1270024 1270580 MSPC_Peak_1192 Inf +chr18 1302122 1303518 MSPC_Peak_1191 Inf +chr18 1359568 1360194 MSPC_Peak_1190 Inf +chr18 1379869 1380606 MSPC_Peak_1189 282.062 +chr18 1392705 1395038 MSPC_Peak_1188 Inf +chr18 1459985 1460805 MSPC_Peak_1187 Inf +chr18 1618064 1618613 MSPC_Peak_1186 257.048 +chr18 1903962 1904598 MSPC_Peak_1185 Inf +chr18 1905552 1907123 MSPC_Peak_1184 Inf +chr18 1995276 1995878 MSPC_Peak_1183 219.031 +chr18 2070429 2071160 MSPC_Peak_1182 Inf +chr18 2084320 2084599 MSPC_Peak_1181 135.327 +chr18 2096168 2097256 MSPC_Peak_1180 Inf +chr18 2171750 2172367 MSPC_Peak_1179 234.217 +chr18 2185248 2186003 MSPC_Peak_1178 Inf +chr18 2189622 2190501 MSPC_Peak_1177 Inf +chr18 2191100 2191859 MSPC_Peak_1176 Inf +chr18 2207079 2207923 MSPC_Peak_1175 Inf +chr18 2237591 2238325 MSPC_Peak_1174 Inf +chr18 2258565 2259446 MSPC_Peak_1173 Inf +chr18 2264243 2265010 MSPC_Peak_1172 Inf +chr18 2302510 2303474 MSPC_Peak_1171 Inf +chr18 2303787 2305169 MSPC_Peak_1170 Inf +chr18 2336844 2337465 MSPC_Peak_1169 109.906 +chr18 2340224 2340977 MSPC_Peak_1168 Inf +chr18 2381821 2383039 MSPC_Peak_1167 Inf +chr18 2385043 2386134 MSPC_Peak_1166 Inf +chr18 2461151 2461888 MSPC_Peak_1165 Inf +chr18 2480408 2481266 MSPC_Peak_1164 Inf +chr18 2482726 2483671 MSPC_Peak_1163 Inf +chr18 2515954 2516709 MSPC_Peak_1162 Inf +chr18 2528637 2529792 MSPC_Peak_1161 Inf +chr18 2538810 2539231 MSPC_Peak_1160 152.855 +chr18 2564447 2565046 MSPC_Peak_1159 217.649 +chr18 2587766 2588364 MSPC_Peak_1158 224.56 +chr18 2741492 2742201 MSPC_Peak_1157 205.249 +chr18 2753087 2753745 MSPC_Peak_1156 Inf +chr18 2755726 2756218 MSPC_Peak_1155 Inf +chr18 2876749 2877359 MSPC_Peak_1154 Inf +chr18 2893016 2893589 MSPC_Peak_1153 Inf +chr18 2894426 2895148 MSPC_Peak_1152 Inf +chr18 3026520 3027198 MSPC_Peak_1151 Inf +chr18 3037363 3037811 MSPC_Peak_1150 155.358 +chr18 3043176 3043735 MSPC_Peak_1149 106.609 +chr18 3044697 3045948 MSPC_Peak_1148 Inf +chr18 3054212 3054717 MSPC_Peak_1147 302.912 +chr18 3058195 3058898 MSPC_Peak_1146 258.353 +chr18 3107659 3108376 MSPC_Peak_1145 Inf +chr18 3119806 3120502 MSPC_Peak_1144 203.582 +chr18 3217855 3218424 MSPC_Peak_1143 Inf +chr18 3236205 3237085 MSPC_Peak_1142 Inf +chr18 3256503 3257235 MSPC_Peak_1141 Inf +chr18 3260964 3262790 MSPC_Peak_1140 Inf +chr18 3268502 3269453 MSPC_Peak_1139 Inf +chr18 3283015 3283974 MSPC_Peak_1138 109.238 +chr18 3313015 3313936 MSPC_Peak_1137 Inf +chr18 3319911 3320530 MSPC_Peak_1136 Inf +chr18 3321370 3321864 MSPC_Peak_1135 Inf +chr18 3330424 3331167 MSPC_Peak_1134 293.255 +chr18 3383388 3383938 MSPC_Peak_1133 Inf +chr18 3384622 3385576 MSPC_Peak_1132 Inf +chr18 3388774 3389477 MSPC_Peak_1131 Inf +chr18 3395286 3395996 MSPC_Peak_1130 Inf +chr18 3396960 3397851 MSPC_Peak_1129 Inf +chr18 3401903 3402906 MSPC_Peak_1128 Inf +chr18 3405074 3405642 MSPC_Peak_1127 Inf +chr18 3409045 3409445 MSPC_Peak_1126 Inf +chr18 3410942 3411724 MSPC_Peak_1125 259.141 +chr18 3446396 3447164 MSPC_Peak_1124 Inf +chr18 3448746 3449763 MSPC_Peak_1123 220.848 +chr18 3456525 3457309 MSPC_Peak_1122 267.865 +chr18 3511767 3512521 MSPC_Peak_1121 Inf +chr18 3530427 3531075 MSPC_Peak_1120 Inf +chr18 3538294 3538946 MSPC_Peak_1119 102.306 +chr18 3585638 3586344 MSPC_Peak_1118 Inf +chr18 3590063 3590817 MSPC_Peak_1117 Inf +chr18 3593303 3595168 MSPC_Peak_1116 Inf +chr18 3595485 3596412 MSPC_Peak_1115 Inf +chr18 3602697 3604001 MSPC_Peak_1114 Inf +chr18 3623580 3624715 MSPC_Peak_1113 Inf +chr18 3625528 3626049 MSPC_Peak_1112 282.198 +chr18 3646057 3646765 MSPC_Peak_1111 Inf +chr18 3667056 3668035 MSPC_Peak_1110 Inf +chr18 3688544 3689736 MSPC_Peak_1109 Inf +chr18 3692067 3692793 MSPC_Peak_1108 Inf +chr18 3706380 3707122 MSPC_Peak_1107 Inf +chr18 3709111 3709791 MSPC_Peak_1106 256.609 +chr18 3710576 3711402 MSPC_Peak_1105 Inf +chr18 3720847 3724009 MSPC_Peak_1104 Inf +chr18 3726393 3727070 MSPC_Peak_1103 Inf +chr18 3773223 3773835 MSPC_Peak_1102 169.82 +chr18 3832054 3832727 MSPC_Peak_1101 172.563 +chr18 3878315 3878972 MSPC_Peak_1100 Inf +chr18 3879499 3880002 MSPC_Peak_1099 185.682 +chr18 3966630 3967551 MSPC_Peak_1098 112.486 +chr18 5292782 5293101 MSPC_Peak_1097 119.45 +chr18 5787923 5788474 MSPC_Peak_1096 Inf +chr18 6355951 6356536 MSPC_Peak_1095 Inf +chr18 6434999 6435338 MSPC_Peak_1094 166.708 +chr18 6509435 6510470 MSPC_Peak_1093 Inf +chr18 6661793 6662337 MSPC_Peak_1092 172.513 +chr18 6719280 6720023 MSPC_Peak_1091 Inf +chr18 6746555 6746966 MSPC_Peak_1090 118.543 +chr18 6764328 6764796 MSPC_Peak_1089 Inf +chr18 6782747 6783308 MSPC_Peak_1088 Inf +chr18 7003493 7003812 MSPC_Peak_1087 197.925 +chr18 7109009 7109651 MSPC_Peak_1086 Inf +chr18 7300961 7301449 MSPC_Peak_1085 200.469 +chr18 7417431 7417990 MSPC_Peak_1084 285.059 +chr18 7645792 7646553 MSPC_Peak_1083 196.458 +chr18 7754681 7755475 MSPC_Peak_1082 Inf +chr18 7834400 7834820 MSPC_Peak_1081 Inf +chr18 7877422 7878220 MSPC_Peak_1080 Inf +chr18 7904507 7905121 MSPC_Peak_1079 Inf +chr18 7922070 7922813 MSPC_Peak_1078 Inf +chr18 7929116 7929781 MSPC_Peak_1077 Inf +chr18 7941495 7941949 MSPC_Peak_1076 Inf +chr18 7945906 7946599 MSPC_Peak_1075 178.439 +chr18 8229678 8230369 MSPC_Peak_1074 Inf +chr18 8458712 8459419 MSPC_Peak_1073 Inf +chr18 8499960 8500449 MSPC_Peak_1072 185.602 +chr18 8623524 8624264 MSPC_Peak_1071 Inf +chr18 8642134 8642584 MSPC_Peak_1070 220.378 +chr18 8643305 8643854 MSPC_Peak_1069 119.59 +chr18 8683696 8684055 MSPC_Peak_1068 213.781 +chr18 8717758 8718290 MSPC_Peak_1067 108.143 +chr18 8730203 8730867 MSPC_Peak_1066 Inf +chr18 8791030 8791833 MSPC_Peak_1065 Inf +chr18 8792769 8793525 MSPC_Peak_1064 151.838 +chr18 8957865 8958480 MSPC_Peak_1063 291.759 +chr18 8980560 8981461 MSPC_Peak_1062 Inf +chr18 8998743 8999446 MSPC_Peak_1061 Inf +chr18 9061373 9061851 MSPC_Peak_1060 115.714 +chr18 9063674 9064377 MSPC_Peak_1059 Inf +chr18 9067740 9068283 MSPC_Peak_1058 Inf +chr18 9092453 9093078 MSPC_Peak_1057 Inf +chr18 9094367 9095200 MSPC_Peak_1056 Inf +chr18 9105355 9105931 MSPC_Peak_1055 128.509 +chr18 9132971 9133731 MSPC_Peak_1054 Inf +chr18 9136245 9137106 MSPC_Peak_1053 Inf +chr18 9273432 9274163 MSPC_Peak_1052 Inf +chr18 9329161 9329936 MSPC_Peak_1051 Inf +chr18 9341870 9342462 MSPC_Peak_1050 218.835 +chr18 9348172 9349285 MSPC_Peak_1049 Inf +chr18 9366097 9366788 MSPC_Peak_1048 Inf +chr18 9417120 9417856 MSPC_Peak_1047 186.889 +chr18 9474926 9475837 MSPC_Peak_1046 Inf +chr18 9494857 9495354 MSPC_Peak_1045 217.744 +chr18 9495713 9496529 MSPC_Peak_1044 Inf +chr18 9513859 9514780 MSPC_Peak_1043 Inf +chr18 9608633 9609320 MSPC_Peak_1042 Inf +chr18 9613374 9614232 MSPC_Peak_1041 Inf +chr18 9653214 9653915 MSPC_Peak_1040 Inf +chr18 9700190 9700893 MSPC_Peak_1039 Inf +chr18 9701545 9702167 MSPC_Peak_1038 Inf +chr18 9704854 9705806 MSPC_Peak_1037 Inf +chr18 9705987 9707142 MSPC_Peak_1036 195.091 +chr18 9709478 9710153 MSPC_Peak_1035 Inf +chr18 9717434 9718084 MSPC_Peak_1034 Inf +chr18 9719329 9720026 MSPC_Peak_1033 Inf +chr18 9720891 9721431 MSPC_Peak_1032 238.664 +chr18 9736800 9737645 MSPC_Peak_1031 Inf +chr18 9743289 9744220 MSPC_Peak_1030 Inf +chr18 9757377 9758619 MSPC_Peak_1029 Inf +chr18 9763891 9764536 MSPC_Peak_1028 Inf +chr18 9765327 9765962 MSPC_Peak_1027 259.769 +chr18 9779364 9780172 MSPC_Peak_1026 Inf +chr18 9785045 9785804 MSPC_Peak_1025 Inf +chr18 9796926 9797683 MSPC_Peak_1024 Inf +chr18 9803973 9804717 MSPC_Peak_1023 Inf +chr18 9814193 9814877 MSPC_Peak_1022 Inf +chr18 9825272 9826054 MSPC_Peak_1021 Inf +chr18 9849395 9850073 MSPC_Peak_1020 212.943 +chr18 9866337 9867613 MSPC_Peak_1019 Inf +chr18 9869640 9870448 MSPC_Peak_1018 Inf +chr18 9876882 9877380 MSPC_Peak_1017 111.36 +chr18 9898785 9899575 MSPC_Peak_1016 Inf +chr18 9913179 9914063 MSPC_Peak_1015 Inf +chr18 9987723 9988516 MSPC_Peak_1014 Inf +chr18 10015219 10015765 MSPC_Peak_1013 Inf +chr18 10018232 10018604 MSPC_Peak_1012 157.373 +chr18 10023667 10024412 MSPC_Peak_1011 Inf +chr18 10028109 10028627 MSPC_Peak_1010 121.842 +chr18 10035116 10036194 MSPC_Peak_1009 Inf +chr18 10058219 10058903 MSPC_Peak_1008 Inf +chr18 10061897 10062836 MSPC_Peak_1007 Inf +chr18 10070125 10070901 MSPC_Peak_1006 Inf +chr18 10086145 10087209 MSPC_Peak_1005 Inf +chr18 10094208 10095097 MSPC_Peak_1004 Inf +chr18 10116562 10117248 MSPC_Peak_1003 Inf +chr18 10121823 10122886 MSPC_Peak_1002 Inf +chr18 10128914 10129547 MSPC_Peak_1001 Inf +chr18 10131775 10132569 MSPC_Peak_1000 Inf +chr18 10140774 10141517 MSPC_Peak_999 Inf +chr18 10213368 10213974 MSPC_Peak_998 196.934 +chr18 10235442 10236165 MSPC_Peak_997 157.891 +chr18 10243213 10243868 MSPC_Peak_996 228.199 +chr18 10259427 10260516 MSPC_Peak_995 Inf +chr18 10265573 10266388 MSPC_Peak_994 Inf +chr18 10301654 10302267 MSPC_Peak_993 99.647 +chr18 10317807 10318467 MSPC_Peak_992 Inf +chr18 10379195 10379950 MSPC_Peak_991 Inf +chr18 10408710 10409520 MSPC_Peak_990 Inf +chr18 10417050 10417767 MSPC_Peak_989 Inf +chr18 10444328 10445183 MSPC_Peak_988 Inf +chr18 10579763 10580453 MSPC_Peak_987 Inf +chr18 10658821 10659530 MSPC_Peak_986 122.609 +chr18 10694290 10695633 MSPC_Peak_985 Inf +chr18 10856101 10856893 MSPC_Peak_984 Inf +chr18 10860473 10861622 MSPC_Peak_983 Inf +chr18 10892848 10893710 MSPC_Peak_982 Inf +chr18 10909141 10910079 MSPC_Peak_981 Inf +chr18 10995487 10996105 MSPC_Peak_980 124.273 +chr18 11005384 11006146 MSPC_Peak_979 Inf +chr18 11041196 11041946 MSPC_Peak_978 Inf +chr18 11042082 11042924 MSPC_Peak_977 Inf +chr18 11043681 11044138 MSPC_Peak_976 265.089 +chr18 11106896 11107616 MSPC_Peak_975 237.047 +chr18 11113067 11113657 MSPC_Peak_974 188.895 +chr18 11113826 11114456 MSPC_Peak_973 Inf +chr18 11114561 11115364 MSPC_Peak_972 Inf +chr18 11117864 11118602 MSPC_Peak_971 105.065 +chr18 11119664 11120596 MSPC_Peak_970 Inf +chr18 11135538 11137125 MSPC_Peak_969 Inf +chr18 11147132 11147883 MSPC_Peak_968 Inf +chr18 11155310 11156138 MSPC_Peak_967 Inf +chr18 11177373 11178217 MSPC_Peak_966 Inf +chr18 11268733 11269659 MSPC_Peak_965 Inf +chr18 11323162 11324120 MSPC_Peak_964 Inf +chr18 11423254 11423925 MSPC_Peak_963 291.259 +chr18 11466981 11467309 MSPC_Peak_962 134.659 +chr18 11471746 11472327 MSPC_Peak_961 Inf +chr18 11496295 11497069 MSPC_Peak_960 Inf +chr18 11497386 11498081 MSPC_Peak_959 Inf +chr18 11498517 11499000 MSPC_Peak_958 187.917 +chr18 11500084 11501454 MSPC_Peak_957 Inf +chr18 11800829 11801458 MSPC_Peak_956 250.543 +chr18 11807794 11808429 MSPC_Peak_955 Inf +chr18 11859779 11860585 MSPC_Peak_954 Inf +chr18 11887564 11888185 MSPC_Peak_953 166.908 +chr18 11925802 11926212 MSPC_Peak_952 130.024 +chr18 11983435 11984227 MSPC_Peak_951 Inf +chr18 11995290 11995893 MSPC_Peak_950 185.403 +chr18 12086233 12086774 MSPC_Peak_949 155.248 +chr18 12333741 12334290 MSPC_Peak_948 295.812 +chr18 12336767 12337441 MSPC_Peak_947 Inf +chr18 12410861 12411279 MSPC_Peak_946 213.954 +chr18 12531805 12532441 MSPC_Peak_945 Inf +chr18 12574681 12575283 MSPC_Peak_944 Inf +chr18 12595743 12596412 MSPC_Peak_943 234.675 +chr18 12597605 12598227 MSPC_Peak_942 Inf +chr18 12599364 12600086 MSPC_Peak_941 Inf +chr18 12606703 12607348 MSPC_Peak_940 Inf +chr18 12608355 12608856 MSPC_Peak_939 122.101 +chr18 12612748 12613499 MSPC_Peak_938 Inf +chr18 12624783 12625462 MSPC_Peak_937 Inf +chr18 12640324 12640934 MSPC_Peak_936 196.197 +chr18 12645364 12646319 MSPC_Peak_935 305.999 +chr18 12741195 12741866 MSPC_Peak_934 Inf +chr18 12751907 12752457 MSPC_Peak_933 Inf +chr18 12855912 12856370 MSPC_Peak_932 Inf +chr18 12882763 12883432 MSPC_Peak_931 Inf +chr18 12946527 12947208 MSPC_Peak_930 274.97 +chr18 12948019 12948777 MSPC_Peak_929 Inf +chr18 13001092 13001596 MSPC_Peak_928 111.669 +chr18 13222714 13223893 MSPC_Peak_927 283.554 +chr18 13246121 13247347 MSPC_Peak_926 Inf +chr18 13247531 13248109 MSPC_Peak_925 Inf +chr18 13250662 13251280 MSPC_Peak_924 265.658 +chr18 13253415 13254274 MSPC_Peak_923 Inf +chr18 13259895 13260508 MSPC_Peak_922 105.244 +chr18 13267097 13267966 MSPC_Peak_921 Inf +chr18 13284684 13285694 MSPC_Peak_920 Inf +chr18 13302806 13303367 MSPC_Peak_919 306.157 +chr18 13379783 13381106 MSPC_Peak_918 Inf +chr18 13394625 13395512 MSPC_Peak_917 Inf +chr18 13424532 13425365 MSPC_Peak_916 Inf +chr18 13425417 13426856 MSPC_Peak_915 Inf +chr18 13429538 13430194 MSPC_Peak_914 Inf +chr18 13431619 13432303 MSPC_Peak_913 144.499 +chr18 13435810 13436426 MSPC_Peak_912 Inf +chr18 13445899 13446474 MSPC_Peak_911 Inf +chr18 13470305 13470940 MSPC_Peak_910 284.77 +chr18 13480430 13481169 MSPC_Peak_909 Inf +chr18 13502507 13503426 MSPC_Peak_908 156.704 +chr18 13512814 13513503 MSPC_Peak_907 Inf +chr18 13539197 13541310 MSPC_Peak_906 Inf +chr18 13541835 13542900 MSPC_Peak_905 Inf +chr18 13553062 13553501 MSPC_Peak_904 143.652 +chr18 13565992 13566477 MSPC_Peak_903 120.028 +chr18 13567596 13568330 MSPC_Peak_902 Inf +chr18 13569813 13570772 MSPC_Peak_901 Inf +chr18 13575681 13576240 MSPC_Peak_900 161.92 +chr18 13608146 13609354 MSPC_Peak_899 Inf +chr18 13616435 13617338 MSPC_Peak_898 Inf +chr18 13618918 13619663 MSPC_Peak_897 Inf +chr18 13710392 13710995 MSPC_Peak_896 123.267 +chr18 13724011 13724489 MSPC_Peak_895 129.805 +chr18 13808657 13809536 MSPC_Peak_894 Inf +chr18 13849662 13850221 MSPC_Peak_893 Inf +chr18 13973223 13973761 MSPC_Peak_892 168.763 +chr18 13982834 13984479 MSPC_Peak_891 Inf +chr18 14761119 14761745 MSPC_Peak_890 Inf +chr18 14781526 14782409 MSPC_Peak_889 Inf +chr18 14783889 14784675 MSPC_Peak_888 Inf +chr18 14787629 14788145 MSPC_Peak_887 Inf +chr18 14825140 14825519 MSPC_Peak_886 282.976 +chr18 14842502 14843118 MSPC_Peak_885 164.633 +chr18 14921375 14922498 MSPC_Peak_884 Inf +chr18 14928199 14928885 MSPC_Peak_883 Inf +chr18 14946356 14947027 MSPC_Peak_882 Inf +chr18 14957516 14958024 MSPC_Peak_881 269.368 +chr18 14958634 14959306 MSPC_Peak_880 Inf +chr18 14970109 14970487 MSPC_Peak_879 116.481 +chr18 14975630 14976348 MSPC_Peak_878 Inf +chr18 18654083 18654707 MSPC_Peak_877 Inf +chr18 18654711 18655573 MSPC_Peak_876 Inf +chr18 18658316 18658991 MSPC_Peak_875 310.287 +chr18 18659081 18659807 MSPC_Peak_874 Inf +chr18 18681929 18682653 MSPC_Peak_873 Inf +chr18 18761933 18762285 MSPC_Peak_872 129.267 +chr18 18763554 18764168 MSPC_Peak_871 Inf +chr18 18764169 18764957 MSPC_Peak_870 Inf +chr18 18767838 18768549 MSPC_Peak_869 Inf +chr18 18798397 18799326 MSPC_Peak_868 Inf +chr18 18800519 18801301 MSPC_Peak_867 Inf +chr18 18829259 18829617 MSPC_Peak_866 190.95 +chr18 18831127 18831752 MSPC_Peak_865 Inf +chr18 18840827 18841297 MSPC_Peak_864 180.1 +chr18 18845297 18846217 MSPC_Peak_863 Inf +chr18 18850177 18851236 MSPC_Peak_862 Inf +chr18 18870601 18871608 MSPC_Peak_861 Inf +chr18 18880053 18881228 MSPC_Peak_860 Inf +chr18 18895397 18896294 MSPC_Peak_859 Inf +chr18 18906917 18907641 MSPC_Peak_858 Inf +chr18 18909708 18910866 MSPC_Peak_857 Inf +chr18 18970933 18971643 MSPC_Peak_856 Inf +chr18 18984151 18984938 MSPC_Peak_855 Inf +chr18 19019278 19019832 MSPC_Peak_854 239.872 +chr18 19020323 19021055 MSPC_Peak_853 Inf +chr18 19021530 19022669 MSPC_Peak_852 236.389 +chr18 19033362 19034120 MSPC_Peak_851 242.957 +chr18 19044369 19044851 MSPC_Peak_850 266.457 +chr18 19128469 19128943 MSPC_Peak_849 292.198 +chr18 19130259 19130913 MSPC_Peak_848 Inf +chr18 19218160 19218727 MSPC_Peak_847 222.172 +chr18 19248179 19248866 MSPC_Peak_846 Inf +chr18 19252750 19253421 MSPC_Peak_845 142.086 +chr18 19277540 19278141 MSPC_Peak_844 Inf +chr18 19298348 19298831 MSPC_Peak_843 309.988 +chr18 19357535 19358249 MSPC_Peak_842 Inf +chr18 19445176 19446276 MSPC_Peak_841 Inf +chr18 19560508 19561264 MSPC_Peak_840 Inf +chr18 19570802 19571774 MSPC_Peak_839 Inf +chr18 19601417 19602115 MSPC_Peak_838 Inf +chr18 19602809 19603464 MSPC_Peak_837 164.755 +chr18 19620242 19621035 MSPC_Peak_836 Inf +chr18 19624191 19625031 MSPC_Peak_835 Inf +chr18 19628951 19629783 MSPC_Peak_834 Inf +chr18 19639822 19640220 MSPC_Peak_833 153.503 +chr18 19682961 19683553 MSPC_Peak_832 186.889 +chr18 19693189 19693958 MSPC_Peak_831 Inf +chr18 19708739 19709506 MSPC_Peak_830 Inf +chr18 19723330 19723815 MSPC_Peak_829 Inf +chr18 19748164 19749616 MSPC_Peak_828 Inf +chr18 19762694 19763348 MSPC_Peak_827 Inf +chr18 19763689 19764246 MSPC_Peak_826 162.299 +chr18 19800111 19800625 MSPC_Peak_825 Inf +chr18 19803469 19804140 MSPC_Peak_824 Inf +chr18 19806578 19807318 MSPC_Peak_823 Inf +chr18 19807601 19808328 MSPC_Peak_822 Inf +chr18 19812887 19813706 MSPC_Peak_821 Inf +chr18 19834095 19834844 MSPC_Peak_820 Inf +chr18 19843025 19843619 MSPC_Peak_819 Inf +chr18 19866480 19867254 MSPC_Peak_818 Inf +chr18 19873022 19873523 MSPC_Peak_817 135.148 +chr18 19969604 19970113 MSPC_Peak_816 236.04 +chr18 19979769 19980311 MSPC_Peak_815 260.646 +chr18 19992375 19992850 MSPC_Peak_814 223.802 +chr18 20011356 20011990 MSPC_Peak_813 251.352 +chr18 20013902 20014367 MSPC_Peak_812 113.92 +chr18 20037969 20038705 MSPC_Peak_811 Inf +chr18 20045829 20047227 MSPC_Peak_810 Inf +chr18 20050327 20051453 MSPC_Peak_809 Inf +chr18 20051542 20052390 MSPC_Peak_808 Inf +chr18 20122011 20122935 MSPC_Peak_807 Inf +chr18 20123582 20124334 MSPC_Peak_806 Inf +chr18 20130948 20131680 MSPC_Peak_805 Inf +chr18 20179977 20180599 MSPC_Peak_804 229.142 +chr18 20184335 20184883 MSPC_Peak_803 Inf +chr18 20189610 20190077 MSPC_Peak_802 121.543 +chr18 20193093 20193955 MSPC_Peak_801 Inf +chr18 20203822 20204572 MSPC_Peak_800 Inf +chr18 20358955 20359569 MSPC_Peak_799 249.324 +chr18 20426951 20427719 MSPC_Peak_798 Inf +chr18 20450567 20451237 MSPC_Peak_797 272.038 +chr18 20451438 20452375 MSPC_Peak_796 Inf +chr18 20453103 20453805 MSPC_Peak_795 Inf +chr18 20493485 20494321 MSPC_Peak_794 Inf +chr18 20543814 20544440 MSPC_Peak_793 Inf +chr18 20645176 20645670 MSPC_Peak_792 Inf +chr18 20679369 20680458 MSPC_Peak_791 Inf +chr18 20681696 20682306 MSPC_Peak_790 Inf +chr18 20686352 20686942 MSPC_Peak_789 233.514 +chr18 20695423 20696105 MSPC_Peak_788 Inf +chr18 20713714 20714934 MSPC_Peak_787 Inf +chr18 20795071 20795776 MSPC_Peak_786 Inf +chr18 20837396 20838511 MSPC_Peak_785 Inf +chr18 20839266 20841089 MSPC_Peak_784 Inf +chr18 20853418 20854033 MSPC_Peak_783 Inf +chr18 20861428 20862591 MSPC_Peak_782 Inf +chr18 20911004 20911774 MSPC_Peak_781 Inf +chr18 20957610 20958210 MSPC_Peak_780 Inf +chr18 20965046 20965574 MSPC_Peak_779 162.369 +chr18 20981209 20982169 MSPC_Peak_778 Inf +chr18 20985426 20986680 MSPC_Peak_777 226.864 +chr18 21002597 21003363 MSPC_Peak_776 Inf +chr18 21022260 21023348 MSPC_Peak_775 Inf +chr18 21032604 21033485 MSPC_Peak_774 Inf +chr18 21074852 21075438 MSPC_Peak_773 Inf +chr18 21087776 21088350 MSPC_Peak_772 236.398 +chr18 21119930 21120445 MSPC_Peak_771 180.843 +chr18 21165194 21166000 MSPC_Peak_770 274.402 +chr18 21183997 21184517 MSPC_Peak_769 Inf +chr18 21185713 21186309 MSPC_Peak_768 Inf +chr18 21198715 21199549 MSPC_Peak_767 217.464 +chr18 21206563 21207980 MSPC_Peak_766 Inf +chr18 21209138 21210104 MSPC_Peak_765 Inf +chr18 21264337 21265282 MSPC_Peak_764 Inf +chr18 21273623 21274372 MSPC_Peak_763 Inf +chr18 21302025 21303169 MSPC_Peak_762 Inf +chr18 21432033 21432777 MSPC_Peak_761 Inf +chr18 21452393 21453357 MSPC_Peak_760 Inf +chr18 21512137 21512847 MSPC_Peak_759 170.089 +chr18 21572267 21572902 MSPC_Peak_758 Inf +chr18 21576216 21576820 MSPC_Peak_757 309.738 +chr18 21578724 21579360 MSPC_Peak_756 Inf +chr18 21630941 21631989 MSPC_Peak_755 Inf +chr18 21650989 21651438 MSPC_Peak_754 186.42 +chr18 21688422 21689125 MSPC_Peak_753 Inf +chr18 21734474 21735179 MSPC_Peak_752 Inf +chr18 21794674 21796314 MSPC_Peak_751 Inf +chr18 21799385 21800072 MSPC_Peak_750 294.621 +chr18 21811440 21812109 MSPC_Peak_749 236.877 +chr18 21833413 21834587 MSPC_Peak_748 Inf +chr18 21847213 21847819 MSPC_Peak_747 Inf +chr18 21849001 21849999 MSPC_Peak_746 239.093 +chr18 21856640 21857384 MSPC_Peak_745 Inf +chr18 21897156 21897748 MSPC_Peak_744 235.801 +chr18 21912950 21913571 MSPC_Peak_743 Inf +chr18 21919290 21919861 MSPC_Peak_742 Inf +chr18 21936096 21936653 MSPC_Peak_741 Inf +chr18 21942712 21943259 MSPC_Peak_740 263.646 +chr18 22049731 22050462 MSPC_Peak_739 286.934 +chr18 22082582 22083102 MSPC_Peak_738 219.861 +chr18 22126654 22127317 MSPC_Peak_737 Inf +chr18 22285109 22285710 MSPC_Peak_736 281.321 +chr18 22470994 22471400 MSPC_Peak_735 102.356 +chr18 22500551 22501069 MSPC_Peak_734 Inf +chr18 22502937 22503660 MSPC_Peak_733 Inf +chr18 22619868 22620345 MSPC_Peak_732 256.918 +chr18 22622482 22623214 MSPC_Peak_731 Inf +chr18 22656893 22657509 MSPC_Peak_730 243.175 +chr18 22668877 22670628 MSPC_Peak_729 Inf +chr18 22748363 22749185 MSPC_Peak_728 Inf +chr18 22882330 22882812 MSPC_Peak_727 166.598 +chr18 23232491 23232971 MSPC_Peak_726 205.928 +chr18 23291876 23292394 MSPC_Peak_725 Inf +chr18 23407811 23408458 MSPC_Peak_724 278.608 +chr18 23655415 23655869 MSPC_Peak_723 164.593 +chr18 23965666 23966539 MSPC_Peak_722 Inf +chr18 24070069 24070847 MSPC_Peak_721 Inf +chr18 24125257 24125667 MSPC_Peak_720 Inf +chr18 24154722 24156346 MSPC_Peak_719 Inf +chr18 24196779 24197616 MSPC_Peak_718 Inf +chr18 24265364 24265993 MSPC_Peak_717 Inf +chr18 24279603 24280380 MSPC_Peak_716 Inf +chr18 24320917 24322213 MSPC_Peak_715 294.314 +chr18 24322508 24323195 MSPC_Peak_714 Inf +chr18 24324986 24325884 MSPC_Peak_713 Inf +chr18 24326333 24327550 MSPC_Peak_712 Inf +chr18 24343768 24344266 MSPC_Peak_711 129.426 +chr18 24344342 24345161 MSPC_Peak_710 Inf +chr18 24351528 24352092 MSPC_Peak_709 Inf +chr18 24352468 24353249 MSPC_Peak_708 Inf +chr18 24499514 24500073 MSPC_Peak_707 125.868 +chr18 24500381 24501075 MSPC_Peak_706 Inf +chr18 24777915 24778524 MSPC_Peak_705 Inf +chr18 24991770 24992431 MSPC_Peak_704 Inf +chr18 25369351 25369895 MSPC_Peak_703 166.878 +chr18 25427058 25427913 MSPC_Peak_702 Inf +chr18 25439869 25440455 MSPC_Peak_701 Inf +chr18 25442232 25442661 MSPC_Peak_700 296.391 +chr18 25450770 25451435 MSPC_Peak_699 Inf +chr18 25479678 25480548 MSPC_Peak_698 Inf +chr18 25481724 25482186 MSPC_Peak_697 167.267 +chr18 25544728 25545216 MSPC_Peak_696 168.912 +chr18 25589529 25590084 MSPC_Peak_695 Inf +chr18 26037530 26038152 MSPC_Peak_694 Inf +chr18 26236911 26237540 MSPC_Peak_693 Inf +chr18 26237956 26238583 MSPC_Peak_692 Inf +chr18 26258147 26258689 MSPC_Peak_691 Inf +chr18 26582546 26583756 MSPC_Peak_690 Inf +chr18 26583906 26584533 MSPC_Peak_689 Inf +chr18 26736970 26737467 MSPC_Peak_688 Inf +chr18 26737980 26738578 MSPC_Peak_687 263.112 +chr18 26860847 26861631 MSPC_Peak_686 Inf +chr18 27102967 27103347 MSPC_Peak_685 130.572 +chr18 28030745 28031408 MSPC_Peak_684 Inf +chr18 28682209 28682663 MSPC_Peak_683 153.025 +chr18 28702571 28703336 MSPC_Peak_682 Inf +chr18 28709496 28710132 MSPC_Peak_681 Inf +chr18 28737083 28737814 MSPC_Peak_680 Inf +chr18 28765497 28766155 MSPC_Peak_679 179.596 +chr18 28770945 28771388 MSPC_Peak_678 175.173 +chr18 28775027 28775548 MSPC_Peak_677 150.871 +chr18 28778944 28779947 MSPC_Peak_676 Inf +chr18 28784608 28785269 MSPC_Peak_675 308.564 +chr18 28805638 28806117 MSPC_Peak_674 163.756 +chr18 28821608 28822568 MSPC_Peak_673 Inf +chr18 28854119 28854611 MSPC_Peak_672 125.091 +chr18 28854843 28855433 MSPC_Peak_671 242.577 +chr18 28876657 28877847 MSPC_Peak_670 Inf +chr18 28879413 28880677 MSPC_Peak_669 Inf +chr18 28882874 28883376 MSPC_Peak_668 Inf +chr18 28901571 28902223 MSPC_Peak_667 Inf +chr18 28938584 28939284 MSPC_Peak_666 310.801 +chr18 28949312 28950073 MSPC_Peak_665 Inf +chr18 28953532 28954158 MSPC_Peak_664 222.162 +chr18 28958623 28959320 MSPC_Peak_663 Inf +chr18 28972561 28973006 MSPC_Peak_662 111.101 +chr18 28981812 28982514 MSPC_Peak_661 Inf +chr18 29007236 29007973 MSPC_Peak_660 Inf +chr18 29008060 29008748 MSPC_Peak_659 Inf +chr18 29070282 29070769 MSPC_Peak_658 184.315 +chr18 29171432 29172074 MSPC_Peak_657 Inf +chr18 29205028 29205857 MSPC_Peak_656 Inf +chr18 29228774 29229310 MSPC_Peak_655 138.756 +chr18 29237591 29238258 MSPC_Peak_654 Inf +chr18 29351704 29352354 MSPC_Peak_653 Inf +chr18 29371229 29372195 MSPC_Peak_652 Inf +chr18 29373739 29374318 MSPC_Peak_651 Inf +chr18 29629842 29630264 MSPC_Peak_650 105.144 +chr18 29747819 29748490 MSPC_Peak_649 Inf +chr18 29870721 29871116 MSPC_Peak_648 197.984 +chr18 29925367 29925959 MSPC_Peak_647 Inf +chr18 29942337 29943004 MSPC_Peak_646 273.325 +chr18 29951763 29953340 MSPC_Peak_645 Inf +chr18 29953839 29954464 MSPC_Peak_644 246.015 +chr18 29962897 29963556 MSPC_Peak_643 172.324 +chr18 29973322 29973669 MSPC_Peak_642 124.802 +chr18 30018107 30018607 MSPC_Peak_641 129.735 +chr18 30075867 30076325 MSPC_Peak_640 237.726 +chr18 30172140 30172874 MSPC_Peak_639 Inf +chr18 30192057 30193207 MSPC_Peak_638 Inf +chr18 30193229 30193817 MSPC_Peak_637 245.911 +chr18 30199091 30199777 MSPC_Peak_636 303.426 +chr18 30203912 30204810 MSPC_Peak_635 Inf +chr18 30214002 30214882 MSPC_Peak_634 Inf +chr18 30215061 30215792 MSPC_Peak_633 Inf +chr18 30278203 30278776 MSPC_Peak_632 Inf +chr18 30295522 30295954 MSPC_Peak_631 286.106 +chr18 30349544 30350395 MSPC_Peak_630 Inf +chr18 30500854 30501250 MSPC_Peak_629 173.102 +chr18 31286641 31287220 MSPC_Peak_628 264.75 +chr18 31802160 31802744 MSPC_Peak_627 Inf +chr18 31944681 31945219 MSPC_Peak_626 219.47 +chr18 31977491 31978026 MSPC_Peak_625 193.105 +chr18 32072445 32073540 MSPC_Peak_624 Inf +chr18 32091369 32092193 MSPC_Peak_623 258.839 +chr18 32094051 32094722 MSPC_Peak_622 Inf +chr18 32175627 32176346 MSPC_Peak_621 Inf +chr18 32211378 32212007 MSPC_Peak_620 Inf +chr18 32279125 32279727 MSPC_Peak_619 Inf +chr18 32287295 32288484 MSPC_Peak_618 304.367 +chr18 32288925 32289697 MSPC_Peak_617 Inf +chr18 32306119 32306975 MSPC_Peak_616 Inf +chr18 32345138 32346062 MSPC_Peak_615 Inf +chr18 32401589 32402278 MSPC_Peak_614 Inf +chr18 32407882 32408591 MSPC_Peak_613 234.372 +chr18 32417545 32418239 MSPC_Peak_612 180.035 +chr18 32491680 32492684 MSPC_Peak_611 Inf +chr18 32501475 32502232 MSPC_Peak_610 214.223 +chr18 32502574 32503095 MSPC_Peak_609 240.405 +chr18 32509078 32509800 MSPC_Peak_608 Inf +chr18 32545006 32545682 MSPC_Peak_607 Inf +chr18 32558986 32559665 MSPC_Peak_606 299.786 +chr18 32570271 32571014 MSPC_Peak_605 Inf +chr18 32870038 32870587 MSPC_Peak_604 221.217 +chr18 32923645 32924279 MSPC_Peak_603 244.823 +chr18 32925059 32926135 MSPC_Peak_602 Inf +chr18 33021733 33022324 MSPC_Peak_601 Inf +chr18 33037885 33039484 MSPC_Peak_600 Inf +chr18 33087434 33088300 MSPC_Peak_599 Inf +chr18 33095610 33096342 MSPC_Peak_598 234.047 +chr18 33194805 33195541 MSPC_Peak_597 Inf +chr18 33260010 33260719 MSPC_Peak_596 Inf +chr18 33268540 33269280 MSPC_Peak_595 Inf +chr18 33282979 33283823 MSPC_Peak_594 Inf +chr18 33409148 33409895 MSPC_Peak_593 Inf +chr18 33415048 33416015 MSPC_Peak_592 Inf +chr18 33429126 33429666 MSPC_Peak_591 Inf +chr18 33433915 33434593 MSPC_Peak_590 Inf +chr18 33453924 33454662 MSPC_Peak_589 Inf +chr18 33509370 33510068 MSPC_Peak_588 Inf +chr18 33514063 33514430 MSPC_Peak_587 Inf +chr18 33516712 33517443 MSPC_Peak_586 Inf +chr18 33517823 33518670 MSPC_Peak_585 Inf +chr18 33522586 33523184 MSPC_Peak_584 Inf +chr18 33547801 33548542 MSPC_Peak_583 Inf +chr18 33672455 33672894 MSPC_Peak_582 222.045 +chr18 33674271 33674807 MSPC_Peak_581 132.157 +chr18 33676729 33677748 MSPC_Peak_580 Inf +chr18 33678801 33679980 MSPC_Peak_579 Inf +chr18 33689041 33689680 MSPC_Peak_578 Inf +chr18 33694010 33694875 MSPC_Peak_577 Inf +chr18 33699974 33700864 MSPC_Peak_576 Inf +chr18 33889229 33890109 MSPC_Peak_575 256.898 +chr18 33928762 33929397 MSPC_Peak_574 268.331 +chr18 34007257 34007835 MSPC_Peak_573 257.506 +chr18 34045598 34046391 MSPC_Peak_572 Inf +chr18 34062557 34063264 MSPC_Peak_571 Inf +chr18 34155359 34156213 MSPC_Peak_570 308.631 +chr18 34160437 34161610 MSPC_Peak_569 Inf +chr18 34252175 34252703 MSPC_Peak_568 273.704 +chr18 34326492 34327118 MSPC_Peak_567 Inf +chr18 34493689 34494187 MSPC_Peak_566 209.151 +chr18 34597692 34598329 MSPC_Peak_565 Inf +chr18 34599130 34599725 MSPC_Peak_564 307.874 +chr18 34784017 34784564 MSPC_Peak_563 Inf +chr18 34889689 34890149 MSPC_Peak_562 272.747 +chr18 34971415 34971743 MSPC_Peak_561 202.006 +chr18 34989529 34990246 MSPC_Peak_560 228.896 +chr18 35258768 35259463 MSPC_Peak_559 Inf +chr18 35881499 35882131 MSPC_Peak_558 204.53 +chr18 35984293 35984790 MSPC_Peak_557 Inf +chr18 36513827 36514377 MSPC_Peak_556 135.497 +chr18 36518464 36519130 MSPC_Peak_555 Inf +chr18 36520433 36520775 MSPC_Peak_554 144.21 +chr18 36986780 36987380 MSPC_Peak_553 Inf +chr18 37015934 37016546 MSPC_Peak_552 162.669 +chr18 37102953 37103883 MSPC_Peak_551 Inf +chr18 37111607 37112479 MSPC_Peak_550 Inf +chr18 37144707 37145238 MSPC_Peak_549 292.148 +chr18 37200018 37200779 MSPC_Peak_548 Inf +chr18 37216311 37216813 MSPC_Peak_547 162.399 +chr18 38390356 38390765 MSPC_Peak_546 144.26 +chr18 38448144 38448565 MSPC_Peak_545 297.699 +chr18 39331052 39331599 MSPC_Peak_544 Inf +chr18 39407920 39408634 MSPC_Peak_543 289.845 +chr18 39409576 39410028 MSPC_Peak_542 223.462 +chr18 39463026 39463683 MSPC_Peak_541 Inf +chr18 41299349 41299762 MSPC_Peak_540 139.883 +chr18 41362117 41363106 MSPC_Peak_539 Inf +chr18 41363430 41364009 MSPC_Peak_538 Inf +chr18 41368865 41370163 MSPC_Peak_537 Inf +chr18 41400203 41400910 MSPC_Peak_536 239.926 +chr18 41455436 41455927 MSPC_Peak_535 140.052 +chr18 41456195 41457524 MSPC_Peak_534 Inf +chr18 41544486 41545161 MSPC_Peak_533 Inf +chr18 41585071 41585449 MSPC_Peak_532 166.878 +chr18 41646279 41647236 MSPC_Peak_531 Inf +chr18 41670144 41670766 MSPC_Peak_530 147.46 +chr18 41854751 41855175 MSPC_Peak_529 Inf +chr18 42053660 42054253 MSPC_Peak_528 Inf +chr18 42075175 42075524 MSPC_Peak_527 121.912 +chr18 42116668 42117187 MSPC_Peak_526 205.439 +chr18 42203897 42204543 MSPC_Peak_525 Inf +chr18 42277009 42277535 MSPC_Peak_524 115.933 +chr18 42286506 42286966 MSPC_Peak_523 204.98 +chr18 42309385 42310286 MSPC_Peak_522 Inf +chr18 42311526 42312366 MSPC_Peak_521 Inf +chr18 42313070 42313738 MSPC_Peak_520 Inf +chr18 42319012 42319682 MSPC_Peak_519 199.541 +chr18 42320846 42321614 MSPC_Peak_518 Inf +chr18 42322425 42323102 MSPC_Peak_517 Inf +chr18 42328038 42328972 MSPC_Peak_516 125.559 +chr18 42341689 42342337 MSPC_Peak_515 Inf +chr18 42351610 42352749 MSPC_Peak_514 Inf +chr18 42358474 42359183 MSPC_Peak_513 Inf +chr18 42369493 42370164 MSPC_Peak_512 Inf +chr18 42378488 42379055 MSPC_Peak_511 Inf +chr18 42411410 42412271 MSPC_Peak_510 Inf +chr18 42419532 42420368 MSPC_Peak_509 234.376 +chr18 42496099 42496923 MSPC_Peak_508 Inf +chr18 42497607 42498456 MSPC_Peak_507 Inf +chr18 42503866 42504506 MSPC_Peak_506 Inf +chr18 42506850 42507474 MSPC_Peak_505 Inf +chr18 42523136 42523875 MSPC_Peak_504 Inf +chr18 42526429 42527078 MSPC_Peak_503 Inf +chr18 42549307 42549918 MSPC_Peak_502 138.138 +chr18 42589290 42590021 MSPC_Peak_501 Inf +chr18 42590895 42591833 MSPC_Peak_500 Inf +chr18 42596328 42596986 MSPC_Peak_499 250.743 +chr18 42746057 42747537 MSPC_Peak_498 Inf +chr18 42921941 42922634 MSPC_Peak_497 Inf +chr18 42938755 42940132 MSPC_Peak_496 Inf +chr18 42963140 42963520 MSPC_Peak_495 116.64 +chr18 42995017 42995736 MSPC_Peak_494 Inf +chr18 43006678 43007391 MSPC_Peak_493 Inf +chr18 43128487 43129164 MSPC_Peak_492 Inf +chr18 43145451 43146115 MSPC_Peak_491 Inf +chr18 43208733 43209364 MSPC_Peak_490 Inf +chr18 43246323 43247019 MSPC_Peak_489 Inf +chr18 43293145 43293581 MSPC_Peak_488 232.623 +chr18 43307814 43308604 MSPC_Peak_487 Inf +chr18 43318378 43319023 MSPC_Peak_486 147.131 +chr18 43362661 43363491 MSPC_Peak_485 159.058 +chr18 43366828 43367666 MSPC_Peak_484 Inf +chr18 43372832 43374043 MSPC_Peak_483 Inf +chr18 43382270 43383743 MSPC_Peak_482 Inf +chr18 43409106 43409720 MSPC_Peak_481 199.91 +chr18 43418347 43419168 MSPC_Peak_480 Inf +chr18 43438156 43439312 MSPC_Peak_479 Inf +chr18 43457230 43457851 MSPC_Peak_478 Inf +chr18 43619996 43620799 MSPC_Peak_477 Inf +chr18 43631751 43632557 MSPC_Peak_476 Inf +chr18 43642650 43643172 MSPC_Peak_475 Inf +chr18 43648757 43649208 MSPC_Peak_474 110.503 +chr18 43693430 43694608 MSPC_Peak_473 Inf +chr18 43732495 43733367 MSPC_Peak_472 Inf +chr18 43751270 43751770 MSPC_Peak_471 Inf +chr18 43779457 43780406 MSPC_Peak_470 Inf +chr18 43830319 43830916 MSPC_Peak_469 294.402 +chr18 43853567 43854441 MSPC_Peak_468 Inf +chr18 43933123 43933480 MSPC_Peak_467 Inf +chr18 43954908 43955359 MSPC_Peak_466 112.526 +chr18 43978690 43979112 MSPC_Peak_465 270.121 +chr18 44014443 44015046 MSPC_Peak_464 Inf +chr18 44048287 44048887 MSPC_Peak_463 Inf +chr18 44049242 44050067 MSPC_Peak_462 Inf +chr18 44257616 44258106 MSPC_Peak_461 Inf +chr18 44286803 44287425 MSPC_Peak_460 Inf +chr18 44401893 44402529 MSPC_Peak_459 135.088 +chr18 44939602 44940068 MSPC_Peak_458 281.131 +chr18 45048735 45049381 MSPC_Peak_457 232.236 +chr18 45194383 45194781 MSPC_Peak_456 137.69 +chr18 45529264 45529859 MSPC_Peak_455 283.47 +chr18 45549672 45550595 MSPC_Peak_454 Inf +chr18 45554831 45555550 MSPC_Peak_453 223.243 +chr18 45576316 45577128 MSPC_Peak_452 Inf +chr18 45591504 45592227 MSPC_Peak_451 Inf +chr18 45633576 45634250 MSPC_Peak_450 Inf +chr18 45650109 45650921 MSPC_Peak_449 Inf +chr18 45652877 45653677 MSPC_Peak_448 Inf +chr18 45659944 45660690 MSPC_Peak_447 Inf +chr18 45666332 45666982 MSPC_Peak_446 210.259 +chr18 45669082 45669747 MSPC_Peak_445 220.528 +chr18 45678733 45679443 MSPC_Peak_444 Inf +chr18 45834281 45835055 MSPC_Peak_443 Inf +chr18 45857019 45857670 MSPC_Peak_442 Inf +chr18 45915059 45915735 MSPC_Peak_441 Inf +chr18 45979421 45981109 MSPC_Peak_440 Inf +chr18 46074333 46075081 MSPC_Peak_439 Inf +chr18 46121088 46121699 MSPC_Peak_438 Inf +chr18 46169474 46170261 MSPC_Peak_437 Inf +chr18 46282814 46283303 MSPC_Peak_436 Inf +chr18 46330496 46330957 MSPC_Peak_435 Inf +chr18 46375059 46375585 MSPC_Peak_434 147.251 +chr18 46422770 46423732 MSPC_Peak_433 Inf +chr18 46463518 46464312 MSPC_Peak_432 Inf +chr18 46472420 46473100 MSPC_Peak_431 119.52 +chr18 46474570 46475288 MSPC_Peak_430 Inf +chr18 46499959 46500478 MSPC_Peak_429 142.016 +chr18 46500718 46501548 MSPC_Peak_428 Inf +chr18 46509106 46509889 MSPC_Peak_427 Inf +chr18 46510166 46510769 MSPC_Peak_426 Inf +chr18 46515372 46515976 MSPC_Peak_425 Inf +chr18 46516869 46518796 MSPC_Peak_424 Inf +chr18 46519069 46519817 MSPC_Peak_423 Inf +chr18 46520232 46520948 MSPC_Peak_422 Inf +chr18 46523094 46524124 MSPC_Peak_421 Inf +chr18 46543348 46544052 MSPC_Peak_420 Inf +chr18 46547709 46548619 MSPC_Peak_419 Inf +chr18 46739131 46739620 MSPC_Peak_418 126.257 +chr18 46839102 46839682 MSPC_Peak_417 Inf +chr18 46860575 46860963 MSPC_Peak_416 171.785 +chr18 46995131 46995690 MSPC_Peak_415 Inf +chr18 47151513 47152129 MSPC_Peak_414 276.007 +chr18 47182368 47183006 MSPC_Peak_413 Inf +chr18 47211725 47212291 MSPC_Peak_412 191.229 +chr18 47249911 47250776 MSPC_Peak_411 Inf +chr18 47257056 47257818 MSPC_Peak_410 Inf +chr18 47344205 47345063 MSPC_Peak_409 Inf +chr18 47361203 47361799 MSPC_Peak_408 Inf +chr18 47407073 47407581 MSPC_Peak_407 107.007 +chr18 47437580 47438240 MSPC_Peak_406 175.945 +chr18 47538242 47538894 MSPC_Peak_405 Inf +chr18 47548311 47548816 MSPC_Peak_404 Inf +chr18 47574673 47575073 MSPC_Peak_403 161.162 +chr18 47637376 47638312 MSPC_Peak_402 Inf +chr18 47685152 47685986 MSPC_Peak_401 Inf +chr18 47688748 47689754 MSPC_Peak_400 Inf +chr18 47692234 47692886 MSPC_Peak_399 134.141 +chr18 47709750 47710313 MSPC_Peak_398 127.233 +chr18 47900883 47901597 MSPC_Peak_397 Inf +chr18 48137552 48138563 MSPC_Peak_396 Inf +chr18 48381170 48381578 MSPC_Peak_395 Inf +chr18 48496396 48497145 MSPC_Peak_394 Inf +chr18 48532760 48533345 MSPC_Peak_393 Inf +chr18 48533368 48533870 MSPC_Peak_392 Inf +chr18 48737899 48738301 MSPC_Peak_391 Inf +chr18 48738954 48739398 MSPC_Peak_390 271.561 +chr18 48782031 48782544 MSPC_Peak_389 Inf +chr18 49017672 49018668 MSPC_Peak_388 Inf +chr18 49057949 49058273 MSPC_Peak_387 173.68 +chr18 49140381 49140937 MSPC_Peak_386 Inf +chr18 49965663 49966302 MSPC_Peak_385 Inf +chr18 50269617 50270167 MSPC_Peak_384 215.698 +chr18 51183482 51184213 MSPC_Peak_383 Inf +chr18 51489705 51490291 MSPC_Peak_382 Inf +chr18 51687584 51687957 MSPC_Peak_381 201.786 +chr18 51692862 51693582 MSPC_Peak_380 Inf +chr18 51717633 51718279 MSPC_Peak_379 211.255 +chr18 51735755 51736404 MSPC_Peak_378 Inf +chr18 51749839 51750552 MSPC_Peak_377 301.094 +chr18 51762037 51762730 MSPC_Peak_376 Inf +chr18 51773219 51773946 MSPC_Peak_375 Inf +chr18 51778353 51779033 MSPC_Peak_374 Inf +chr18 51780676 51781548 MSPC_Peak_373 Inf +chr18 51783441 51784089 MSPC_Peak_372 267.745 +chr18 51786930 51787844 MSPC_Peak_371 Inf +chr18 51842433 51843041 MSPC_Peak_370 239.787 +chr18 52018584 52019179 MSPC_Peak_369 Inf +chr18 52028126 52028695 MSPC_Peak_368 216.007 +chr18 52028849 52029362 MSPC_Peak_367 Inf +chr18 52222119 52222519 MSPC_Peak_366 228.453 +chr18 52279237 52280071 MSPC_Peak_365 Inf +chr18 52284193 52284922 MSPC_Peak_364 Inf +chr18 52339386 52340481 MSPC_Peak_363 Inf +chr18 52352978 52353387 MSPC_Peak_362 200.549 +chr18 52363591 52364341 MSPC_Peak_361 Inf +chr18 52404014 52404852 MSPC_Peak_360 Inf +chr18 52432776 52433434 MSPC_Peak_359 250.121 +chr18 52433682 52435245 MSPC_Peak_358 Inf +chr18 52436437 52437305 MSPC_Peak_357 Inf +chr18 52490276 52490951 MSPC_Peak_356 197.555 +chr18 52497010 52497627 MSPC_Peak_355 272.378 +chr18 52498003 52499071 MSPC_Peak_354 236.06 +chr18 52507449 52508069 MSPC_Peak_353 Inf +chr18 52589270 52589873 MSPC_Peak_352 Inf +chr18 52609638 52610229 MSPC_Peak_351 Inf +chr18 52625712 52626505 MSPC_Peak_350 Inf +chr18 52755147 52756037 MSPC_Peak_349 Inf +chr18 52757730 52758113 MSPC_Peak_348 282.557 +chr18 52774415 52774888 MSPC_Peak_347 112.087 +chr18 53054602 53055280 MSPC_Peak_346 Inf +chr18 53173168 53173774 MSPC_Peak_345 Inf +chr18 53404347 53404883 MSPC_Peak_344 Inf +chr18 53404924 53405602 MSPC_Peak_343 Inf +chr18 53405607 53406188 MSPC_Peak_342 158.47 +chr18 53417097 53417651 MSPC_Peak_341 110.872 +chr18 53419384 53420110 MSPC_Peak_340 Inf +chr18 53420735 53421381 MSPC_Peak_339 Inf +chr18 53523327 53523888 MSPC_Peak_338 249.126 +chr18 53577537 53578090 MSPC_Peak_337 172.743 +chr18 53888885 53889368 MSPC_Peak_336 242.457 +chr18 53912813 53913526 MSPC_Peak_335 Inf +chr18 53938763 53939436 MSPC_Peak_334 Inf +chr18 53939945 53940406 MSPC_Peak_333 209.63 +chr18 53965955 53966721 MSPC_Peak_332 Inf +chr18 53982745 53983396 MSPC_Peak_331 Inf +chr18 54015617 54016101 MSPC_Peak_330 173.132 +chr18 54032307 54032613 MSPC_Peak_329 140.78 +chr18 54199375 54199877 MSPC_Peak_328 116.66 +chr18 54238168 54238681 MSPC_Peak_327 242.607 +chr18 54483027 54483671 MSPC_Peak_326 Inf +chr18 54623503 54624216 MSPC_Peak_325 Inf +chr18 54795462 54796040 MSPC_Peak_324 255.553 +chr18 54808532 54809476 MSPC_Peak_323 Inf +chr18 54875137 54875876 MSPC_Peak_322 Inf +chr18 54877579 54878567 MSPC_Peak_321 Inf +chr18 54909265 54910151 MSPC_Peak_320 Inf +chr18 54910900 54911589 MSPC_Peak_319 Inf +chr18 55111306 55111991 MSPC_Peak_318 253.009 +chr18 55112737 55113508 MSPC_Peak_317 292.796 +chr18 55186842 55187535 MSPC_Peak_316 Inf +chr18 55248502 55249464 MSPC_Peak_315 Inf +chr18 55250879 55251474 MSPC_Peak_314 Inf +chr18 55302093 55302767 MSPC_Peak_313 Inf +chr18 55333011 55333669 MSPC_Peak_312 Inf +chr18 55365720 55366619 MSPC_Peak_311 Inf +chr18 55372481 55373016 MSPC_Peak_310 157.004 +chr18 55373191 55374003 MSPC_Peak_309 Inf +chr18 55376446 55376947 MSPC_Peak_308 Inf +chr18 55379317 55380373 MSPC_Peak_307 Inf +chr18 55382845 55383453 MSPC_Peak_306 Inf +chr18 55395338 55396004 MSPC_Peak_305 Inf +chr18 55396182 55396839 MSPC_Peak_304 Inf +chr18 55399993 55400662 MSPC_Peak_303 Inf +chr18 55412901 55413926 MSPC_Peak_302 Inf +chr18 55414645 55416526 MSPC_Peak_301 Inf +chr18 55438668 55439274 MSPC_Peak_300 Inf +chr18 55439334 55440156 MSPC_Peak_299 Inf +chr18 55445690 55446254 MSPC_Peak_298 284.8 +chr18 55460569 55462142 MSPC_Peak_297 Inf +chr18 55464062 55464959 MSPC_Peak_296 Inf +chr18 55465927 55466631 MSPC_Peak_295 242.937 +chr18 55470271 55470881 MSPC_Peak_294 Inf +chr18 55568926 55569787 MSPC_Peak_293 Inf +chr18 55680548 55681475 MSPC_Peak_292 Inf +chr18 55684433 55684899 MSPC_Peak_291 133.373 +chr18 55687517 55688482 MSPC_Peak_290 Inf +chr18 55688673 55689184 MSPC_Peak_289 220.089 +chr18 55744462 55745107 MSPC_Peak_288 294.172 +chr18 55747687 55748235 MSPC_Peak_287 Inf +chr18 55754997 55756401 MSPC_Peak_286 Inf +chr18 55758182 55758883 MSPC_Peak_285 292.627 +chr18 55850369 55851081 MSPC_Peak_284 Inf +chr18 55878891 55879512 MSPC_Peak_283 201.627 +chr18 55890684 55891833 MSPC_Peak_282 Inf +chr18 55901737 55902275 MSPC_Peak_281 231.467 +chr18 55930050 55930824 MSPC_Peak_280 295.618 +chr18 55937096 55937624 MSPC_Peak_279 Inf +chr18 55982263 55982734 MSPC_Peak_278 255.285 +chr18 56072694 56073160 MSPC_Peak_277 Inf +chr18 56216956 56217727 MSPC_Peak_276 Inf +chr18 56219282 56219918 MSPC_Peak_275 Inf +chr18 56452360 56453257 MSPC_Peak_274 Inf +chr18 56456193 56457052 MSPC_Peak_273 Inf +chr18 56517536 56518099 MSPC_Peak_272 Inf +chr18 56529481 56529964 MSPC_Peak_271 227.615 +chr18 56609626 56610367 MSPC_Peak_270 Inf +chr18 56625739 56626356 MSPC_Peak_269 Inf +chr18 56680567 56681199 MSPC_Peak_268 126.904 +chr18 56720413 56721068 MSPC_Peak_267 Inf +chr18 56721900 56722718 MSPC_Peak_266 Inf +chr18 56806720 56807335 MSPC_Peak_265 228.233 +chr18 56812206 56812961 MSPC_Peak_264 Inf +chr18 57004855 57005392 MSPC_Peak_263 246.021 +chr18 57126857 57127519 MSPC_Peak_262 Inf +chr18 57273300 57274136 MSPC_Peak_261 Inf +chr18 57348702 57349295 MSPC_Peak_260 Inf +chr18 57385254 57385934 MSPC_Peak_259 Inf +chr18 57455567 57456385 MSPC_Peak_258 Inf +chr18 57514262 57514875 MSPC_Peak_257 Inf +chr18 57542973 57543716 MSPC_Peak_256 302.967 +chr18 57581872 57582465 MSPC_Peak_255 Inf +chr18 57583905 57584345 MSPC_Peak_254 271.349 +chr18 57585511 57586199 MSPC_Peak_253 Inf +chr18 57590354 57590862 MSPC_Peak_252 169.431 +chr18 57619977 57621060 MSPC_Peak_251 Inf +chr18 57621287 57622157 MSPC_Peak_250 Inf +chr18 57625069 57625922 MSPC_Peak_249 Inf +chr18 57634176 57634755 MSPC_Peak_248 119.759 +chr18 57647386 57648727 MSPC_Peak_247 Inf +chr18 57650613 57651615 MSPC_Peak_246 Inf +chr18 57652514 57652998 MSPC_Peak_245 161.073 +chr18 57720735 57721642 MSPC_Peak_244 Inf +chr18 58342972 58343461 MSPC_Peak_243 109.806 +chr18 58519446 58520182 MSPC_Peak_242 Inf +chr18 58559980 58560538 MSPC_Peak_241 237.296 +chr18 58822777 58823245 MSPC_Peak_240 252.61 +chr18 58952094 58952689 MSPC_Peak_239 Inf +chr18 59002163 59002869 MSPC_Peak_238 263.187 +chr18 59256389 59257018 MSPC_Peak_237 Inf +chr18 59279703 59280202 MSPC_Peak_236 168.576 +chr18 59291610 59292213 MSPC_Peak_235 250.061 +chr18 59303349 59304130 MSPC_Peak_234 144.649 +chr18 59306831 59307602 MSPC_Peak_233 Inf +chr18 59311771 59312266 MSPC_Peak_232 130.004 +chr18 59316159 59316849 MSPC_Peak_231 Inf +chr18 59317305 59317849 MSPC_Peak_230 Inf +chr18 59318197 59319589 MSPC_Peak_229 Inf +chr18 59353626 59354090 MSPC_Peak_228 Inf +chr18 59459183 59459764 MSPC_Peak_227 Inf +chr18 59466046 59466877 MSPC_Peak_226 Inf +chr18 59490728 59491333 MSPC_Peak_225 Inf +chr18 59665283 59666125 MSPC_Peak_224 Inf +chr18 59666270 59666961 MSPC_Peak_223 263.536 +chr18 59795362 59795899 MSPC_Peak_222 202.964 +chr18 59824730 59825232 MSPC_Peak_221 Inf +chr18 60024864 60025534 MSPC_Peak_220 Inf +chr18 60099441 60100240 MSPC_Peak_219 Inf +chr18 60102833 60103498 MSPC_Peak_218 Inf +chr18 60103765 60104441 MSPC_Peak_217 Inf +chr18 60152809 60154083 MSPC_Peak_216 Inf +chr18 60160108 60160503 MSPC_Peak_215 144.399 +chr18 60193419 60194024 MSPC_Peak_214 187.398 +chr18 60302052 60302724 MSPC_Peak_213 Inf +chr18 60330817 60331454 MSPC_Peak_212 290.344 +chr18 60339131 60339607 MSPC_Peak_211 163.502 +chr18 60339832 60340300 MSPC_Peak_210 254.516 +chr18 60381909 60382644 MSPC_Peak_209 260.207 +chr18 60431814 60432286 MSPC_Peak_208 301.212 +chr18 60455946 60456452 MSPC_Peak_207 140.032 +chr18 60499368 60499961 MSPC_Peak_206 Inf +chr18 60603717 60604311 MSPC_Peak_205 Inf +chr18 60646176 60646956 MSPC_Peak_204 Inf +chr18 60660267 60660860 MSPC_Peak_203 Inf +chr18 60738919 60739533 MSPC_Peak_202 137.67 +chr18 60799619 60800181 MSPC_Peak_201 280.595 +chr18 60822706 60823372 MSPC_Peak_200 Inf +chr18 60829011 60829529 MSPC_Peak_199 Inf +chr18 60892834 60893445 MSPC_Peak_198 276.156 +chr18 60905144 60905835 MSPC_Peak_197 Inf +chr18 60908359 60909348 MSPC_Peak_196 Inf +chr18 60921720 60922631 MSPC_Peak_195 Inf +chr18 60924212 60925141 MSPC_Peak_194 Inf +chr18 60925520 60926009 MSPC_Peak_193 170.239 +chr18 60926425 60928091 MSPC_Peak_192 Inf +chr18 61114410 61115019 MSPC_Peak_191 141.289 +chr18 61121597 61122337 MSPC_Peak_190 168.613 +chr18 61181814 61182631 MSPC_Peak_189 Inf +chr18 61348719 61349311 MSPC_Peak_188 125.978 +chr18 61711960 61712523 MSPC_Peak_187 Inf +chr18 61801471 61802000 MSPC_Peak_186 113.651 +chr18 62948274 62948807 MSPC_Peak_185 238.97 +chr18 63243041 63243466 MSPC_Peak_184 305.997 +chr18 63303296 63303940 MSPC_Peak_183 Inf +chr18 63304018 63304709 MSPC_Peak_182 Inf +chr18 63429661 63430242 MSPC_Peak_181 Inf +chr18 63489160 63489605 MSPC_Peak_180 Inf +chr18 63543300 63544162 MSPC_Peak_179 Inf +chr18 63573566 63574286 MSPC_Peak_178 Inf +chr18 63637403 63638057 MSPC_Peak_177 286.525 +chr18 63748423 63748923 MSPC_Peak_176 Inf +chr18 64098135 64098731 MSPC_Peak_175 Inf +chr18 64140985 64141683 MSPC_Peak_174 235.801 +chr18 64224833 64225660 MSPC_Peak_173 Inf +chr18 64227237 64227733 MSPC_Peak_172 Inf +chr18 64266354 64266896 MSPC_Peak_171 Inf +chr18 64391912 64392357 MSPC_Peak_170 134.46 +chr18 64421251 64422026 MSPC_Peak_169 Inf +chr18 64434400 64434879 MSPC_Peak_168 297.383 +chr18 64488645 64489283 MSPC_Peak_167 Inf +chr18 64490576 64491233 MSPC_Peak_166 Inf +chr18 64527966 64528502 MSPC_Peak_165 Inf +chr18 64537944 64539015 MSPC_Peak_164 Inf +chr18 64540781 64541828 MSPC_Peak_163 Inf +chr18 64542136 64542801 MSPC_Peak_162 Inf +chr18 64737134 64737737 MSPC_Peak_161 Inf +chr18 64741160 64742127 MSPC_Peak_160 Inf +chr18 64784934 64786159 MSPC_Peak_159 Inf +chr18 64798676 64799264 MSPC_Peak_158 219.781 +chr18 64800664 64801394 MSPC_Peak_157 Inf +chr18 64801526 64802191 MSPC_Peak_156 208.038 +chr18 65021328 65022027 MSPC_Peak_155 304.942 +chr18 65027161 65027893 MSPC_Peak_154 Inf +chr18 65029947 65030606 MSPC_Peak_153 Inf +chr18 65052595 65053178 MSPC_Peak_152 Inf +chr18 65053249 65053868 MSPC_Peak_151 Inf +chr18 65078114 65078834 MSPC_Peak_150 Inf +chr18 65092842 65093420 MSPC_Peak_149 Inf +chr18 65264898 65265427 MSPC_Peak_148 Inf +chr18 65270262 65270754 MSPC_Peak_147 131.17 +chr18 65983686 65984040 MSPC_Peak_146 115.893 +chr18 66123913 66124719 MSPC_Peak_145 Inf +chr18 66151358 66151860 MSPC_Peak_144 127.692 +chr18 66993186 66993838 MSPC_Peak_143 263.925 +chr18 67419886 67420661 MSPC_Peak_142 Inf +chr18 67794447 67795125 MSPC_Peak_141 Inf +chr18 67817016 67817551 MSPC_Peak_140 Inf +chr18 67872619 67873544 MSPC_Peak_139 237.137 +chr18 67899263 67900046 MSPC_Peak_138 Inf +chr18 67953467 67954068 MSPC_Peak_137 243.324 +chr18 67988801 67989316 MSPC_Peak_136 Inf +chr18 68004277 68004733 MSPC_Peak_135 125.788 +chr18 68024470 68025039 MSPC_Peak_134 226.607 +chr18 68026271 68026801 MSPC_Peak_133 268.074 +chr18 68084859 68085641 MSPC_Peak_132 Inf +chr18 68089165 68090258 MSPC_Peak_131 Inf +chr18 68092405 68093252 MSPC_Peak_130 Inf +chr18 68164016 68164593 MSPC_Peak_129 244.988 +chr18 69349638 69350386 MSPC_Peak_128 Inf +chr18 69902655 69903088 MSPC_Peak_127 186.949 +chr18 70299598 70300124 MSPC_Peak_126 110.384 +chr18 70507344 70507785 MSPC_Peak_125 187.687 +chr18 70592458 70593011 MSPC_Peak_124 Inf +chr18 70602872 70603450 MSPC_Peak_123 Inf +chr18 70660435 70661454 MSPC_Peak_122 Inf +chr18 70667020 70667978 MSPC_Peak_121 Inf +chr18 70727380 70728060 MSPC_Peak_120 Inf +chr18 70856213 70856599 MSPC_Peak_119 194.332 +chr18 70856683 70857578 MSPC_Peak_118 Inf +chr18 70955775 70956517 MSPC_Peak_117 Inf +chr18 70963615 70964458 MSPC_Peak_116 Inf +chr18 70985729 70986711 MSPC_Peak_115 Inf +chr18 71048773 71049569 MSPC_Peak_114 Inf +chr18 71068166 71068801 MSPC_Peak_113 254.906 +chr18 71171828 71172804 MSPC_Peak_112 Inf +chr18 71300906 71301504 MSPC_Peak_111 Inf +chr18 71374197 71374773 MSPC_Peak_110 121.852 +chr18 71423348 71424035 MSPC_Peak_109 132.875 +chr18 71426502 71427773 MSPC_Peak_108 Inf +chr18 71440070 71440797 MSPC_Peak_107 262.573 +chr18 71562709 71563420 MSPC_Peak_106 Inf +chr18 71604613 71605359 MSPC_Peak_105 Inf +chr18 71609339 71609849 MSPC_Peak_104 Inf +chr18 71613742 71614315 MSPC_Peak_103 174.518 +chr18 71815351 71816019 MSPC_Peak_102 Inf +chr18 71843440 71844023 MSPC_Peak_101 132.327 +chr18 71909707 71910510 MSPC_Peak_100 Inf +chr18 71936331 71936917 MSPC_Peak_99 156.914 +chr18 71949586 71951347 MSPC_Peak_98 Inf +chr18 71955771 71956353 MSPC_Peak_97 Inf +chr18 71983838 71984496 MSPC_Peak_96 Inf +chr18 72132905 72133498 MSPC_Peak_95 Inf +chr18 72135658 72136115 MSPC_Peak_94 200.379 +chr18 72187316 72187713 MSPC_Peak_93 173.96 +chr18 72193524 72194332 MSPC_Peak_92 Inf +chr18 72209053 72209941 MSPC_Peak_91 Inf +chr18 72213749 72214786 MSPC_Peak_90 Inf +chr18 72229139 72229978 MSPC_Peak_89 Inf +chr18 72368266 72368763 MSPC_Peak_88 Inf +chr18 72472273 72473012 MSPC_Peak_87 Inf +chr18 72546642 72547362 MSPC_Peak_86 256.23 +chr18 72573043 72573578 MSPC_Peak_85 Inf +chr18 72577859 72578640 MSPC_Peak_84 212.654 +chr18 72595644 72596149 MSPC_Peak_83 145.546 +chr18 72608230 72608808 MSPC_Peak_82 288.998 +chr18 72632207 72632783 MSPC_Peak_81 171.187 +chr18 72640883 72641521 MSPC_Peak_80 Inf +chr18 72669410 72670117 MSPC_Peak_79 Inf +chr18 72673020 72673670 MSPC_Peak_78 Inf +chr18 72748885 72749436 MSPC_Peak_77 293.265 +chr18 72895524 72896055 MSPC_Peak_76 Inf +chr18 72919057 72919613 MSPC_Peak_75 164.933 +chr18 73173868 73174665 MSPC_Peak_74 303.595 +chr18 73461664 73462164 MSPC_Peak_73 Inf +chr18 73513872 73514406 MSPC_Peak_72 Inf +chr18 73514557 73515216 MSPC_Peak_71 Inf +chr18 73535249 73536067 MSPC_Peak_70 Inf +chr18 73536237 73536732 MSPC_Peak_69 193.614 +chr18 73537237 73537941 MSPC_Peak_68 Inf +chr18 73571546 73572175 MSPC_Peak_67 Inf +chr18 73870357 73871069 MSPC_Peak_66 Inf +chr18 73944619 73945204 MSPC_Peak_65 187.585 +chr18 74033494 74034041 MSPC_Peak_64 194.402 +chr18 74035555 74036453 MSPC_Peak_63 Inf +chr18 74060191 74060937 MSPC_Peak_62 Inf +chr18 74102539 74103133 MSPC_Peak_61 Inf +chr18 74106684 74107236 MSPC_Peak_60 Inf +chr18 74122874 74123473 MSPC_Peak_59 132.745 +chr18 74123484 74124336 MSPC_Peak_58 Inf +chr18 74188979 74189578 MSPC_Peak_57 108.541 +chr18 74237063 74237622 MSPC_Peak_56 144.429 +chr18 74284992 74285806 MSPC_Peak_55 Inf +chr18 74292110 74292737 MSPC_Peak_54 Inf +chr18 74331607 74332188 MSPC_Peak_53 176.673 +chr18 74362137 74362824 MSPC_Peak_52 Inf +chr18 74368725 74369950 MSPC_Peak_51 Inf +chr18 74398521 74400244 MSPC_Peak_50 Inf +chr18 74402752 74403435 MSPC_Peak_49 264.26 +chr18 74409162 74409812 MSPC_Peak_48 Inf +chr18 74535980 74536735 MSPC_Peak_47 Inf +chr18 74550129 74550682 MSPC_Peak_46 Inf +chr18 74554808 74555521 MSPC_Peak_45 Inf +chr18 74556869 74557635 MSPC_Peak_44 Inf +chr18 74569183 74570003 MSPC_Peak_43 Inf +chr18 74662128 74662695 MSPC_Peak_42 Inf +chr18 74755099 74755936 MSPC_Peak_41 Inf +chr18 74758299 74758849 MSPC_Peak_40 249.815 +chr18 74766525 74767180 MSPC_Peak_39 Inf +chr18 74785448 74785922 MSPC_Peak_38 218.382 +chr18 74800779 74801762 MSPC_Peak_37 Inf +chr18 74805102 74805915 MSPC_Peak_36 Inf +chr18 74813207 74813783 MSPC_Peak_35 168.563 +chr18 74826788 74827705 MSPC_Peak_34 Inf +chr18 74967351 74968079 MSPC_Peak_33 Inf +chr18 74974177 74975834 MSPC_Peak_32 Inf +chr18 75388493 75388918 MSPC_Peak_31 163.147 +chr18 75388941 75389933 MSPC_Peak_30 197.296 +chr18 75404770 75405866 MSPC_Peak_29 Inf +chr18 75463843 75464493 MSPC_Peak_28 Inf +chr18 76244221 76244814 MSPC_Peak_27 Inf +chr18 76247276 76247769 MSPC_Peak_26 Inf +chr18 76355382 76355883 MSPC_Peak_25 227.482 +chr18 76382055 76382718 MSPC_Peak_24 Inf +chr18 76399054 76399742 MSPC_Peak_23 Inf +chr18 76431621 76432095 MSPC_Peak_22 Inf +chr18 76533907 76534696 MSPC_Peak_21 Inf +chr18 76566643 76567262 MSPC_Peak_20 269.232 +chr18 76574419 76575043 MSPC_Peak_19 309.768 +chr18 76652665 76653220 MSPC_Peak_18 292.996 +chr18 76653358 76654222 MSPC_Peak_17 Inf +chr18 76700587 76701117 MSPC_Peak_16 129.934 +chr18 76734601 76735212 MSPC_Peak_15 Inf +chr18 76749825 76750469 MSPC_Peak_14 174.389 +chr18 76759881 76760254 MSPC_Peak_13 186.261 +chr18 76802492 76803012 MSPC_Peak_12 123.895 +chr18 76805568 76806248 MSPC_Peak_11 154.59 +chr18 76822532 76823743 MSPC_Peak_10 Inf +chr18 77173709 77174478 MSPC_Peak_9 Inf +chr18 77271899 77272573 MSPC_Peak_8 Inf +chr18 77389797 77390191 MSPC_Peak_7 157.403 +chr18 77438923 77440019 MSPC_Peak_6 Inf +chr18 77541035 77541645 MSPC_Peak_5 Inf +chr18 77694196 77695138 MSPC_Peak_4 Inf +chr18 77725047 77725893 MSPC_Peak_3 162.728 +chr18 77968125 77968822 MSPC_Peak_2 Inf +chr18 77987486 77988208 MSPC_Peak_1 Inf diff --git a/inst/extdata/RNA-seq/ERR127302_chr14.bw b/inst/extdata/RNA-seq/ERR127302_chr14.bw new file mode 100644 index 0000000..fcacaaa Binary files /dev/null and b/inst/extdata/RNA-seq/ERR127302_chr14.bw differ diff --git a/inst/extdata/RNA-seq/ERR127303_chr14.bw b/inst/extdata/RNA-seq/ERR127303_chr14.bw new file mode 100644 index 0000000..5fec15a Binary files /dev/null and b/inst/extdata/RNA-seq/ERR127303_chr14.bw differ diff --git a/inst/extdata/RNA-seq/ERR127306_chr14.bw b/inst/extdata/RNA-seq/ERR127306_chr14.bw new file mode 100644 index 0000000..990565c Binary files /dev/null and b/inst/extdata/RNA-seq/ERR127306_chr14.bw differ diff --git a/inst/extdata/RNA-seq/ERR127307_chr14.bw b/inst/extdata/RNA-seq/ERR127307_chr14.bw new file mode 100644 index 0000000..4465011 Binary files /dev/null and b/inst/extdata/RNA-seq/ERR127307_chr14.bw differ diff --git a/inst/extdata/RNA-seq/meta_info.csv b/inst/extdata/RNA-seq/meta_info.csv new file mode 100644 index 0000000..99e92d3 --- /dev/null +++ b/inst/extdata/RNA-seq/meta_info.csv @@ -0,0 +1,5 @@ +SampleName,Type,Group +ERR127302_chr14,KO_rep1,KO +ERR127303_chr14,KO_rep2,KO +ERR127306_chr14,WT_rep1,WT +ERR127307_chr14,WT_rep2,WT diff --git a/inst/extdata/used_hg19.gtf b/inst/extdata/used_hg19.gtf new file mode 100644 index 0000000..c5c314b --- /dev/null +++ b/inst/extdata/used_hg19.gtf @@ -0,0 +1,1008 @@ +##gff-version 2 +##source-version rtracklayer 1.50.0 +##date 2022-07-17 +chr14 HAVANA gene 21677295 21737653 . - . gene_id "ENSG00000092199.13"; transcript_id "ENSG00000092199.13"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC"; level "2"; havana_gene "OTTHUMG00000170757.1"; +chr14 HAVANA transcript 21677295 21737653 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA exon 21737457 21737653 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "1"; exon_id "ENSE00002463755.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA exon 21699156 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "3"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA CDS 21699156 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "3"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA exon 21677295 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "7"; exon_id "ENSE00002523291.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA CDS 21679499 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "7"; exon_id "ENSE00002523291.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA stop_codon 21679496 21679498 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; exon_number "7"; exon_id "ENSE00002523291.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA UTR 21737457 21737653 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA UTR 21677295 21679498 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000336053.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-001"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410220.1"; protein_id "ENSP00000338095.6"; +chr14 HAVANA transcript 21677295 21737638 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21737457 21737638 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "1"; exon_id "ENSE00001136530.6"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21702112 21702410 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "2"; exon_id "ENSE00001618048.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "2"; exon_id "ENSE00001618048.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "2"; exon_id "ENSE00001618048.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21699117 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "3"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21699117 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "3"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "7"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21679565 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "7"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21677295 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "8"; exon_id "ENSE00001493950.2"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21679385 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "8"; exon_id "ENSE00001493950.2"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA stop_codon 21679382 21679384 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "8"; exon_id "ENSE00001493950.2"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21737457 21737638 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21702353 21702410 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21677295 21679384 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000320084.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-201"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; protein_id "ENSP00000319690.7"; ccdsid "CCDS41915.1" +chr14 HAVANA transcript 21677295 21737638 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21737457 21737638 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "1"; exon_id "ENSE00001136530.6"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21699156 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "3"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21699156 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "3"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "7"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679565 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "7"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21677295 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "8"; exon_id "ENSE00001493950.2"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679385 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "8"; exon_id "ENSE00001493950.2"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA stop_codon 21679382 21679384 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "8"; exon_id "ENSE00001493950.2"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21737457 21737638 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21677295 21679384 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000449098.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-202"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; protein_id "ENSP00000404559.1"; ccdsid "CCDS45079.1" +chr14 HAVANA transcript 21678693 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21737457 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "1"; exon_id "ENSE00001748127.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21731826 21731988 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "2"; exon_id "ENSE00002213720.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "3"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21699156 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "5"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21699156 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "5"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "6"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "6"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "7"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "7"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "8"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "8"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "9"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679565 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "9"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21678693 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "10"; exon_id "ENSE00002455312.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679385 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "10"; exon_id "ENSE00002455312.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA stop_codon 21679382 21679384 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; exon_number "10"; exon_id "ENSE00002455312.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21737457 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21731826 21731988 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21678693 21679384 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554969.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-017"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410222.1"; protein_id "ENSP00000450725.1"; ccdsid "CCDS45079.1" +chr14 HAVANA transcript 21678705 21737582 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA exon 21737457 21737582 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "1"; exon_id "ENSE00002268813.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA exon 21699117 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "3"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000451187.1"; +chr14 HAVANA CDS 21699117 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "3"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000451187.1"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA exon 21678705 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "7"; exon_id "ENSE00002523143.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA CDS 21679449 21679465 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "7"; exon_id "ENSE00002523143.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA stop_codon 21679446 21679448 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; exon_number "7"; exon_id "ENSE00002523143.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA UTR 21737457 21737582 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA UTR 21678705 21679448 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556142.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-020"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410223.1"; protein_id "ENSP00000451187.1"; +chr14 HAVANA transcript 21678709 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21737457 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "1"; exon_id "ENSE00001748127.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "2"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21699117 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "4"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21699117 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "4"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "5"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "5"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "6"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "6"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "7"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "7"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "8"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21679565 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "8"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21678709 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "9"; exon_id "ENSE00002455591.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21679385 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "9"; exon_id "ENSE00002455591.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA stop_codon 21679382 21679384 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; exon_number "9"; exon_id "ENSE00002455591.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21737457 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21678709 21679384 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554455.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-005"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410225.1"; protein_id "ENSP00000451291.1"; ccdsid "CCDS41915.1" +chr14 HAVANA transcript 21678715 21733675 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21730760 21733675 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "1"; exon_id "ENSE00002285687.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21699156 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "3"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21699156 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "3"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "7"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679565 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "7"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21678715 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "8"; exon_id "ENSE00002233216.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679385 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "8"; exon_id "ENSE00002233216.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA stop_codon 21679382 21679384 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; exon_number "8"; exon_id "ENSE00002233216.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21730760 21733675 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21678715 21679384 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000430246.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-015"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410226.1"; protein_id "ENSP00000442816.1"; ccdsid "CCDS45079.1" +chr14 HAVANA transcript 21678741 21737562 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA exon 21737457 21737562 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "1"; exon_id "ENSE00002501203.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "2"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA exon 21699156 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "4"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA CDS 21699156 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "4"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "5"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "5"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "6"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "6"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "7"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "7"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA exon 21678741 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "8"; exon_id "ENSE00002482764.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA CDS 21679499 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "8"; exon_id "ENSE00002482764.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA stop_codon 21679496 21679498 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; exon_number "8"; exon_id "ENSE00002482764.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA UTR 21737457 21737562 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA UTR 21678741 21679498 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553753.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-014"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410227.1"; protein_id "ENSP00000450548.1"; +chr14 HAVANA transcript 21678772 21737563 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA exon 21737457 21737563 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "1"; exon_id "ENSE00002531013.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "2"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA exon 21699156 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "4"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA CDS 21699156 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "4"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "5"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "5"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "6"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "6"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "7"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "7"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA exon 21679565 21679722 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "8"; exon_id "ENSE00002498034.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA CDS 21679565 21679722 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "8"; exon_id "ENSE00002498034.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA exon 21678772 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "9"; exon_id "ENSE00002460089.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA CDS 21679385 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "9"; exon_id "ENSE00002460089.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA stop_codon 21679382 21679384 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; exon_number "9"; exon_id "ENSE00002460089.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA UTR 21737457 21737563 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA UTR 21678772 21679384 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555914.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-011"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "appris_principal"; havana_transcript "OTTHUMT00000410228.1"; protein_id "ENSP00000451708.1"; +chr14 HAVANA transcript 21678772 21737580 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA exon 21737457 21737580 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "1"; exon_id "ENSE00002510134.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "2"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA exon 21699117 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "4"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000450790.1"; +chr14 HAVANA CDS 21699117 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "4"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000450790.1"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "5"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "5"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "6"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "6"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "7"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "7"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA exon 21679565 21679722 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "8"; exon_id "ENSE00002498034.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA CDS 21679565 21679722 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "8"; exon_id "ENSE00002498034.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA exon 21678772 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "9"; exon_id "ENSE00002460089.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA CDS 21679385 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "9"; exon_id "ENSE00002460089.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA stop_codon 21679382 21679384 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; exon_number "9"; exon_id "ENSE00002460089.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA UTR 21737457 21737580 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA UTR 21678772 21679384 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555309.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "HNRNPC-010"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410229.1"; protein_id "ENSP00000450790.1"; +chr14 HAVANA transcript 21679063 21737583 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA exon 21737457 21737583 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; exon_number "1"; exon_id "ENSE00002226823.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; exon_number "2"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA exon 21699117 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; exon_number "4"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000452599.1"; +chr14 HAVANA CDS 21699117 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; exon_number "4"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000452599.1"; +chr14 HAVANA exon 21681119 21681203 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; exon_number "5"; exon_id "ENSE00001704209.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA CDS 21681119 21681203 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; exon_number "5"; exon_id "ENSE00001704209.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; exon_number "6"; exon_id "ENSE00003538375.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA stop_codon 21680080 21680082 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; exon_number "6"; exon_id "ENSE00003538375.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; exon_number "7"; exon_id "ENSE00003656701.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA exon 21679063 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; exon_number "8"; exon_id "ENSE00001352707.6"; protein_id "ENSP00000452599.1"; +chr14 HAVANA UTR 21737457 21737583 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA UTR 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA UTR 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA UTR 21679063 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557442.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HNRNPC-008"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410230.1"; protein_id "ENSP00000452599.1"; +chr14 HAVANA transcript 21679082 21737569 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA exon 21737457 21737569 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "1"; exon_id "ENSE00002482220.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "2"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA exon 21702237 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "3"; exon_id "ENSE00002511143.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA CDS 21702237 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "3"; exon_id "ENSE00002511143.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "3"; exon_id "ENSE00002511143.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "7"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA CDS 21679565 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "7"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA exon 21679082 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "8"; exon_id "ENSE00002531308.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA CDS 21679385 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "8"; exon_id "ENSE00002531308.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA stop_codon 21679382 21679384 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; exon_number "8"; exon_id "ENSE00002531308.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA UTR 21737457 21737569 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA UTR 21679082 21679384 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556628.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-022"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410231.1"; protein_id "ENSP00000451652.1"; +chr14 HAVANA transcript 21679092 21737559 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA exon 21737457 21737559 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "1"; exon_id "ENSE00002522231.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA exon 21699156 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "3"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA CDS 21699156 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "3"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA exon 21681228 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "5"; exon_id "ENSE00002443721.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA CDS 21681228 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "5"; exon_id "ENSE00002443721.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA exon 21679969 21680062 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "6"; exon_id "ENSE00002438976.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA CDS 21679969 21680062 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "6"; exon_id "ENSE00002438976.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "7"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA CDS 21679565 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "7"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA exon 21679092 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "8"; exon_id "ENSE00003481033.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA CDS 21679385 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "8"; exon_id "ENSE00003481033.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA stop_codon 21679382 21679384 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; exon_number "8"; exon_id "ENSE00003481033.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA UTR 21737457 21737559 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA UTR 21679092 21679384 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555883.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-016"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410232.1"; protein_id "ENSP00000450629.1"; +chr14 HAVANA transcript 21679092 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA exon 21737457 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "1"; exon_id "ENSE00001748127.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA exon 21731826 21731988 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "2"; exon_id "ENSE00002213720.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "3"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA exon 21699117 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "5"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000452214.1"; +chr14 HAVANA CDS 21699117 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "5"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000452214.1"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "6"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "6"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "7"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "7"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "8"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "8"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA exon 21679092 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "9"; exon_id "ENSE00003562811.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA CDS 21679449 21679465 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "9"; exon_id "ENSE00003562811.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA stop_codon 21679446 21679448 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; exon_number "9"; exon_id "ENSE00003562811.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA UTR 21737457 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA UTR 21731826 21731988 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA UTR 21679092 21679448 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556513.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-018"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "basic"; havana_transcript "OTTHUMT00000410233.1"; protein_id "ENSP00000452214.1"; +chr14 HAVANA transcript 21679096 21680161 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553444.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-032"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410234.1"; +chr14 HAVANA exon 21679969 21680161 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553444.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-032"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410234.1"; exon_number "1"; exon_id "ENSE00002518756.1"; +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553444.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-032"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410234.1"; exon_number "2"; exon_id "ENSE00003656701.1"; +chr14 HAVANA exon 21679096 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553444.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-032"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410234.1"; exon_number "3"; exon_id "ENSE00003675526.1"; +chr14 HAVANA transcript 21679096 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21737457 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "1"; exon_id "ENSE00001748127.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21699117 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "3"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21699117 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "3"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "7"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21679565 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "7"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21679096 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "8"; exon_id "ENSE00003672803.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21679385 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "8"; exon_id "ENSE00003672803.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA stop_codon 21679382 21679384 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; exon_number "8"; exon_id "ENSE00003672803.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21737457 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21679096 21679384 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-007"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410235.1"; protein_id "ENSP00000452276.1"; ccdsid "CCDS41915.1" +chr14 HAVANA transcript 21679096 21737601 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21737457 21737601 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "1"; exon_id "ENSE00002484154.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "2"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "3"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21699156 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "4"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21699156 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "4"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "5"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "5"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "6"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "6"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "7"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "7"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "8"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679565 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "8"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21679096 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "9"; exon_id "ENSE00003672803.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679385 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "9"; exon_id "ENSE00003672803.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA stop_codon 21679382 21679384 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; exon_number "9"; exon_id "ENSE00003672803.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21737457 21737601 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21679096 21679384 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553300.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-002"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410236.1"; protein_id "ENSP00000450544.1"; ccdsid "CCDS45079.1" +chr14 HAVANA transcript 21679125 21730836 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21730760 21730836 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "1"; exon_id "ENSE00002462370.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "2"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21699156 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "3"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21699156 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "3"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "4"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "5"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "6"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "7"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679565 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "7"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA exon 21679125 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "8"; exon_id "ENSE00002508059.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA CDS 21679385 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "8"; exon_id "ENSE00002508059.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA stop_codon 21679382 21679384 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; exon_number "8"; exon_id "ENSE00002508059.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21730760 21730836 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA UTR 21679125 21679384 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-019"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410239.1"; protein_id "ENSP00000451176.1"; ccdsid "CCDS45079.1" +chr14 HAVANA transcript 21679265 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21737457 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "1"; exon_id "ENSE00001748127.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21731826 21731988 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "2"; exon_id "ENSE00002213720.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "3"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21730760 21730927 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "4"; exon_id "ENSE00002206616.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "5"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "5"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "5"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21699117 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "6"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21699117 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "6"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "7"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "7"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "8"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "8"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "9"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "9"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "10"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21679565 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "10"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA exon 21679265 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "11"; exon_id "ENSE00002227407.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA CDS 21679385 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "11"; exon_id "ENSE00002227407.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA stop_codon 21679382 21679384 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; exon_number "11"; exon_id "ENSE00002227407.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21737457 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21731826 21731988 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21730760 21730927 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA UTR 21679265 21679384 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000420743.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-006"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "CCDS"; havana_transcript "OTTHUMT00000410240.1"; protein_id "ENSP00000404848.2"; ccdsid "CCDS41915.1" +chr14 HAVANA transcript 21679383 21699581 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA exon 21699524 21699581 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "1"; exon_id "ENSE00002512246.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA CDS 21699524 21699527 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "1"; exon_id "ENSE00002512246.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA start_codon 21699525 21699527 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "1"; exon_id "ENSE00002512246.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA exon 21699156 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "2"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA CDS 21699156 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "2"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "3"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "3"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "4"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "4"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "5"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "5"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "6"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA CDS 21679565 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "6"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA exon 21679383 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "7"; exon_id "ENSE00002517034.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA CDS 21679383 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; exon_number "7"; exon_id "ENSE00002517034.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA UTR 21699528 21699581 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557157.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-037"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410241.1"; protein_id "ENSP00000450601.1"; +chr14 HAVANA transcript 21679415 21737604 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA exon 21737457 21737604 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "1"; exon_id "ENSE00002446770.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "2"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA exon 21702378 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "3"; exon_id "ENSE00002464535.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA exon 21699156 21699186 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "4"; exon_id "ENSE00002500861.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA CDS 21699156 21699163 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "4"; exon_id "ENSE00002500861.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA start_codon 21699161 21699163 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "4"; exon_id "ENSE00002500861.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "5"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "5"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "6"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "6"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "7"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "7"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA exon 21679565 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "8"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA CDS 21679565 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "8"; exon_id "ENSE00003481206.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA exon 21679415 21679465 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "9"; exon_id "ENSE00002431651.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA CDS 21679415 21679465 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; exon_number "9"; exon_id "ENSE00002431651.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA UTR 21737457 21737604 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA UTR 21702378 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA UTR 21699164 21699186 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "HNRNPC-021"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410242.1"; protein_id "ENSP00000452545.1"; +chr14 HAVANA transcript 21679577 21737601 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA exon 21737457 21737601 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "1"; exon_id "ENSE00002484154.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA exon 21736782 21736827 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "2"; exon_id "ENSE00002432065.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "3"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA exon 21699156 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "5"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA CDS 21699156 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "5"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "6"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "6"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "7"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA CDS 21681119 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "7"; exon_id "ENSE00003639844.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "8"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA CDS 21679969 21680082 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "8"; exon_id "ENSE00003682034.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA exon 21679577 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "9"; exon_id "ENSE00002466252.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA CDS 21679577 21679725 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; exon_number "9"; exon_id "ENSE00002466252.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA UTR 21737457 21737601 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA UTR 21736782 21736827 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554383.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-027"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410243.1"; protein_id "ENSP00000452021.1"; +chr14 HAVANA transcript 21679618 21681578 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555585.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-031"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410244.1"; +chr14 HAVANA exon 21681119 21681578 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555585.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-031"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410244.1"; exon_number "1"; exon_id "ENSE00002456383.1"; +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555585.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-031"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410244.1"; exon_number "2"; exon_id "ENSE00003619206.1"; +chr14 HAVANA exon 21679618 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555585.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-031"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410244.1"; exon_number "3"; exon_id "ENSE00002488948.1"; +chr14 HAVANA transcript 21679649 21698819 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554417.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-025"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410245.1"; +chr14 HAVANA exon 21698478 21698819 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554417.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-025"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410245.1"; exon_number "1"; exon_id "ENSE00002535439.1"; +chr14 HAVANA exon 21681119 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554417.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-025"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410245.1"; exon_number "2"; exon_id "ENSE00003481717.1"; +chr14 HAVANA exon 21679969 21680082 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554417.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-025"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410245.1"; exon_number "3"; exon_id "ENSE00003619206.1"; +chr14 HAVANA exon 21679649 21679725 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554417.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-025"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410245.1"; exon_number "4"; exon_id "ENSE00002533430.1"; +chr14 HAVANA transcript 21681120 21737568 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA exon 21737457 21737568 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; exon_number "1"; exon_id "ENSE00002518085.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA exon 21736782 21736827 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; exon_number "2"; exon_id "ENSE00002432065.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; exon_number "3"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA exon 21699117 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; exon_number "5"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000452213.1"; +chr14 HAVANA CDS 21699117 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; exon_number "5"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000452213.1"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; exon_number "6"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; exon_number "6"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA exon 21681120 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; exon_number "7"; exon_id "ENSE00002520986.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA CDS 21681120 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; exon_number "7"; exon_id "ENSE00002520986.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA UTR 21737457 21737568 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA UTR 21736782 21736827 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555215.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-028"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410246.1"; protein_id "ENSP00000452213.1"; +chr14 HAVANA transcript 21681156 21737570 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA exon 21737457 21737570 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; exon_number "1"; exon_id "ENSE00002488017.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; exon_number "2"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA exon 21704532 21704619 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; exon_number "3"; exon_id "ENSE00002471885.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA exon 21699117 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; exon_number "5"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000452185.1"; +chr14 HAVANA CDS 21699117 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; exon_number "5"; exon_id "ENSE00000940635.3"; protein_id "ENSP00000452185.1"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; exon_number "6"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; exon_number "6"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA exon 21681156 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; exon_number "7"; exon_id "ENSE00002510885.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA CDS 21681156 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; exon_number "7"; exon_id "ENSE00002510885.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA UTR 21737457 21737570 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA UTR 21704532 21704619 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-033"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410247.1"; protein_id "ENSP00000452185.1"; +chr14 HAVANA transcript 21681264 21737551 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA exon 21737457 21737551 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; exon_number "1"; exon_id "ENSE00002475555.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA exon 21736782 21736827 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; exon_number "2"; exon_id "ENSE00002432065.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; exon_number "3"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA exon 21702928 21702990 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; exon_number "4"; exon_id "ENSE00002493557.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; exon_number "5"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; exon_number "5"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; exon_number "5"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA exon 21699156 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; exon_number "6"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA CDS 21699156 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; exon_number "6"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; exon_number "7"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA CDS 21698478 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; exon_number "7"; exon_id "ENSE00003657213.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA exon 21681264 21681276 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; exon_number "8"; exon_id "ENSE00002438134.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA CDS 21681264 21681276 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; exon_number "8"; exon_id "ENSE00002438134.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA UTR 21737457 21737551 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA UTR 21736782 21736827 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA UTR 21702928 21702990 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000554891.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-030"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410248.1"; protein_id "ENSP00000450467.1"; +chr14 HAVANA transcript 21698478 21737570 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA exon 21737457 21737570 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; exon_number "1"; exon_id "ENSE00002488017.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; exon_number "2"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA exon 21704532 21704619 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; exon_number "3"; exon_id "ENSE00002471885.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA exon 21699156 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; exon_number "5"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA CDS 21699156 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; exon_number "5"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA exon 21698478 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; exon_number "6"; exon_id "ENSE00003619710.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA CDS 21698481 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; exon_number "6"; exon_id "ENSE00003619710.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA stop_codon 21698478 21698480 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; exon_number "6"; exon_id "ENSE00003619710.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA UTR 21737457 21737570 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA UTR 21704532 21704619 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA UTR 21698478 21698480 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000556226.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-035"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410249.1"; protein_id "ENSP00000451292.1"; +chr14 HAVANA transcript 21698491 21736810 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA exon 21736782 21736810 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; exon_number "1"; exon_id "ENSE00002491408.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; exon_number "2"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA exon 21704532 21704619 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; exon_number "3"; exon_id "ENSE00002471885.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA CDS 21702112 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; exon_number "4"; exon_id "ENSE00003524718.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA exon 21699156 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; exon_number "5"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA CDS 21699156 21699231 . - 2 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; exon_number "5"; exon_id "ENSE00001726573.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA exon 21698491 21698525 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; exon_number "6"; exon_id "ENSE00002480348.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA CDS 21698491 21698525 . - 1 gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; exon_number "6"; exon_id "ENSE00002480348.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA UTR 21736782 21736810 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA UTR 21704532 21704619 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555176.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-034"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410250.1"; protein_id "ENSP00000452573.1"; +chr14 HAVANA transcript 21699057 21737582 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553614.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-024"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410251.1"; +chr14 HAVANA exon 21737457 21737582 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553614.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-024"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410251.1"; exon_number "1"; exon_id "ENSE00002268813.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553614.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-024"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410251.1"; exon_number "2"; exon_id "ENSE00002277537.1"; +chr14 HAVANA exon 21702112 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553614.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-024"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410251.1"; exon_number "3"; exon_id "ENSE00003560561.1"; +chr14 HAVANA exon 21699057 21699231 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000553614.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-024"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410251.1"; exon_number "4"; exon_id "ENSE00002525343.1"; +chr14 HAVANA transcript 21702154 21737565 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557336.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-029"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410252.1"; protein_id "ENSP00000451892.1"; +chr14 HAVANA exon 21737457 21737565 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557336.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-029"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410252.1"; exon_number "1"; exon_id "ENSE00002459679.1"; protein_id "ENSP00000451892.1"; +chr14 HAVANA exon 21731826 21731988 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557336.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-029"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410252.1"; exon_number "2"; exon_id "ENSE00002213720.1"; protein_id "ENSP00000451892.1"; +chr14 HAVANA exon 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557336.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-029"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410252.1"; exon_number "3"; exon_id "ENSE00002277537.1"; protein_id "ENSP00000451892.1"; +chr14 HAVANA exon 21722706 21722752 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557336.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-029"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410252.1"; exon_number "4"; exon_id "ENSE00002461142.1"; protein_id "ENSP00000451892.1"; +chr14 HAVANA exon 21702154 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557336.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-029"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410252.1"; exon_number "5"; exon_id "ENSE00002478864.1"; protein_id "ENSP00000451892.1"; +chr14 HAVANA CDS 21702154 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557336.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-029"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410252.1"; exon_number "5"; exon_id "ENSE00002478864.1"; protein_id "ENSP00000451892.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557336.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-029"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410252.1"; exon_number "5"; exon_id "ENSE00002478864.1"; protein_id "ENSP00000451892.1"; +chr14 HAVANA UTR 21737457 21737565 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557336.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-029"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410252.1"; protein_id "ENSP00000451892.1"; +chr14 HAVANA UTR 21731826 21731988 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557336.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-029"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410252.1"; protein_id "ENSP00000451892.1"; +chr14 HAVANA UTR 21731470 21731495 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557336.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-029"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410252.1"; protein_id "ENSP00000451892.1"; +chr14 HAVANA UTR 21722706 21722752 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557336.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-029"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410252.1"; protein_id "ENSP00000451892.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557336.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-029"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410252.1"; protein_id "ENSP00000451892.1"; +chr14 HAVANA transcript 21702190 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557768.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-036"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410253.1"; protein_id "ENSP00000450669.1"; +chr14 HAVANA exon 21737457 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557768.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-036"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410253.1"; exon_number "1"; exon_id "ENSE00001748127.1"; protein_id "ENSP00000450669.1"; +chr14 HAVANA exon 21731470 21731741 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557768.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-036"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410253.1"; exon_number "2"; exon_id "ENSE00002488844.1"; protein_id "ENSP00000450669.1"; +chr14 HAVANA exon 21702190 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557768.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-036"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410253.1"; exon_number "3"; exon_id "ENSE00002477273.1"; protein_id "ENSP00000450669.1"; +chr14 HAVANA CDS 21702190 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557768.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-036"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410253.1"; exon_number "3"; exon_id "ENSE00002477273.1"; protein_id "ENSP00000450669.1"; +chr14 HAVANA start_codon 21702350 21702352 . - 0 gene_id "ENSG00000092199.13"; transcript_id "ENST00000557768.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-036"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410253.1"; exon_number "3"; exon_id "ENSE00002477273.1"; protein_id "ENSP00000450669.1"; +chr14 HAVANA UTR 21737457 21737584 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557768.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-036"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410253.1"; protein_id "ENSP00000450669.1"; +chr14 HAVANA UTR 21731470 21731741 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557768.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-036"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410253.1"; protein_id "ENSP00000450669.1"; +chr14 HAVANA UTR 21702353 21702388 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557768.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HNRNPC-036"; level "2"; havana_gene "OTTHUMG00000170757.1"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000410253.1"; protein_id "ENSP00000450669.1"; +chr14 HAVANA transcript 21730762 21737601 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557033.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-023"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410254.1"; +chr14 HAVANA exon 21737457 21737601 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557033.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-023"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410254.1"; exon_number "1"; exon_id "ENSE00002484154.1"; +chr14 HAVANA exon 21731470 21731988 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557033.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-023"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410254.1"; exon_number "2"; exon_id "ENSE00002464820.1"; +chr14 HAVANA exon 21730762 21730857 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000557033.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-023"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410254.1"; exon_number "3"; exon_id "ENSE00002464279.1"; +chr14 HAVANA transcript 21731152 21737548 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555127.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-026"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410255.1"; +chr14 HAVANA exon 21737457 21737548 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555127.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-026"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410255.1"; exon_number "1"; exon_id "ENSE00002506273.1"; +chr14 HAVANA exon 21731152 21731988 . - . gene_id "ENSG00000092199.13"; transcript_id "ENST00000555127.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HNRNPC"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HNRNPC-026"; level "2"; havana_gene "OTTHUMG00000170757.1"; havana_transcript "OTTHUMT00000410255.1"; exon_number "2"; exon_id "ENSE00002505210.1"; +chr18 HAVANA gene 76829285 77138283 . + . gene_id "ENSG00000166377.15"; transcript_id "ENSG00000166377.15"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B"; level "1"; havana_gene "OTTHUMG00000132898.4"; +chr18 HAVANA transcript 76829285 76856481 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588600.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-011"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450472.1"; protein_id "ENSP00000465158.1"; +chr18 HAVANA exon 76829285 76829529 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588600.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-011"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450472.1"; exon_number "1"; exon_id "ENSE00002969364.1"; protein_id "ENSP00000465158.1"; +chr18 HAVANA CDS 76829411 76829529 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588600.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-011"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450472.1"; exon_number "1"; exon_id "ENSE00002969364.1"; protein_id "ENSP00000465158.1"; +chr18 HAVANA start_codon 76829411 76829413 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588600.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-011"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450472.1"; exon_number "1"; exon_id "ENSE00002969364.1"; protein_id "ENSP00000465158.1"; +chr18 HAVANA exon 76837982 76838157 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588600.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-011"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450472.1"; exon_number "2"; exon_id "ENSE00003498367.1"; protein_id "ENSP00000465158.1"; +chr18 HAVANA CDS 76837982 76838157 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588600.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-011"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450472.1"; exon_number "2"; exon_id "ENSE00003498367.1"; protein_id "ENSP00000465158.1"; +chr18 HAVANA exon 76856476 76856481 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588600.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-011"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450472.1"; exon_number "3"; exon_id "ENSE00002796281.1"; protein_id "ENSP00000465158.1"; +chr18 HAVANA CDS 76856476 76856481 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588600.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-011"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450472.1"; exon_number "3"; exon_id "ENSE00002796281.1"; protein_id "ENSP00000465158.1"; +chr18 HAVANA UTR 76829285 76829410 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588600.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-011"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450472.1"; protein_id "ENSP00000465158.1"; +chr18 HAVANA transcript 76829392 77015271 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA exon 76829392 76829529 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "1"; exon_id "ENSE00002765963.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA CDS 76829411 76829529 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "1"; exon_id "ENSE00002765963.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA start_codon 76829411 76829413 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "1"; exon_id "ENSE00002765963.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA exon 76856476 76856649 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "2"; exon_id "ENSE00003649880.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA CDS 76856476 76856649 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "2"; exon_id "ENSE00003649880.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA exon 76870355 76870505 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "3"; exon_id "ENSE00003500111.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA CDS 76870355 76870505 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "3"; exon_id "ENSE00003500111.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA exon 76873241 76873354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "4"; exon_id "ENSE00003460183.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA CDS 76873241 76873354 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "4"; exon_id "ENSE00003460183.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA exon 76886267 76886375 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "5"; exon_id "ENSE00003573559.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA CDS 76886267 76886375 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "5"; exon_id "ENSE00003573559.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA exon 76903802 76903860 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "6"; exon_id "ENSE00003637813.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA CDS 76903802 76903860 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "6"; exon_id "ENSE00003637813.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA exon 76914504 76914555 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "7"; exon_id "ENSE00003606422.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA CDS 76914504 76914555 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "7"; exon_id "ENSE00003606422.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA exon 76953183 76953263 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "8"; exon_id "ENSE00003573827.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA CDS 76953183 76953263 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "8"; exon_id "ENSE00003573827.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA exon 76966937 76967012 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "9"; exon_id "ENSE00003581181.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA CDS 76966937 76966944 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "9"; exon_id "ENSE00003581181.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA stop_codon 76966945 76966947 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "9"; exon_id "ENSE00003581181.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA exon 77013381 77015271 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; exon_number "10"; exon_id "ENSE00002751458.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA UTR 76829392 76829410 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA UTR 76966945 76967012 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA UTR 77013381 77015271 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586366.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-003"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450473.1"; protein_id "ENSP00000467386.1"; +chr18 HAVANA transcript 76829394 77138283 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 76829394 76829529 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "1"; exon_id "ENSE00002804876.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 76829411 76829529 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "1"; exon_id "ENSE00002804876.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA start_codon 76829411 76829413 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "1"; exon_id "ENSE00002804876.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 76856476 76856649 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "2"; exon_id "ENSE00003649880.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 76856476 76856649 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "2"; exon_id "ENSE00003649880.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 76870355 76870505 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "3"; exon_id "ENSE00003500111.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 76870355 76870505 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "3"; exon_id "ENSE00003500111.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 76873241 76873354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "4"; exon_id "ENSE00003460183.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 76873241 76873354 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "4"; exon_id "ENSE00003460183.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 76886267 76886375 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "5"; exon_id "ENSE00003573559.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 76886267 76886375 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "5"; exon_id "ENSE00003573559.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 76903802 76903860 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "6"; exon_id "ENSE00003637813.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 76903802 76903860 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "6"; exon_id "ENSE00003637813.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 76914504 76914555 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "7"; exon_id "ENSE00003606422.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 76914504 76914555 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "7"; exon_id "ENSE00003606422.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 76936813 76936907 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "8"; exon_id "ENSE00003626646.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 76936813 76936907 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "8"; exon_id "ENSE00003626646.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 76953183 76953263 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "9"; exon_id "ENSE00003661910.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 76953183 76953263 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "9"; exon_id "ENSE00003661910.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 76966937 76967012 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "10"; exon_id "ENSE00003683253.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 76966937 76967012 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "10"; exon_id "ENSE00003683253.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 76973962 76974038 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "11"; exon_id "ENSE00003605429.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 76973962 76974038 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "11"; exon_id "ENSE00003605429.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77013381 77013541 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "12"; exon_id "ENSE00003648208.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77013381 77013541 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "12"; exon_id "ENSE00003648208.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77037054 77037196 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "13"; exon_id "ENSE00003659061.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77037054 77037196 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "13"; exon_id "ENSE00003659061.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77063604 77063716 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "14"; exon_id "ENSE00003664371.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77063604 77063716 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "14"; exon_id "ENSE00003664371.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77066986 77067234 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "15"; exon_id "ENSE00003586322.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77066986 77067234 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "15"; exon_id "ENSE00003586322.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77089141 77089302 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "16"; exon_id "ENSE00003608960.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77089141 77089302 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "16"; exon_id "ENSE00003608960.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77090012 77090104 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "17"; exon_id "ENSE00003651762.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77090012 77090104 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "17"; exon_id "ENSE00003651762.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77096628 77096711 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "18"; exon_id "ENSE00003659967.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77096628 77096711 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "18"; exon_id "ENSE00003659967.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77097279 77097449 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "19"; exon_id "ENSE00003642337.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77097279 77097449 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "19"; exon_id "ENSE00003642337.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77102268 77102366 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "20"; exon_id "ENSE00003542338.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77102268 77102366 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "20"; exon_id "ENSE00003542338.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77104265 77104354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "21"; exon_id "ENSE00003582657.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77104265 77104354 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "21"; exon_id "ENSE00003582657.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77105428 77105572 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "22"; exon_id "ENSE00003566056.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77105428 77105572 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "22"; exon_id "ENSE00003566056.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77105775 77105839 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "23"; exon_id "ENSE00003512812.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77105775 77105839 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "23"; exon_id "ENSE00003512812.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77107770 77107925 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "24"; exon_id "ENSE00003522135.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77107770 77107925 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "24"; exon_id "ENSE00003522135.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77108132 77108196 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "25"; exon_id "ENSE00003676250.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77108132 77108196 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "25"; exon_id "ENSE00003676250.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77119354 77119462 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "26"; exon_id "ENSE00003566891.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77119354 77119462 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "26"; exon_id "ENSE00003566891.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77132825 77132882 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "27"; exon_id "ENSE00003588591.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77132825 77132882 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "27"; exon_id "ENSE00003588591.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77133898 77134101 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "28"; exon_id "ENSE00003677118.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77133898 77134101 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "28"; exon_id "ENSE00003677118.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77135394 77135426 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "29"; exon_id "ENSE00003632982.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77135394 77135426 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "29"; exon_id "ENSE00003632982.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA exon 77137247 77138283 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "30"; exon_id "ENSE00002907374.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA CDS 77137247 77137380 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "30"; exon_id "ENSE00002907374.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA stop_codon 77137381 77137383 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; exon_number "30"; exon_id "ENSE00002907374.1"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA UTR 76829394 76829410 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA UTR 77137381 77138283 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000426216.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-001"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "CCDS"; havana_transcript "OTTHUMT00000256402.3"; protein_id "ENSP00000398076.2"; ccdsid "CCDS12014.1" +chr18 HAVANA transcript 76829397 77137491 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 76829397 76829529 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "1"; exon_id "ENSE00002708578.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 76829411 76829529 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "1"; exon_id "ENSE00002708578.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA start_codon 76829411 76829413 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "1"; exon_id "ENSE00002708578.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 76856476 76856649 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "2"; exon_id "ENSE00003649880.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 76856476 76856649 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "2"; exon_id "ENSE00003649880.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 76870355 76870505 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "3"; exon_id "ENSE00003500111.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 76870355 76870505 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "3"; exon_id "ENSE00003500111.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 76873241 76873354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "4"; exon_id "ENSE00003460183.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 76873241 76873354 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "4"; exon_id "ENSE00003460183.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 76886267 76886375 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "5"; exon_id "ENSE00003573559.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 76886267 76886375 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "5"; exon_id "ENSE00003573559.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 76903802 76903860 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "6"; exon_id "ENSE00003637813.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 76903802 76903860 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "6"; exon_id "ENSE00003637813.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 76914504 76914555 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "7"; exon_id "ENSE00003606422.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 76914504 76914555 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "7"; exon_id "ENSE00003606422.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 76936813 76936907 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "8"; exon_id "ENSE00003626646.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 76936813 76936907 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "8"; exon_id "ENSE00003626646.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 76953183 76953263 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "9"; exon_id "ENSE00003661910.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 76953183 76953263 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "9"; exon_id "ENSE00003661910.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 76966937 76967012 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "10"; exon_id "ENSE00003683253.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 76966937 76967012 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "10"; exon_id "ENSE00003683253.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 76973962 76974038 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "11"; exon_id "ENSE00003605429.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 76973962 76974038 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "11"; exon_id "ENSE00003605429.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77013381 77013541 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "12"; exon_id "ENSE00003648208.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77013381 77013541 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "12"; exon_id "ENSE00003648208.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77037054 77037196 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "13"; exon_id "ENSE00003659061.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77037054 77037196 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "13"; exon_id "ENSE00003659061.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77063604 77063716 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "14"; exon_id "ENSE00003664371.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77063604 77063716 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "14"; exon_id "ENSE00003664371.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77066986 77067234 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "15"; exon_id "ENSE00003586322.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77066986 77067234 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "15"; exon_id "ENSE00003586322.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77089141 77089302 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "16"; exon_id "ENSE00003608960.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77089141 77089302 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "16"; exon_id "ENSE00003608960.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77090012 77090104 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "17"; exon_id "ENSE00003651762.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77090012 77090104 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "17"; exon_id "ENSE00003651762.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77096628 77096711 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "18"; exon_id "ENSE00003659967.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77096628 77096711 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "18"; exon_id "ENSE00003659967.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77097279 77097449 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "19"; exon_id "ENSE00003642337.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77097279 77097449 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "19"; exon_id "ENSE00003642337.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77102268 77102366 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "20"; exon_id "ENSE00003542338.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77102268 77102366 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "20"; exon_id "ENSE00003542338.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77104265 77104354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "21"; exon_id "ENSE00003582657.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77104265 77104354 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "21"; exon_id "ENSE00003582657.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77105428 77105572 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "22"; exon_id "ENSE00003566056.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77105428 77105572 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "22"; exon_id "ENSE00003566056.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77105775 77105839 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "23"; exon_id "ENSE00003512812.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77105775 77105839 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "23"; exon_id "ENSE00003512812.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77107770 77107925 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "24"; exon_id "ENSE00003522135.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77107770 77107925 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "24"; exon_id "ENSE00003522135.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77108132 77108196 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "25"; exon_id "ENSE00003676250.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77108132 77108196 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "25"; exon_id "ENSE00003676250.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77119354 77119462 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "26"; exon_id "ENSE00003566891.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77119354 77119462 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "26"; exon_id "ENSE00003566891.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77132825 77132882 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "27"; exon_id "ENSE00003588591.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77132825 77132882 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "27"; exon_id "ENSE00003588591.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77133898 77134101 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "28"; exon_id "ENSE00003677118.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77133898 77134101 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "28"; exon_id "ENSE00003677118.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA exon 77137247 77137491 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "29"; exon_id "ENSE00001835124.2"; protein_id "ENSP00000304500.7"; +chr18 HAVANA CDS 77137247 77137380 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "29"; exon_id "ENSE00001835124.2"; protein_id "ENSP00000304500.7"; +chr18 HAVANA stop_codon 77137381 77137383 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; exon_number "29"; exon_id "ENSE00001835124.2"; protein_id "ENSP00000304500.7"; +chr18 HAVANA UTR 76829397 76829410 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA UTR 77137381 77137491 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000307671.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-004"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "appris_principal"; havana_transcript "OTTHUMT00000450474.1"; protein_id "ENSP00000304500.7"; +chr18 HAVANA transcript 76829406 76914529 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA exon 76829406 76829529 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; exon_number "1"; exon_id "ENSE00002362854.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA CDS 76829411 76829529 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; exon_number "1"; exon_id "ENSE00002362854.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA start_codon 76829411 76829413 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; exon_number "1"; exon_id "ENSE00002362854.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA exon 76870355 76870505 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; exon_number "2"; exon_id "ENSE00003500111.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA CDS 76870355 76870505 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; exon_number "2"; exon_id "ENSE00003500111.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA exon 76873241 76873354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; exon_number "3"; exon_id "ENSE00003460183.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA CDS 76873241 76873354 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; exon_number "3"; exon_id "ENSE00003460183.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA exon 76886267 76886375 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; exon_number "4"; exon_id "ENSE00003573559.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA CDS 76886267 76886375 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; exon_number "4"; exon_id "ENSE00003573559.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA exon 76903802 76903860 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; exon_number "5"; exon_id "ENSE00003637813.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA CDS 76903802 76903860 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; exon_number "5"; exon_id "ENSE00003637813.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA exon 76914504 76914529 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; exon_number "6"; exon_id "ENSE00002948120.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA CDS 76914504 76914529 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; exon_number "6"; exon_id "ENSE00002948120.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA UTR 76829406 76829410 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586672.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "NOVEL"; transcript_name "ATP9B-012"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_end_NF"; havana_transcript "OTTHUMT00000450475.1"; protein_id "ENSP00000468218.1"; +chr18 HAVANA transcript 76829408 76876082 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA exon 76829408 76829529 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; exon_number "1"; exon_id "ENSE00002758267.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA CDS 76829411 76829529 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; exon_number "1"; exon_id "ENSE00002758267.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA start_codon 76829411 76829413 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; exon_number "1"; exon_id "ENSE00002758267.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA exon 76856476 76856649 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; exon_number "2"; exon_id "ENSE00003649880.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA CDS 76856476 76856649 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; exon_number "2"; exon_id "ENSE00003649880.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA exon 76870355 76870505 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; exon_number "3"; exon_id "ENSE00003500111.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA CDS 76870355 76870505 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; exon_number "3"; exon_id "ENSE00003500111.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA exon 76873241 76873354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; exon_number "4"; exon_id "ENSE00003460183.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA CDS 76873241 76873354 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; exon_number "4"; exon_id "ENSE00003460183.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA exon 76874994 76876082 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; exon_number "5"; exon_id "ENSE00002957606.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA CDS 76874994 76874999 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; exon_number "5"; exon_id "ENSE00002957606.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA stop_codon 76875000 76875002 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; exon_number "5"; exon_id "ENSE00002957606.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA UTR 76829408 76829410 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA UTR 76875000 76876082 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586722.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-006"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450477.1"; protein_id "ENSP00000466992.1"; +chr18 HAVANA transcript 76829482 76903859 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000591464.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ATP9B-014"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450478.1"; +chr18 HAVANA exon 76829482 76829529 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000591464.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ATP9B-014"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450478.1"; exon_number "1"; exon_id "ENSE00002804994.1"; +chr18 HAVANA exon 76837982 76838157 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000591464.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ATP9B-014"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450478.1"; exon_number "2"; exon_id "ENSE00003599194.1"; +chr18 HAVANA exon 76856476 76856649 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000591464.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ATP9B-014"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450478.1"; exon_number "3"; exon_id "ENSE00003655327.1"; +chr18 HAVANA exon 76886267 76886375 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000591464.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ATP9B-014"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450478.1"; exon_number "4"; exon_id "ENSE00003469463.1"; +chr18 HAVANA exon 76903802 76903859 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000591464.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ATP9B-014"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; havana_transcript "OTTHUMT00000450478.1"; exon_number "5"; exon_id "ENSE00002956704.1"; +chr18 ENSEMBL transcript 76829490 76876070 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; protein_id "ENSP00000442794.1"; +chr18 ENSEMBL exon 76829490 76829529 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "1"; exon_id "ENSE00002223259.1"; protein_id "ENSP00000442794.1"; +chr18 ENSEMBL exon 76856476 76856649 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "2"; exon_id "ENSE00003467004.1"; protein_id "ENSP00000442794.1"; +chr18 ENSEMBL CDS 76856513 76856649 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "2"; exon_id "ENSE00003467004.1"; protein_id "ENSP00000442794.1"; +chr18 ENSEMBL start_codon 76856513 76856515 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "2"; exon_id "ENSE00003467004.1"; protein_id "ENSP00000442794.1"; +chr18 ENSEMBL exon 76870355 76870505 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "3"; exon_id "ENSE00003500111.1"; protein_id "ENSP00000442794.1"; +chr18 ENSEMBL CDS 76870355 76870505 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "3"; exon_id "ENSE00003500111.1"; protein_id "ENSP00000442794.1"; +chr18 ENSEMBL exon 76873241 76873354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "4"; exon_id "ENSE00003460183.1"; protein_id "ENSP00000442794.1"; +chr18 ENSEMBL CDS 76873241 76873354 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "4"; exon_id "ENSE00003460183.1"; protein_id "ENSP00000442794.1"; +chr18 ENSEMBL exon 76874994 76876070 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "5"; exon_id "ENSE00002073242.2"; protein_id "ENSP00000442794.1"; +chr18 ENSEMBL CDS 76874994 76874999 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "5"; exon_id "ENSE00002073242.2"; protein_id "ENSP00000442794.1"; +chr18 ENSEMBL stop_codon 76875000 76875002 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "5"; exon_id "ENSE00002073242.2"; protein_id "ENSP00000442794.1"; +chr18 ENSEMBL UTR 76829490 76829529 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; protein_id "ENSP00000442794.1"; +chr18 ENSEMBL UTR 76856476 76856512 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; protein_id "ENSP00000442794.1"; +chr18 ENSEMBL UTR 76875000 76876070 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000458297.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-201"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; protein_id "ENSP00000442794.1"; +chr18 HAVANA transcript 76847307 77037268 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; +chr18 HAVANA exon 76847307 76847678 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; exon_number "1"; exon_id "ENSE00002810315.1"; +chr18 HAVANA exon 76856476 76856649 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; exon_number "2"; exon_id "ENSE00003655327.1"; +chr18 HAVANA exon 76870355 76870505 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; exon_number "3"; exon_id "ENSE00003662299.1"; +chr18 HAVANA exon 76873241 76873354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; exon_number "4"; exon_id "ENSE00003550012.1"; +chr18 HAVANA exon 76886267 76886375 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; exon_number "5"; exon_id "ENSE00003469463.1"; +chr18 HAVANA exon 76903802 76903860 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; exon_number "6"; exon_id "ENSE00003572577.1"; +chr18 HAVANA exon 76914504 76914555 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; exon_number "7"; exon_id "ENSE00003603293.1"; +chr18 HAVANA exon 76953183 76953263 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; exon_number "8"; exon_id "ENSE00003628953.1"; +chr18 HAVANA exon 76954386 76954492 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; exon_number "9"; exon_id "ENSE00002835343.1"; +chr18 HAVANA exon 76966937 76967012 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; exon_number "10"; exon_id "ENSE00003503130.1"; +chr18 HAVANA exon 76969548 76969722 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; exon_number "11"; exon_id "ENSE00002819027.1"; +chr18 HAVANA exon 76973962 76974038 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; exon_number "12"; exon_id "ENSE00003541486.1"; +chr18 HAVANA exon 77013381 77013541 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; exon_number "13"; exon_id "ENSE00003523156.1"; +chr18 HAVANA exon 77037054 77037268 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590271.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-007"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450479.1"; exon_number "14"; exon_id "ENSE00002913996.1"; +chr18 HAVANA transcript 76847315 76856535 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000591395.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "ATP9B-013"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450480.1"; +chr18 HAVANA exon 76847315 76847678 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000591395.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "ATP9B-013"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450480.1"; exon_number "1"; exon_id "ENSE00002775156.1"; +chr18 HAVANA exon 76855633 76855762 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000591395.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "ATP9B-013"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450480.1"; exon_number "2"; exon_id "ENSE00002808472.1"; +chr18 HAVANA exon 76856476 76856535 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000591395.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "PUTATIVE"; transcript_name "ATP9B-013"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450480.1"; exon_number "3"; exon_id "ENSE00002894762.1"; +chr18 HAVANA transcript 76873310 77124284 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; +chr18 HAVANA exon 76873310 76873354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "1"; exon_id "ENSE00002794684.1"; +chr18 HAVANA exon 76886267 76886375 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "2"; exon_id "ENSE00003469463.1"; +chr18 HAVANA exon 76903802 76903860 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "3"; exon_id "ENSE00003572577.1"; +chr18 HAVANA exon 76914504 76914555 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "4"; exon_id "ENSE00003603293.1"; +chr18 HAVANA exon 76933702 76933733 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "5"; exon_id "ENSE00002816486.1"; +chr18 HAVANA exon 76936813 76936907 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "6"; exon_id "ENSE00003468446.1"; +chr18 HAVANA exon 76953183 76953263 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "7"; exon_id "ENSE00003628953.1"; +chr18 HAVANA exon 76966937 76967012 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "8"; exon_id "ENSE00003503130.1"; +chr18 HAVANA exon 76973962 76974038 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "9"; exon_id "ENSE00003541486.1"; +chr18 HAVANA exon 77013381 77013541 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "10"; exon_id "ENSE00003523156.1"; +chr18 HAVANA exon 77037054 77037196 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "11"; exon_id "ENSE00003661817.1"; +chr18 HAVANA exon 77063604 77063716 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "12"; exon_id "ENSE00003601767.1"; +chr18 HAVANA exon 77066986 77067234 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "13"; exon_id "ENSE00003480914.1"; +chr18 HAVANA exon 77089141 77089302 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "14"; exon_id "ENSE00003641384.1"; +chr18 HAVANA exon 77090012 77090104 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "15"; exon_id "ENSE00003521947.1"; +chr18 HAVANA exon 77096628 77096711 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "16"; exon_id "ENSE00003657473.1"; +chr18 HAVANA exon 77097279 77097449 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "17"; exon_id "ENSE00003547794.1"; +chr18 HAVANA exon 77102268 77102366 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "18"; exon_id "ENSE00003523459.1"; +chr18 HAVANA exon 77104265 77104354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "19"; exon_id "ENSE00003649303.1"; +chr18 HAVANA exon 77105428 77105572 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "20"; exon_id "ENSE00003647546.1"; +chr18 HAVANA exon 77105775 77105839 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "21"; exon_id "ENSE00003617473.1"; +chr18 HAVANA exon 77107770 77107925 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "22"; exon_id "ENSE00003599416.1"; +chr18 HAVANA exon 77108132 77108196 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "23"; exon_id "ENSE00003683499.1"; +chr18 HAVANA exon 77119354 77124284 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000490210.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-008"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450481.1"; exon_number "24"; exon_id "ENSE00002749489.1"; +chr18 HAVANA transcript 76886267 76904286 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590608.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-015"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450482.1"; +chr18 HAVANA exon 76886267 76886375 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590608.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-015"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450482.1"; exon_number "1"; exon_id "ENSE00003469463.1"; +chr18 HAVANA exon 76903802 76904286 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590608.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-015"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450482.1"; exon_number "2"; exon_id "ENSE00002960507.1"; +chr18 HAVANA transcript 76914502 76954608 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588772.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-016"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450483.1"; +chr18 HAVANA exon 76914502 76914555 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588772.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-016"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450483.1"; exon_number "1"; exon_id "ENSE00002928940.1"; +chr18 HAVANA exon 76936813 76936907 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588772.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-016"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450483.1"; exon_number "2"; exon_id "ENSE00003468446.1"; +chr18 HAVANA exon 76953183 76953263 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588772.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-016"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450483.1"; exon_number "3"; exon_id "ENSE00003628953.1"; +chr18 HAVANA exon 76954386 76954608 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588772.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-016"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450483.1"; exon_number "4"; exon_id "ENSE00002761284.1"; +chr18 HAVANA transcript 76966936 77037264 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000585674.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-017"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450484.1"; +chr18 HAVANA exon 76966936 76967012 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000585674.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-017"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450484.1"; exon_number "1"; exon_id "ENSE00002751017.1"; +chr18 HAVANA exon 76973962 76974038 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000585674.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-017"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450484.1"; exon_number "2"; exon_id "ENSE00003541486.1"; +chr18 HAVANA exon 77013381 77013541 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000585674.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-017"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450484.1"; exon_number "3"; exon_id "ENSE00003523156.1"; +chr18 HAVANA exon 77037054 77037264 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000585674.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-017"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450484.1"; exon_number "4"; exon_id "ENSE00002853676.1"; +chr18 HAVANA transcript 76966977 77037200 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587878.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-018"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450485.1"; protein_id "ENSP00000465300.1"; +chr18 HAVANA exon 76966977 76967012 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587878.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-018"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450485.1"; exon_number "1"; exon_id "ENSE00002850778.1"; protein_id "ENSP00000465300.1"; +chr18 HAVANA CDS 76966977 76967012 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000587878.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-018"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450485.1"; exon_number "1"; exon_id "ENSE00002850778.1"; protein_id "ENSP00000465300.1"; +chr18 HAVANA exon 77013381 77013541 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587878.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-018"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450485.1"; exon_number "2"; exon_id "ENSE00003614105.1"; protein_id "ENSP00000465300.1"; +chr18 HAVANA CDS 77013381 77013397 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000587878.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-018"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450485.1"; exon_number "2"; exon_id "ENSE00003614105.1"; protein_id "ENSP00000465300.1"; +chr18 HAVANA stop_codon 77013398 77013400 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000587878.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-018"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450485.1"; exon_number "2"; exon_id "ENSE00003614105.1"; protein_id "ENSP00000465300.1"; +chr18 HAVANA exon 77037054 77037200 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587878.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-018"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450485.1"; exon_number "3"; exon_id "ENSE00002809399.1"; protein_id "ENSP00000465300.1"; +chr18 HAVANA UTR 77013398 77013541 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587878.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-018"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450485.1"; protein_id "ENSP00000465300.1"; +chr18 HAVANA UTR 77037054 77037200 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587878.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-018"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450485.1"; protein_id "ENSP00000465300.1"; +chr18 HAVANA transcript 77059899 77089213 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590163.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ATP9B-019"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450486.1"; +chr18 HAVANA exon 77059899 77059991 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590163.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ATP9B-019"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450486.1"; exon_number "1"; exon_id "ENSE00002919615.1"; +chr18 HAVANA exon 77063604 77063716 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590163.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ATP9B-019"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450486.1"; exon_number "2"; exon_id "ENSE00003601767.1"; +chr18 HAVANA exon 77066986 77067234 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590163.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ATP9B-019"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450486.1"; exon_number "3"; exon_id "ENSE00003480914.1"; +chr18 HAVANA exon 77089141 77089213 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590163.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ATP9B-019"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450486.1"; exon_number "4"; exon_id "ENSE00002968259.1"; +chr18 HAVANA transcript 77063604 77067440 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000591518.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-020"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450487.1"; +chr18 HAVANA exon 77063604 77063716 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000591518.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-020"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450487.1"; exon_number "1"; exon_id "ENSE00003601767.1"; +chr18 HAVANA exon 77066986 77067440 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000591518.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-020"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450487.1"; exon_number "2"; exon_id "ENSE00002740002.1"; +chr18 HAVANA transcript 77067112 77092998 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589326.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-021"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450488.1"; protein_id "ENSP00000464761.1"; +chr18 HAVANA exon 77067112 77067234 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589326.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-021"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450488.1"; exon_number "1"; exon_id "ENSE00002748328.1"; protein_id "ENSP00000464761.1"; +chr18 HAVANA CDS 77067112 77067234 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000589326.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-021"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450488.1"; exon_number "1"; exon_id "ENSE00002748328.1"; protein_id "ENSP00000464761.1"; +chr18 HAVANA exon 77089141 77089302 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589326.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-021"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450488.1"; exon_number "2"; exon_id "ENSE00003608960.1"; protein_id "ENSP00000464761.1"; +chr18 HAVANA CDS 77089141 77089302 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000589326.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-021"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450488.1"; exon_number "2"; exon_id "ENSE00003608960.1"; protein_id "ENSP00000464761.1"; +chr18 HAVANA exon 77090012 77090104 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589326.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-021"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450488.1"; exon_number "3"; exon_id "ENSE00003651762.1"; protein_id "ENSP00000464761.1"; +chr18 HAVANA CDS 77090012 77090104 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000589326.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-021"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450488.1"; exon_number "3"; exon_id "ENSE00003651762.1"; protein_id "ENSP00000464761.1"; +chr18 HAVANA exon 77092828 77092998 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589326.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-021"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450488.1"; exon_number "4"; exon_id "ENSE00002918321.1"; protein_id "ENSP00000464761.1"; +chr18 HAVANA CDS 77092828 77092884 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000589326.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-021"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450488.1"; exon_number "4"; exon_id "ENSE00002918321.1"; protein_id "ENSP00000464761.1"; +chr18 HAVANA stop_codon 77092885 77092887 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000589326.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-021"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450488.1"; exon_number "4"; exon_id "ENSE00002918321.1"; protein_id "ENSP00000464761.1"; +chr18 HAVANA UTR 77092885 77092998 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589326.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-021"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450488.1"; protein_id "ENSP00000464761.1"; +chr18 HAVANA transcript 77067190 77093000 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589732.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-022"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450489.1"; protein_id "ENSP00000468540.1"; +chr18 HAVANA exon 77067190 77067234 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589732.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-022"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450489.1"; exon_number "1"; exon_id "ENSE00002947455.1"; protein_id "ENSP00000468540.1"; +chr18 HAVANA CDS 77067190 77067234 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000589732.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-022"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450489.1"; exon_number "1"; exon_id "ENSE00002947455.1"; protein_id "ENSP00000468540.1"; +chr18 HAVANA exon 77089141 77089302 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589732.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-022"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450489.1"; exon_number "2"; exon_id "ENSE00003608960.1"; protein_id "ENSP00000468540.1"; +chr18 HAVANA CDS 77089141 77089302 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000589732.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-022"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450489.1"; exon_number "2"; exon_id "ENSE00003608960.1"; protein_id "ENSP00000468540.1"; +chr18 HAVANA exon 77090012 77090104 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589732.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-022"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450489.1"; exon_number "3"; exon_id "ENSE00003651762.1"; protein_id "ENSP00000468540.1"; +chr18 HAVANA CDS 77090012 77090104 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000589732.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-022"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450489.1"; exon_number "3"; exon_id "ENSE00003651762.1"; protein_id "ENSP00000468540.1"; +chr18 HAVANA exon 77092854 77093000 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589732.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-022"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450489.1"; exon_number "4"; exon_id "ENSE00002777839.1"; protein_id "ENSP00000468540.1"; +chr18 HAVANA CDS 77092854 77092973 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000589732.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-022"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450489.1"; exon_number "4"; exon_id "ENSE00002777839.1"; protein_id "ENSP00000468540.1"; +chr18 HAVANA stop_codon 77092974 77092976 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000589732.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-022"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450489.1"; exon_number "4"; exon_id "ENSE00002777839.1"; protein_id "ENSP00000468540.1"; +chr18 HAVANA UTR 77092974 77093000 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589732.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "ATP9B-022"; level "1"; havana_gene "OTTHUMG00000132898.4"; tag "exp_conf"; havana_transcript "OTTHUMT00000450489.1"; protein_id "ENSP00000468540.1"; +chr18 ENSEMBL transcript 77090080 77138141 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL exon 77090080 77090104 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "1"; exon_id "ENSE00002265012.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL exon 77096628 77096711 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "2"; exon_id "ENSE00003594322.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL CDS 77096637 77096711 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "2"; exon_id "ENSE00003594322.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL start_codon 77096637 77096639 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "2"; exon_id "ENSE00003594322.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL exon 77097279 77097449 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "3"; exon_id "ENSE00003642337.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL CDS 77097279 77097449 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "3"; exon_id "ENSE00003642337.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL exon 77102268 77102366 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "4"; exon_id "ENSE00003542338.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL CDS 77102268 77102366 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "4"; exon_id "ENSE00003542338.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL exon 77104265 77104354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "5"; exon_id "ENSE00003582657.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL CDS 77104265 77104354 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "5"; exon_id "ENSE00003582657.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL exon 77105428 77105572 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "6"; exon_id "ENSE00003566056.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL CDS 77105428 77105572 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "6"; exon_id "ENSE00003566056.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL exon 77105775 77105839 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "7"; exon_id "ENSE00003512812.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL CDS 77105775 77105839 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "7"; exon_id "ENSE00003512812.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL exon 77107770 77107925 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "8"; exon_id "ENSE00003522135.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL CDS 77107770 77107925 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "8"; exon_id "ENSE00003522135.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL exon 77108132 77108196 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "9"; exon_id "ENSE00003676250.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL CDS 77108132 77108196 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "9"; exon_id "ENSE00003676250.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL exon 77119354 77119462 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "10"; exon_id "ENSE00003566891.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL CDS 77119354 77119462 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "10"; exon_id "ENSE00003566891.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL exon 77132825 77132882 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "11"; exon_id "ENSE00003588591.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL CDS 77132825 77132882 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "11"; exon_id "ENSE00003588591.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL exon 77133898 77134101 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "12"; exon_id "ENSE00003677118.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL CDS 77133898 77134101 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "12"; exon_id "ENSE00003677118.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL exon 77137247 77137628 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "13"; exon_id "ENSE00002239293.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL CDS 77137247 77137380 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "13"; exon_id "ENSE00002239293.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL stop_codon 77137381 77137383 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "13"; exon_id "ENSE00002239293.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL exon 77137760 77138141 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; exon_number "14"; exon_id "ENSE00002264600.1"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL UTR 77090080 77090104 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL UTR 77096628 77096636 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL UTR 77137381 77137628 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; protein_id "ENSP00000442015.1"; +chr18 ENSEMBL UTR 77137760 77138141 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000543761.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATP9B-202"; level "3"; havana_gene "OTTHUMG00000132898.4"; tag "basic"; protein_id "ENSP00000442015.1"; +chr18 HAVANA transcript 77096626 77105486 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-023"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450490.1"; protein_id "ENSP00000465928.1"; +chr18 HAVANA exon 77096626 77096711 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-023"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450490.1"; exon_number "1"; exon_id "ENSE00002916101.1"; protein_id "ENSP00000465928.1"; +chr18 HAVANA CDS 77096626 77096711 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-023"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450490.1"; exon_number "1"; exon_id "ENSE00002916101.1"; protein_id "ENSP00000465928.1"; +chr18 HAVANA exon 77097317 77097449 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-023"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450490.1"; exon_number "2"; exon_id "ENSE00002963605.1"; protein_id "ENSP00000465928.1"; +chr18 HAVANA CDS 77097317 77097449 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-023"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450490.1"; exon_number "2"; exon_id "ENSE00002963605.1"; protein_id "ENSP00000465928.1"; +chr18 HAVANA exon 77102268 77102366 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-023"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450490.1"; exon_number "3"; exon_id "ENSE00003493055.1"; protein_id "ENSP00000465928.1"; +chr18 HAVANA CDS 77102268 77102287 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-023"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450490.1"; exon_number "3"; exon_id "ENSE00003493055.1"; protein_id "ENSP00000465928.1"; +chr18 HAVANA stop_codon 77102288 77102290 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-023"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450490.1"; exon_number "3"; exon_id "ENSE00003493055.1"; protein_id "ENSP00000465928.1"; +chr18 HAVANA exon 77104265 77104354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-023"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450490.1"; exon_number "4"; exon_id "ENSE00003649303.1"; protein_id "ENSP00000465928.1"; +chr18 HAVANA exon 77105428 77105486 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-023"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450490.1"; exon_number "5"; exon_id "ENSE00002763592.1"; protein_id "ENSP00000465928.1"; +chr18 HAVANA UTR 77102288 77102366 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-023"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450490.1"; protein_id "ENSP00000465928.1"; +chr18 HAVANA UTR 77104265 77104354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-023"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450490.1"; protein_id "ENSP00000465928.1"; +chr18 HAVANA UTR 77105428 77105486 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588895.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-023"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450490.1"; protein_id "ENSP00000465928.1"; +chr18 HAVANA transcript 77104139 77105840 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586774.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-024"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450491.1"; +chr18 HAVANA exon 77104139 77104354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586774.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-024"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450491.1"; exon_number "1"; exon_id "ENSE00002769840.1"; +chr18 HAVANA exon 77105428 77105572 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586774.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-024"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450491.1"; exon_number "2"; exon_id "ENSE00003647546.1"; +chr18 HAVANA exon 77105775 77105840 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000586774.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-024"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450491.1"; exon_number "3"; exon_id "ENSE00002942573.1"; +chr18 HAVANA transcript 77104328 77138266 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA exon 77104328 77104354 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "1"; exon_id "ENSE00002950449.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA CDS 77104328 77104354 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "1"; exon_id "ENSE00002950449.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA exon 77105428 77105572 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "2"; exon_id "ENSE00003566056.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA CDS 77105428 77105572 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "2"; exon_id "ENSE00003566056.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA exon 77105775 77105839 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "3"; exon_id "ENSE00003512812.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA CDS 77105775 77105839 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "3"; exon_id "ENSE00003512812.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA exon 77107770 77107925 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "4"; exon_id "ENSE00003522135.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA CDS 77107770 77107925 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "4"; exon_id "ENSE00003522135.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA exon 77119354 77119462 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "5"; exon_id "ENSE00003523882.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA CDS 77119354 77119462 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "5"; exon_id "ENSE00003523882.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA exon 77132825 77132882 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "6"; exon_id "ENSE00003691906.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA CDS 77132825 77132882 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "6"; exon_id "ENSE00003691906.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA exon 77133898 77134101 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "7"; exon_id "ENSE00003506929.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA CDS 77133898 77133937 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "7"; exon_id "ENSE00003506929.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA stop_codon 77133938 77133940 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "7"; exon_id "ENSE00003506929.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA exon 77137247 77138266 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; exon_number "8"; exon_id "ENSE00002930244.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA UTR 77133938 77134101 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA UTR 77137247 77138266 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000590477.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-009"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450492.1"; protein_id "ENSP00000467935.1"; +chr18 HAVANA transcript 77107808 77134197 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589951.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-025"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450493.1"; +chr18 HAVANA exon 77107808 77107925 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589951.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-025"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450493.1"; exon_number "1"; exon_id "ENSE00002772448.1"; +chr18 HAVANA exon 77119354 77119462 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589951.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-025"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450493.1"; exon_number "2"; exon_id "ENSE00003480966.1"; +chr18 HAVANA exon 77132825 77132882 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589951.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-025"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450493.1"; exon_number "3"; exon_id "ENSE00003636664.1"; +chr18 HAVANA exon 77133898 77134197 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000589951.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-025"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450493.1"; exon_number "4"; exon_id "ENSE00002359067.1"; +chr18 HAVANA transcript 77107907 77138142 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA exon 77107907 77107925 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "1"; exon_id "ENSE00002919794.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA CDS 77107907 77107925 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "1"; exon_id "ENSE00002919794.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA exon 77108132 77108196 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "2"; exon_id "ENSE00003676250.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA CDS 77108132 77108196 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "2"; exon_id "ENSE00003676250.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA exon 77119354 77119462 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "3"; exon_id "ENSE00003566891.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA CDS 77119354 77119462 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "3"; exon_id "ENSE00003566891.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA exon 77132559 77132685 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "4"; exon_id "ENSE00002843071.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA CDS 77132559 77132685 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "4"; exon_id "ENSE00002843071.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA exon 77132825 77132882 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "5"; exon_id "ENSE00003691906.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA CDS 77132825 77132882 . + 2 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "5"; exon_id "ENSE00003691906.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA exon 77133898 77134101 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "6"; exon_id "ENSE00003506929.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA CDS 77133898 77133937 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "6"; exon_id "ENSE00003506929.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA stop_codon 77133938 77133940 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "6"; exon_id "ENSE00003506929.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA exon 77135394 77135426 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "7"; exon_id "ENSE00003545879.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA exon 77137247 77138142 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; exon_number "8"; exon_id "ENSE00002971780.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA UTR 77133938 77134101 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA UTR 77135394 77135426 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA UTR 77137247 77138142 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000588921.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-010"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450494.1"; protein_id "ENSP00000465269.1"; +chr18 HAVANA transcript 77119396 77134027 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587919.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-026"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450495.1"; protein_id "ENSP00000467657.1"; +chr18 HAVANA exon 77119396 77119462 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587919.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-026"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450495.1"; exon_number "1"; exon_id "ENSE00002815377.1"; protein_id "ENSP00000467657.1"; +chr18 HAVANA CDS 77119396 77119462 . + 1 gene_id "ENSG00000166377.15"; transcript_id "ENST00000587919.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-026"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450495.1"; exon_number "1"; exon_id "ENSE00002815377.1"; protein_id "ENSP00000467657.1"; +chr18 HAVANA exon 77121739 77121992 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587919.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-026"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450495.1"; exon_number "2"; exon_id "ENSE00002894789.1"; protein_id "ENSP00000467657.1"; +chr18 HAVANA CDS 77121739 77121780 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000587919.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-026"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450495.1"; exon_number "2"; exon_id "ENSE00002894789.1"; protein_id "ENSP00000467657.1"; +chr18 HAVANA stop_codon 77121781 77121783 . + 0 gene_id "ENSG00000166377.15"; transcript_id "ENST00000587919.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-026"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450495.1"; exon_number "2"; exon_id "ENSE00002894789.1"; protein_id "ENSP00000467657.1"; +chr18 HAVANA exon 77132825 77132882 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587919.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-026"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450495.1"; exon_number "3"; exon_id "ENSE00003636664.1"; protein_id "ENSP00000467657.1"; +chr18 HAVANA exon 77133898 77134027 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587919.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-026"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450495.1"; exon_number "4"; exon_id "ENSE00002762216.1"; protein_id "ENSP00000467657.1"; +chr18 HAVANA UTR 77121781 77121992 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587919.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-026"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450495.1"; protein_id "ENSP00000467657.1"; +chr18 HAVANA UTR 77132825 77132882 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587919.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-026"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450495.1"; protein_id "ENSP00000467657.1"; +chr18 HAVANA UTR 77133898 77134027 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587919.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATP9B-026"; level "2"; havana_gene "OTTHUMG00000132898.4"; tag "cds_start_NF"; havana_transcript "OTTHUMT00000450495.1"; protein_id "ENSP00000467657.1"; +chr18 HAVANA transcript 77132390 77134275 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587410.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-002"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450496.1"; +chr18 HAVANA exon 77132390 77132882 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587410.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-002"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450496.1"; exon_number "1"; exon_id "ENSE00002923361.1"; +chr18 HAVANA exon 77133898 77134275 . + . gene_id "ENSG00000166377.15"; transcript_id "ENST00000587410.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATP9B"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ATP9B-002"; level "2"; havana_gene "OTTHUMG00000132898.4"; havana_transcript "OTTHUMT00000450496.1"; exon_number "2"; exon_id "ENSE00002807579.1"; +chr18 HAVANA gene 76877207 76877920 . + . gene_id "ENSG00000267655.1"; transcript_id "ENSG00000267655.1"; gene_type "sense_intronic"; gene_status "NOVEL"; gene_name "CTD-2286N8.2"; transcript_type "sense_intronic"; transcript_status "NOVEL"; transcript_name "CTD-2286N8.2"; level "2"; havana_gene "OTTHUMG00000180261.1"; +chr18 HAVANA transcript 76877207 76877920 . + . gene_id "ENSG00000267655.1"; transcript_id "ENST00000586389.1"; gene_type "sense_intronic"; gene_status "NOVEL"; gene_name "CTD-2286N8.2"; transcript_type "sense_intronic"; transcript_status "KNOWN"; transcript_name "CTD-2286N8.2-001"; level "2"; havana_gene "OTTHUMG00000180261.1"; tag "basic"; havana_transcript "OTTHUMT00000450498.1"; +chr18 HAVANA exon 76877207 76877920 . + . gene_id "ENSG00000267655.1"; transcript_id "ENST00000586389.1"; gene_type "sense_intronic"; gene_status "NOVEL"; gene_name "CTD-2286N8.2"; transcript_type "sense_intronic"; transcript_status "KNOWN"; transcript_name "CTD-2286N8.2-001"; level "2"; havana_gene "OTTHUMG00000180261.1"; tag "basic"; havana_transcript "OTTHUMT00000450498.1"; exon_number "1"; exon_id "ENSE00002867564.1"; diff --git a/man/FormatTrack.Rd b/man/FormatTrack.Rd new file mode 100644 index 0000000..6d70ec9 --- /dev/null +++ b/man/FormatTrack.Rd @@ -0,0 +1,36 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/FormatInput.R +\name{FormatTrack} +\alias{FormatTrack} +\title{Prepare Input for Creating Coverage Plot.} +\usage{ +FormatTrack( + data, + region = "chr14:21,677,306-21,737,601", + gtf.gr = NULL, + gene.name = "HNRNPC", + gene.name.type = c("gene_name", "gene_id"), + extend = 2000 +) +} +\arguments{ +\item{data}{Track dataframe loaded by \code{\link{LoadTrackFile}}.} + +\item{region}{Region used to create coverage plot, eg: chr14:21,677,306-21,737,601 or chr14:21,677,306. +Default: NULL.} + +\item{gtf.gr}{Granges object of GTF, created with \code{\link{import.gff}}. Default: NULL.} + +\item{gene.name}{The name of gene. Default: HNRNPC.} + +\item{gene.name.type}{Gene name type (filed of \code{gtf.gr}), chosen from gene_name and gene_id. +Default: gene_name.} + +\item{extend}{Extend length of \code{region}. Default: 2000.} +} +\value{ +A dataframe. +} +\description{ +Prepare Input for Creating Coverage Plot. +} diff --git a/man/LoadTrackFile.Rd b/man/LoadTrackFile.Rd new file mode 100644 index 0000000..85c54e4 --- /dev/null +++ b/man/LoadTrackFile.Rd @@ -0,0 +1,46 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/LoadTrack.R +\name{LoadTrackFile} +\alias{LoadTrackFile} +\title{Load Track File to Dataframe.} +\usage{ +LoadTrackFile( + track.file, + track.folder = NULL, + format = c("bam", "wig", "bw", "bedgraph"), + meta.info = NULL, + meta.file = "", + bamcoverage.path = NULL, + norm.method = c("RPKM", "CPM", "BPM", "RPGC", "None"), + bin.size = 10, + bc.extra.para = NULL +) +} +\arguments{ +\item{track.file}{Track file, when \code{track.folder} is not NULL, determined by \code{track.folder}.} + +\item{track.folder}{Track file folder. Default: NULL.} + +\item{format}{Track file format, chosen from bam, wig, bw(bigwig), bedgraph(bedGraph).} + +\item{meta.info}{Track file metadata. The columns should be: SampleName (\code{track.file} without suffix), +Type (sample with replicates information), Group (sample group). when \code{meta.file} is not NULL, +determined by \code{meta.file}.Default: NULL.} + +\item{meta.file}{File contains track file metadata. Default: "".} + +\item{bamcoverage.path}{The path to \code{bamCoverage}, used when \code{format} is bam. Default: NULL (auto-detect).} + +\item{norm.method}{Methods to normalize the number of reads per bin, chosen from "RPKM", "CPM", "BPM", "RPGC", "None". +Default: RPKM.} + +\item{bin.size}{Size of the bins, in bases. Default: 50.} + +\item{bc.extra.para}{Extra parameters for \code{bamCoverage}, eg: "--effectiveGenomeSize 2700000000 --ignoreForNormalization chrX"} +} +\value{ +A dataframe. +} +\description{ +Load Track File to Dataframe. +} diff --git a/man/figures/README-basic_coverage-1.png b/man/figures/README-basic_coverage-1.png new file mode 100644 index 0000000..96fd179 Binary files /dev/null and b/man/figures/README-basic_coverage-1.png differ diff --git a/man/figures/README-basic_coverage_2-1.png b/man/figures/README-basic_coverage_2-1.png new file mode 100644 index 0000000..235c9c7 Binary files /dev/null and b/man/figures/README-basic_coverage_2-1.png differ diff --git a/man/figures/README-basic_coverage_chip-1.png b/man/figures/README-basic_coverage_chip-1.png new file mode 100644 index 0000000..f2dacd3 Binary files /dev/null and b/man/figures/README-basic_coverage_chip-1.png differ diff --git a/man/figures/README-gene_coverage-1.png b/man/figures/README-gene_coverage-1.png new file mode 100644 index 0000000..d376378 Binary files /dev/null and b/man/figures/README-gene_coverage-1.png differ diff --git a/man/figures/README-ideogram_coverage_1-1.png b/man/figures/README-ideogram_coverage_1-1.png new file mode 100644 index 0000000..8275d7f Binary files /dev/null and b/man/figures/README-ideogram_coverage_1-1.png differ diff --git a/man/figures/README-ideogram_coverage_2-1.png b/man/figures/README-ideogram_coverage_2-1.png new file mode 100644 index 0000000..4deda1f Binary files /dev/null and b/man/figures/README-ideogram_coverage_2-1.png differ diff --git a/man/figures/README-peak_coverage-1.png b/man/figures/README-peak_coverage-1.png new file mode 100644 index 0000000..6347e3c Binary files /dev/null and b/man/figures/README-peak_coverage-1.png differ diff --git a/man/figures/README-transcript_coverage-1.png b/man/figures/README-transcript_coverage-1.png new file mode 100644 index 0000000..b469ae3 Binary files /dev/null and b/man/figures/README-transcript_coverage-1.png differ diff --git a/man/figures/ggcoverage.png b/man/figures/ggcoverage.png new file mode 100644 index 0000000..bb5f6b0 Binary files /dev/null and b/man/figures/ggcoverage.png differ diff --git a/man/geom_coverage.Rd b/man/geom_coverage.Rd new file mode 100644 index 0000000..a923948 --- /dev/null +++ b/man/geom_coverage.Rd @@ -0,0 +1,59 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/geom_coverage.R +\name{geom_coverage} +\alias{geom_coverage} +\title{Layer for Coverage Plot.} +\usage{ +geom_coverage( + data, + mapping = NULL, + color = NULL, + facet.key = "Type", + facet.order = NULL, + facet.color = NULL, + group.key = "Group", + range.size = 3, + range.position = c("in", "out"), + mark.region = NULL, + mark.color = "grey", + mark.alpha = 0.5, + show.mark.label = TRUE, + mark.label.size = 4 +) +} +\arguments{ +\item{data}{Track prepared by \code{\link{FormatTrack}}.} + +\item{mapping}{Set of aesthetic mappings created by \code{aes} or \code{aes_}. Default: NULL.} + +\item{color}{Track color. Default: NULL (select automatically).} + +\item{facet.key}{Sample type key to create coverage plot. Default: Type.} + +\item{facet.order}{The order of coverage plot. Default: NULL.} + +\item{facet.color}{The color of sample text. Default: NULL (select automatically).} + +\item{group.key}{Group of samples. Default: NULL.} + +\item{range.size}{The label size of range text, used when \code{range.position} is in. Default: 3.} + +\item{range.position}{The position of y axis range, chosen from in (move y axis in the plot) and +out (normal y axis). Default: in.} + +\item{mark.region}{Mark region on the plot. Default: NULL.} + +\item{mark.color}{The color of marked region. Default: "grey".} + +\item{mark.alpha}{The alpha of marked region. Default: 0.5.} + +\item{show.mark.label}{Logical value, whether to show mark label (use label column in \code{mark.region}). Default: TRUE.} + +\item{mark.label.size}{The label size of mark label. Default: 4.} +} +\value{ +Layers of ggplot2. +} +\description{ +Layer for Coverage Plot. +} diff --git a/man/geom_gene.Rd b/man/geom_gene.Rd new file mode 100644 index 0000000..586cc6c --- /dev/null +++ b/man/geom_gene.Rd @@ -0,0 +1,65 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/geom_gene.R +\name{geom_gene} +\alias{geom_gene} +\title{Add Gene Annotation to Coverage Plot.} +\usage{ +geom_gene( + gtf.gr, + overlap.gene.gap = 0.1, + gene.size = 1, + utr.size = 2, + exon.size = 4, + arrow.size = 1, + color.by = "strand", + fill.color = c(`-` = "darkblue", `+` = "darkgreen"), + show.utr = TRUE, + arrow.gap = NULL, + arrow.num = 50, + arrow.length = 0.06, + label.size = 3, + label.vjust = 2, + plot.space = 0.1, + plot.height = 0.2 +) +} +\arguments{ +\item{gtf.gr}{Granges object of GTF, created with \code{\link{import.gff}}. Default: NULL.} + +\item{overlap.gene.gap}{The gap between gene groups. Default: 0.1.} + +\item{gene.size}{The line size of gene. Default: 1.} + +\item{utr.size}{The line size of UTR. Default: 2.} + +\item{exon.size}{The line size of exon. Default: 4.} + +\item{arrow.size}{The line size of arrow. Default: 1.} + +\item{color.by}{Color the line by. Default: strand.} + +\item{fill.color}{Color used for \code{color.by}. +Default: darkblue for - (minus strand), darkgreen for + (plus strand).} + +\item{show.utr}{Logical value, whether to show UTR. Default: TRUE.} + +\item{arrow.gap}{The gap distance between arrow. Default: NULL.} + +\item{arrow.num}{Total arrow num of whole region. Default: 50.} + +\item{arrow.length}{The length of arrow. Default: 0.06.} + +\item{label.size}{The size of gene label. Default: 3.} + +\item{label.vjust}{The vjust of gene label. Default: 2.} + +\item{plot.space}{Top and bottom margin. Default: 0.1.} + +\item{plot.height}{The relative height of gene annotation to coverage plot. Default: 0.2.} +} +\value{ +Plot. +} +\description{ +Add Gene Annotation to Coverage Plot. +} diff --git a/man/geom_ideogram.Rd b/man/geom_ideogram.Rd new file mode 100644 index 0000000..5294b55 --- /dev/null +++ b/man/geom_ideogram.Rd @@ -0,0 +1,47 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/geom_ideogram.R +\name{geom_ideogram} +\alias{geom_ideogram} +\title{Add Ideogram Annotation to Coverage Plot.} +\usage{ +geom_ideogram( + genome = "hg19", + mark.color = "red", + mark.alpha = 0.7, + mark.line.size = 1, + add.shadow = TRUE, + shadow.color = "grey", + shadow.alpha = 0.7, + shadow.line.size = 1, + plot.space = 0.1, + plot.height = 0.1 +) +} +\arguments{ +\item{genome}{Single specie names, which must be one of the result from \code{ucscGenomes()$db}. +If missing, will invoke a menu for users to choose from. Default: hg19.} + +\item{mark.color}{The color to mark plot region on ideogram. Default: "red".} + +\item{mark.alpha}{The alpha to mark plot region on ideogram. Default: 0.7.} + +\item{mark.line.size}{The line size to mark plot region on ideogram. Default: 1.} + +\item{add.shadow}{Logical value, whether to add shadow polygon. Default: TRUE.} + +\item{shadow.color}{The color to fill shadow polygon. Default: grey.} + +\item{shadow.alpha}{The alpha of shadow polygon. Default: 0.7.} + +\item{shadow.line.size}{The line size of shadow polygon. Default: 1.} + +\item{plot.space}{Top and bottom margin. Default: 0.1.} + +\item{plot.height}{The relative height of gene annotation to coverage plot. Default: 0.2.} +} +\value{ +Plot. +} +\description{ +Add Ideogram Annotation to Coverage Plot. +} diff --git a/man/geom_peak.Rd b/man/geom_peak.Rd new file mode 100644 index 0000000..ce63ed6 --- /dev/null +++ b/man/geom_peak.Rd @@ -0,0 +1,31 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/geom_peak.R +\name{geom_peak} +\alias{geom_peak} +\title{Add Peak Annotation to Coverage Plot.} +\usage{ +geom_peak( + bed.file, + peak.color = "black", + peak.size = 5, + plot.space = 0.1, + plot.height = 0.1 +) +} +\arguments{ +\item{bed.file}{The path to bed file.} + +\item{peak.color}{Peak color. Default: black.} + +\item{peak.size}{The line size of peak. Default: 5.} + +\item{plot.space}{Top and bottom margin. Default: 0.1.} + +\item{plot.height}{The relative height of gene annotation to coverage plot. Default: 0.2.} +} +\value{ +Plot. +} +\description{ +Add Peak Annotation to Coverage Plot. +} diff --git a/man/geom_transcript.Rd b/man/geom_transcript.Rd new file mode 100644 index 0000000..47fc946 --- /dev/null +++ b/man/geom_transcript.Rd @@ -0,0 +1,65 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/geom_transcript.R +\name{geom_transcript} +\alias{geom_transcript} +\title{Add Transcript Annotation to Coverage Plot.} +\usage{ +geom_transcript( + gtf.gr, + gene.name = "HNRNPC", + overlap.tx.gap = 0.1, + tx.size = 1, + utr.size = 2, + exon.size = 4, + arrow.size = 1, + color.by = "strand", + fill.color = c(`-` = "darkblue", `+` = "darkgreen"), + arrow.gap = NULL, + arrow.num = 50, + arrow.length = 0.06, + label.size = 3, + label.vjust = 2, + plot.space = 0.1, + plot.height = 1 +) +} +\arguments{ +\item{gtf.gr}{Granges object of GTF, created with \code{\link{import.gff}}. Default: NULL.} + +\item{gene.name}{Gene name of all transcripts. Default: HNRNPC.} + +\item{overlap.tx.gap}{The gap between transcript groups. Default: 0.1.} + +\item{tx.size}{The line size of transcript. Default: 1.} + +\item{utr.size}{The line size of UTR. Default: 2.} + +\item{exon.size}{The line size of exon. Default: 4.} + +\item{arrow.size}{The line size of arrow. Default: 1.} + +\item{color.by}{Color the line by. Default: strand.} + +\item{fill.color}{Color used for \code{color.by}. +Default: darkblue for - (minus strand), darkgreen for + (plus strand).} + +\item{arrow.gap}{The gap distance between arrow. Default: NULL.} + +\item{arrow.num}{Total arrow num of whole region. Default: 50.} + +\item{arrow.length}{The length of arrow. Default: 0.06.} + +\item{label.size}{The size of gene label. Default: 3.} + +\item{label.vjust}{The vjust of gene label. Default: 2.} + +\item{plot.space}{Top and bottom margin. Default: 0.1.} + +\item{plot.height}{The relative height of gene annotation to coverage plot. Default: 0.2.} +} +\value{ +Plot. +} +\description{ +Add Transcript Annotation to Coverage Plot. +} diff --git a/man/ggcoverage.Rd b/man/ggcoverage.Rd new file mode 100644 index 0000000..e4e1f94 --- /dev/null +++ b/man/ggcoverage.Rd @@ -0,0 +1,79 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/ggcoverage.R +\name{ggcoverage} +\alias{ggcoverage} +\title{Create Coverage Plot.} +\usage{ +ggcoverage( + data, + region = "chr14:21,677,306-21,737,601", + gtf.gr = NULL, + extend = 2000, + gene.name = "HNRNPC", + gene.name.type = c("gene_name", "gene_id"), + mapping = NULL, + color = NULL, + facet.key = "Type", + facet.order = NULL, + facet.color = NULL, + group.key = "Group", + range.size = 3, + range.position = c("in", "out"), + plot.space = 0.2, + mark.region = NULL, + mark.color = "grey", + mark.alpha = 0.5, + show.mark.label = TRUE, + mark.label.size = 4 +) +} +\arguments{ +\item{data}{Coverage dataframe loaded by \code{\link{LoadTrackFile}}.} + +\item{region}{Region used to create coverage plot, eg: chr14:21,677,306-21,737,601 or chr14:21,677,306. +Default: NULL.} + +\item{gtf.gr}{Granges object of GTF, created with \code{\link{import.gff}}. Default: NULL.} + +\item{extend}{Extend length of \code{region}. Default: 2000.} + +\item{gene.name}{The name of gene. Default: HNRNPC.} + +\item{gene.name.type}{Gene name type (filed of \code{gtf.gr}), chosen from gene_name and gene_id. +Default: gene_name.} + +\item{mapping}{Set of aesthetic mappings created by \code{aes} or \code{aes_}. Default: NULL.} + +\item{color}{Track color. Default: NULL (select automatically).} + +\item{facet.key}{Sample type key to create Coverage plot. Default: Type.} + +\item{facet.order}{The order of Coverage plot. Default: NULL.} + +\item{facet.color}{The color of sample text. Default: NULL (select automatically).} + +\item{group.key}{Group of samples. Default: NULL.} + +\item{range.size}{The label size of range text, used when \code{range.position} is in. Default: 3.} + +\item{range.position}{The position of y axis range, chosen from in (move y axis in the plot) and +out (normal y axis). Default: in.} + +\item{plot.space}{The space between every facet. Default: 0.2.} + +\item{mark.region}{Mark region on the plot. Default: NULL.} + +\item{mark.color}{The color of marked region. Default: "grey".} + +\item{mark.alpha}{The alpha of marked region. Default: 0.5.} + +\item{show.mark.label}{Logical value, whether to show mark label (use label column in \code{mark.region}). Default: TRUE.} + +\item{mark.label.size}{The label size of mark label. Default: 4.} +} +\value{ +A ggplot2 object. +} +\description{ +Create Coverage Plot. +} diff --git a/man/theme_coverage.Rd b/man/theme_coverage.Rd new file mode 100644 index 0000000..5504e91 --- /dev/null +++ b/man/theme_coverage.Rd @@ -0,0 +1,19 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/theme_ggcoverage.R +\name{theme_coverage} +\alias{theme_coverage} +\title{Theme for geom_coverage.} +\usage{ +theme_coverage(space = 0.2, x.range) +} +\arguments{ +\item{space}{The space between facets. Default: 0.2.} + +\item{x.range}{X axis ranges.} +} +\value{ +List of layers. +} +\description{ +Theme for geom_coverage. +} diff --git a/man/theme_coverage2.Rd b/man/theme_coverage2.Rd new file mode 100644 index 0000000..0d6bddd --- /dev/null +++ b/man/theme_coverage2.Rd @@ -0,0 +1,19 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/theme_ggcoverage.R +\name{theme_coverage2} +\alias{theme_coverage2} +\title{Theme for geom_coverage.} +\usage{ +theme_coverage2(space = 0.2, x.range) +} +\arguments{ +\item{space}{The space between facets. Default: 0.2.} + +\item{x.range}{X axis ranges.} +} +\value{ +List of layers. +} +\description{ +Theme for geom_coverage. +} diff --git a/man/theme_gene.Rd b/man/theme_gene.Rd new file mode 100644 index 0000000..42b9124 --- /dev/null +++ b/man/theme_gene.Rd @@ -0,0 +1,25 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/theme_ggcoverage.R +\name{theme_gene} +\alias{theme_gene} +\title{Theme for geom_gene.} +\usage{ +theme_gene(overlap.gene.gap, group.num, fill.color, x.range, margin.len) +} +\arguments{ +\item{overlap.gene.gap}{The gap between gene groups.} + +\item{group.num}{The number of groups.} + +\item{fill.color}{Fill color.} + +\item{x.range}{X axis ranges.} + +\item{margin.len}{Top and bottom margin.} +} +\value{ +List of layers. +} +\description{ +Theme for geom_gene. +} diff --git a/man/theme_ideogram.Rd b/man/theme_ideogram.Rd new file mode 100644 index 0000000..2e5261a --- /dev/null +++ b/man/theme_ideogram.Rd @@ -0,0 +1,14 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/theme_ggcoverage.R +\name{theme_ideogram} +\alias{theme_ideogram} +\title{Theme for geom_ideogram.} +\usage{ +theme_ideogram() +} +\value{ +List of layers. +} +\description{ +Theme for geom_ideogram. +} diff --git a/man/theme_peak.Rd b/man/theme_peak.Rd new file mode 100644 index 0000000..1143678 --- /dev/null +++ b/man/theme_peak.Rd @@ -0,0 +1,19 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/theme_ggcoverage.R +\name{theme_peak} +\alias{theme_peak} +\title{Theme for geom_peak.} +\usage{ +theme_peak(margin.len, x.range) +} +\arguments{ +\item{margin.len}{Top and bottom margin.} + +\item{x.range}{X axis ranges.} +} +\value{ +List of layers. +} +\description{ +Theme for geom_peak. +} diff --git a/man/theme_transcript.Rd b/man/theme_transcript.Rd new file mode 100644 index 0000000..432fd06 --- /dev/null +++ b/man/theme_transcript.Rd @@ -0,0 +1,25 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/theme_ggcoverage.R +\name{theme_transcript} +\alias{theme_transcript} +\title{Theme for geom_transcript.} +\usage{ +theme_transcript(overlap.tx.gap, group.num, fill.color, x.range, margin.len) +} +\arguments{ +\item{overlap.tx.gap}{The gap between transcript groups.} + +\item{group.num}{The number of groups.} + +\item{fill.color}{Fill color.} + +\item{x.range}{X axis ranges.} + +\item{margin.len}{Top and bottom margin.} +} +\value{ +List of layers. +} +\description{ +Theme for geom_transcript. +} diff --git a/vignettes/.gitignore b/vignettes/.gitignore new file mode 100644 index 0000000..097b241 --- /dev/null +++ b/vignettes/.gitignore @@ -0,0 +1,2 @@ +*.html +*.R diff --git a/vignettes/ggcoverage.Rmd b/vignettes/ggcoverage.Rmd new file mode 100644 index 0000000..e1bac2b --- /dev/null +++ b/vignettes/ggcoverage.Rmd @@ -0,0 +1,243 @@ +--- +title: > + ggcoverage User Guide +author: +- name: Yabing Song + affiliation: + - &id1 School of Life Sciences, Tsinghua University + email: songyb18@mails.tsinghua.edu.cn +date: "`r BiocStyle::doc_date()`" +package: "`r BiocStyle::pkg_ver('ggcoverage')`" +abstract: > + The goal of `r Biocpkg("ggcoverage")` is to simplify the process of visualizing genomic coverage. It contains functions to load genomic data with bam/bigwig/bedgraph file format, create genomic coverage plot, add various annotation to the coverage plot, including gene annotaion, transcription annotion, ideogram annotation and peak annotation. +output: + BiocStyle::html_document: + toc_depth: 4 + toc_float: true +fig_caption: TRUE +vignette: > + %\VignetteIndexEntry{ggcoverage} + %\VignetteEngine{knitr::rmarkdown} + %\VignetteEncoding{UTF-8} +--- + +```{r style, echo = FALSE, results = 'asis'} +BiocStyle::markdown() +``` + +```{r setup, echo=FALSE, warning=FALSE} +library(knitr) +htmltools::tagList(rmarkdown::html_dependency_font_awesome()) + +# set dpi +knitr::opts_chunk$set( + collapse = TRUE, + comment = "#>", + dpi=60 +) +``` + +# Getting started + +`r Biocpkg("ggcoverage")` is an R package distributed as part of the [Bioconductor](http://bioconductor.org) project and [CRAN](https://cran.r-project.org/). +To install the package, start R and enter: + +```{r install, eval=FALSE} +# install via Bioconductor +if (!requireNamespace("BiocManager", quietly=TRUE)) + install.packages("BiocManager") +BiocManager::install("ggcoverage") + +# install via CRAN +install.package("ggcoverage") + +# install via Github +# install.package("remotes") #In case you have not installed it. +remotes::install_github("showteeth/ggcoverage") +``` + +Once `r Rpackage("ggcoverage")` is installed, it can be loaded by the following command. + +```{r library, message=FALSE, warning=FALSE} +library("rtracklayer") +library("ggcoverage") +``` + +# Introduction + + + The goal of `ggcoverage` is simplify the process of visualizing genomic coverage. It contains three main parts: + +* **Load the data**: `ggcoverage` can load bam, bigwig (.bw), bedgraph file from various NGS data, including RNA-seq, ChIP-seq, ATAC-seq, et al. +* **Create genomic coverage plot** +* **Add annotaions**: `ggcoverage` supports four different annotaions: + * **gene annotaion**: Visualize genomic coverage across whole gene + * **transcription annotion**: Visualize genomic coverage across different transcripts + * **ideogram annotation**: Visualize the region showing on whole chromosome + * **peak annotation**: Visualize genomic coverage and peak identified. + +`ggcoverage` utilizes `ggplot2` plotting system, so its usage is ggplot2-style! + +------------- + +# RNA-seq data +## Load the data +The RNA-seq data used here are from [Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells](https://bioconductor.org/packages/release/data/experiment/html/RNAseqData.HNRNPC.bam.chr14.html), we select four sample to use as example: ERR127307_chr14, ERR127306_chr14, ERR127303_chr14, ERR127302_chr14, and all bam files are converted to bigwig file with [deeptools](https://deeptools.readthedocs.io/en/develop/). + +Load metadata: +```{r load_metadata} +# load metadata +meta.file <- system.file("extdata", "RNA-seq", "meta_info.csv", package = "ggcoverage") +sample.meta = read.csv(meta.file) +sample.meta +``` + +Load track files: +```{r load_track} +# track folder +track.folder = system.file("extdata", "RNA-seq", package = "ggcoverage") +# load bigwig file +track.df = LoadTrackFile(track.folder = track.folder, format = "bw", + meta.info = sample.meta) +# check data +head(track.df) +``` + +Prepare mark region: +```{r prepare_mark} +# create mark region +mark.region=data.frame(start=c(21678900,21732001,21737590), + end=c(21679900,21732400,21737650), + label=c("M1", "M2", "M3")) +# check data +mark.region +``` + +Load GTF file: +```{r load_gtf} +gtf.file = system.file("extdata", "used_hg19.gtf", package = "ggcoverage") +gtf.gr = rtracklayer::import.gff(con = gtf.file, format = 'gtf') +``` + +------------- + +## Basic coverage +```{r basic_coverage, warning=FALSE, fig.height = 6, fig.width = 12, fig.align = "center"} +basic.coverage = ggcoverage(data = track.df, color = "auto", + mark.region = mark.region, range.position = "out") +basic.coverage +``` + +You can also change Y axis style: +```{r basic_coverage_2, warning=FALSE, fig.height = 6, fig.width = 12, fig.align = "center"} +basic.coverage = ggcoverage(data = track.df, color = "auto", + mark.region = mark.region, range.position = "in") +basic.coverage +``` + +------------- + +## Add gene annotation +```{r gene_coverage, warning=FALSE, fig.height = 8, fig.width = 12, fig.align = "center"} +basic.coverage + + geom_gene(gtf.gr=gtf.gr) +``` + +------------- + +## Add transcript annotation +```{r transcript_coverage, warning=FALSE, fig.height = 12, fig.width = 12, fig.align = "center"} +basic.coverage + + geom_transcript(gtf.gr=gtf.gr,label.vjust = 1.5) +``` + +------------- + +## Add ideogram +```{r ideogram_coverage_1, warning=FALSE, fig.height = 10, fig.width = 12, fig.align = "center"} +basic.coverage + + geom_gene(gtf.gr=gtf.gr) + + geom_ideogram(genome = "hg19",plot.space = 0) +``` + +```{r ideogram_coverage_2, warning=FALSE, fig.height = 14, fig.width = 12, fig.align = "center"} +basic.coverage + + geom_transcript(gtf.gr=gtf.gr,label.vjust = 1.5) + + geom_ideogram(genome = "hg19",plot.space = 0) +``` + +------------- + +# ChIP-seq data +The ChIP-seq data used here are from [DiffBind](https://bioconductor.org/packages/release/bioc/html/DiffBind.html), I select four sample to use as example: Chr18_MCF7_input, Chr18_MCF7_ER_1, Chr18_MCF7_ER_3, Chr18_MCF7_ER_2, and all bam files are converted to bigwig file with [deeptools](https://deeptools.readthedocs.io/en/develop/). + +Create metadata: +```{r load_metadata_chip} +# load metadata +sample.meta = data.frame(SampleName=c('Chr18_MCF7_ER_1','Chr18_MCF7_ER_2','Chr18_MCF7_ER_3','Chr18_MCF7_input'), + Type = c("MCF7_ER_1","MCF7_ER_2","MCF7_ER_3","MCF7_input"), + Group = c("IP", "IP", "IP", "Input")) +sample.meta +``` + +Load track files: +```{r load_track_chip} +# track folder +track.folder = system.file("extdata", "ChIP-seq", package = "ggcoverage") +# load bigwig file +track.df = LoadTrackFile(track.folder = track.folder, format = "bw", + meta.info = sample.meta) +# check data +head(track.df) +``` + +Prepare mark region: +```{r prepare_mark_chip} +# create mark region +mark.region=data.frame(start=c(76822533), + end=c(76823743), + label=c("Promoter")) +# check data +mark.region +``` + +------------- + +## Basic coverage +```{r basic_coverage_chip, warning=FALSE, fig.height = 6, fig.width = 12, fig.align = "center"} +basic.coverage = ggcoverage(data = track.df, color = "auto", region = "chr18:76822285-76900000", + mark.region=mark.region, show.mark.label = FALSE) +basic.coverage +``` + +------------- + +## Add annotations +Add **gene**, **ideogram** and **peak** annotaions. To create peak annotaion, we first **get consensus peaks** with [MSPC](https://github.com/Genometric/MSPC), you can also use [DEbChIP's](https://github.com/showteeth/DEbChIP) `GetConsensusPeak` (`MSPC`'s wrapper) to do this. + +```{r peak_coverage, warning=FALSE, fig.height = 10, fig.width = 12, fig.align = "center"} +# get consensus peak file +peak.file = system.file("extdata", "ChIP-seq", "consensus.peak", package = "ggcoverage") + +basic.coverage + + geom_gene(gtf.gr=gtf.gr) + + geom_peak(bed.file = peak.file) + + geom_ideogram(genome = "hg19",plot.space = 0) +``` + +--------------------- + +# Session info +```{r session} +sessionInfo() +``` + + + + + + + + + +