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DESCRIPTION
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Package: ggcoverage
Type: Package
Title: ggcoverage - Visualize genomic coverage with various annotaion.
Version: 0.5.0
Authors@R:
person(given = "Yabing",
family = "Song",
role = c("aut", "cre"),
email = "[email protected]")
Maintainer: Yabing Song <[email protected]>
Description: The goal of ggcoverage is to simplify the process of visualizing genomic coverage. It contains functions to
load genomic data with bam/bigwig/bedgraph file format, create genomic coverage plot, add various annotation to
the coverage plot, including gene annotaion, transcription annotion, ideogram annotation and peak annotation.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Imports:
biovizBase,
dplyr,
GenomicRanges,
ggbio,
ggh4x,
ggplot2,
ggrepel,
grDevices,
IRanges,
magrittr,
patchwork,
RColorBrewer,
rlang,
Rsamtools,
rtracklayer,
scales,
stats,
utils
Suggests:
rmarkdown,
knitr,
BiocStyle,
htmltools
VignetteBuilder: knitr