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Accessor for colnames(colData(tds)) #61

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sgibb opened this issue Oct 19, 2017 · 0 comments
Open

Accessor for colnames(colData(tds)) #61

sgibb opened this issue Oct 19, 2017 · 0 comments
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@sgibb
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sgibb commented Oct 19, 2017

IMHO we need an shortcut/function to access the colnames of the colData slot.

For the Biobase::ExpressionSet or MSnbase::MSnSet this is fvarLabel (featureData slot).

Any suggestions for a good name?

Are our colData really featureData? If that's the case I would create an alias featureData for colData and would use fvarLabels for colnames(colData(tds)).

IMHO the features of an TopDownSet are the fragments so neither of the typical Biobase::phenoData nor Biobase::featureData fits.

@sgibb sgibb added the question label Oct 19, 2017
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