2 files changed
+2
-2
lines changedSubmodule biocpp-core updated 174 files
- .github/workflows/ci_linux.yml+14-8
- CHANGELOG.md+20
- README.md+2-2
- build_system/biocpp_io-config-version.cmake+1
- doc/overview.md+4-12
- doc/record_faq.md+68-68
- include/bio/io.hpp+2-2
- include/bio/io/detail/charconv.hpp+1-59
- include/bio/io/detail/concept.hpp+1-1
- include/bio/io/detail/reader_base.hpp+10-10
- include/bio/io/detail/tuple_record.hpp-3
- include/bio/io/detail/utility.hpp+61
- include/bio/io/detail/writer_base.hpp+20-7
- include/bio/io/exception.hpp+9-3
- include/bio/io/format/bcf_input_handler.hpp+119-117
- include/bio/io/format/bcf_output_handler.hpp+59-49
- include/bio/io/format/format_input_handler.hpp+1-1
- include/bio/io/format/vcf_input_handler.hpp+94-93
- include/bio/io/format/vcf_output_handler.hpp+37-51
- include/bio/io/seq/reader.hpp+47-21
- include/bio/io/seq/reader_options.hpp+3
- include/bio/io/seq/record.hpp+80-8
- include/bio/io/seq/writer.hpp+1-1
- include/bio/io/stream/detail/fast_streambuf_iterator.hpp+2-2
- include/bio/io/txt/misc.hpp+10
- include/bio/io/txt/reader.hpp+20-23
- include/bio/io/var/header.hpp+376-303
- include/bio/io/var/misc.hpp+30-33
- include/bio/io/var/reader.hpp+47-21
- include/bio/io/var/reader_options.hpp+2-2
- include/bio/io/var/record.hpp+451-244
- include/bio/io/var/writer.hpp+11-4
- test/biocpp_require_core_infrastructure.cmake+1-1
- test/documentation/CMakeLists.txt+20-18
- test/documentation/DoxygenLayout.xml-232
- test/documentation/DoxygenLayout.xml.module+5
- test/documentation/bio-doxygen-module.cmake+14
- test/documentation/bio-doxygen.cmake-73
- test/documentation/bio_doxygen_cfg.in-96
- test/documentation/biocpp_logo.svg-33
- test/documentation/doc_dev/CMakeLists.txt-42
- test/documentation/doc_usr/CMakeLists.txt-39
- test/snippet/detail/reader_base.cpp+1-1
- test/snippet/seq/seq_reader.cpp+10-10
- test/snippet/seq/seq_reader_options.cpp+1-4
- test/snippet/seq/seq_record.cpp+49
- test/snippet/seq/seq_writer.cpp+2-1
- test/snippet/var/var_reader_options.cpp+1-1
- test/snippet/var/var_writer.cpp+9-9
- test/unit/detail/CMakeLists.txt+3-2
- test/unit/detail/is_shallow_v_test.cpp+40
- test/unit/format/bcf_input_test.cpp+13-14
- test/unit/format/bcf_output_test.cpp+3-4
- test/unit/format/fasta_output_test.cpp+6-6
- test/unit/format/fastq_output_test.cpp+8-8
- test/unit/format/seq_output_detail.hpp+23-25
- test/unit/format/vcf_data.hpp+19-27
- test/unit/format/vcf_input_test.cpp+28-31
- test/unit/format/vcf_output_test.cpp+3-4
- test/unit/seq/CMakeLists.txt+1
- test/unit/seq/seq_reader_test.cpp+9-8
- test/unit/seq/seq_record_test.cpp+24
- test/unit/seq/seq_writer_test.cpp+6-17
- test/unit/var/var_header_test.cpp+76-76
- test/unit/var/var_reader_test.cpp+29-17
- test/unit/var/var_record_test.cpp+29-3
- test/unit/var/var_writer_test.cpp+32-32
0 commit comments