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| 1 | +# Changelog |
| 2 | + |
| 3 | +All notable changes to this project will be documented in this file. |
| 4 | + |
| 5 | +The format is based on [Keep a Changelog][], |
| 6 | +and this project adheres to [Semantic Versioning][]. |
| 7 | + |
| 8 | +[keep a changelog]: https://keepachangelog.com/en/1.0.0/ |
| 9 | +[semantic versioning]: https://semver.org/spec/v2.0.0.html |
| 10 | + |
| 11 | +## [0.2.9] - tbd |
| 12 | + |
| 13 | +### Fixed |
| 14 | + |
| 15 | +- Transformations of Points and Shapes are now applied before rendering with datashader (#378) |
| 16 | +- Fix bug due to `sc.get.obs_df()` returning a different type (#393) |
| 17 | +- Allowing instance mismatch between shapes and tables (#396) |
| 18 | +- Fix bug when plotting categorical points with datashader (#395) |
| 19 | + |
| 20 | +## [0.2.8] - 2024-11-26 |
| 21 | + |
| 22 | +### Changed |
| 23 | + |
| 24 | +- Support for `xarray.DataTree` (which moved from `datatree.DataTree`) (#380) |
| 25 | + |
| 26 | +## [0.2.7] - 2024-10-24 |
| 27 | + |
| 28 | +### Added |
| 29 | + |
| 30 | +- The user can now specify `datashader_reduction` to control the rendering behavior (#309) |
| 31 | +- Rendering outlines of shapes with datashader works now (#309) |
| 32 | + |
| 33 | +### Fixed |
| 34 | + |
| 35 | +- datashader now uses canvas size = image size which speeds up the rendering (#309) |
| 36 | +- datashader now uses the `linear` as interpolation method for colormaps instead of the default `eq_hist` to make it equivalent to matplotlib (#309) |
| 37 | +- point sizes of datashader now agree with matplotlib also when dpi != 100 (#309) |
| 38 | +- Giving a custom colormap when rendering a multiscale image now works (#586) |
| 39 | + |
| 40 | +## [0.2.6] - 2024-09-04 |
| 41 | + |
| 42 | +### Changed |
| 43 | + |
| 44 | +- Lowered RMSE-threshold for plot-based tests from 45 to 15 (#344) |
| 45 | +- When subsetting to `groups`, `NA` isn't automatically added to legend (#344) |
| 46 | +- When rendering a single image channel, a colorbar is now shown (#346) |
| 47 | +- Removed `percentiles_for_norm` parameter (#346) |
| 48 | +- Changed `norm` to no longer accept bools, only `mpl.colors.Normalise` or `None` (#346) |
| 49 | + |
| 50 | +### Fixed |
| 51 | + |
| 52 | +- Filtering with `groups` now preserves original cmap (#344) |
| 53 | +- Non-selected `groups` are now not shown in `na_color` (#344) |
| 54 | +- Several issues associated with `norm` and `colorbar` (#346) |
| 55 | + |
| 56 | +## [0.2.5] - 2024-08-23 |
| 57 | + |
| 58 | +### Changed |
| 59 | + |
| 60 | +- Replaced `outline` parameter in `render_labels` with alpha-based logic (#323) |
| 61 | +- Lowered RMSE-threshold for plot-based tests from 60 to 45 (#323) |
| 62 | +- Removed `preprocessing` (.pp) accessor (#329) |
| 63 | + |
| 64 | +### Fixed |
| 65 | + |
| 66 | +- Minor fixes for several tests as a result of the threshold change (#323) |
| 67 | + |
| 68 | +## [0.2.4] - 2024-08-07 |
| 69 | + |
| 70 | +### Added |
| 71 | + |
| 72 | +- Added utils function for 0-transparent cmaps (#302) |
| 73 | + |
| 74 | +### Fixed |
| 75 | + |
| 76 | +- Took RNG out of categorical label test (#306) |
| 77 | +- Performance bug when plotting shapes (#298) |
| 78 | +- scale parameter was ignored for single-scale images (#301) |
| 79 | +- Changes to support for dask-expr (#283) |
| 80 | +- Added error handling for non-existent elements (#305) |
| 81 | +- Specifying vmin and vmax properly clips image data (#307) |
| 82 | +- import bug `get_cmap()` (8fd969c) |
| 83 | + |
| 84 | +## [0.2.3] - 2024-07-03 |
| 85 | + |
| 86 | +### Added |
| 87 | + |
| 88 | +- Datashader support for points and shapes (#244) |
| 89 | + |
| 90 | +### Changed |
| 91 | + |
| 92 | +- All parameters are now provided for a single element (#272) |
| 93 | + |
| 94 | +### Fixed |
| 95 | + |
| 96 | +- Fix color assignment for NaN values (#257) |
| 97 | +- Zorder of rendering now strictly follows the order of the render_x calls (#244) |
| 98 | + |
| 99 | +## [0.2.2] - 2024-05-02 |
| 100 | + |
| 101 | +### Fixed |
| 102 | + |
| 103 | +- Fixed `fill_alpha` ignoring `alpha` channel from custom cmap (#236) |
| 104 | +- Fix channel str support (#221) |
| 105 | + |
| 106 | +## [0.2.1] - 2024-03-26 |
| 107 | + |
| 108 | +### Minor |
| 109 | + |
| 110 | +- Adjusted GitHub worklows |
| 111 | + |
| 112 | +## [0.2.0] - 2024-03-24 |
| 113 | + |
| 114 | +### Added |
| 115 | + |
| 116 | +- Support for plotting multiple tables @melonora |
| 117 | + |
| 118 | +### Fixed |
| 119 | + |
| 120 | +- Several bugfixes, especially for colors and palettes @melonora |
| 121 | + |
| 122 | +## [0.1.0] - 2024-01-17 |
| 123 | + |
| 124 | +### Added |
| 125 | + |
| 126 | +- Multiscale image handling: user can specify a scale, else the best scale is selected automatically given the figure size and dpi (#164) |
| 127 | +- Large images are automatically rasterized to speed up performance (#164) |
| 128 | +- Added better error message for mismatch in cs and ax number (#185) |
| 129 | +- Beter test coverage for correct plotting of elements after transformation (#198) |
| 130 | +- Can now stack render commands (#190, #192) |
| 131 | +- The `color` argument in render_shapes/points now accepts actual colors as well (#199) |
| 132 | +- Input arguments are now evaulated for their types in basic.py (#199) |
| 133 | + |
| 134 | +### Fixed |
| 135 | + |
| 136 | +- Now dropping index when plotting shapes after spatial query (#177) |
| 137 | +- Points are now being correctly rotated (#198) |
| 138 | +- User can now pass Colormap objects to the cmap argument in render_images. When only one cmap is given for 3 channels, it is now applied to each channel (#188, #194) |
| 139 | + |
| 140 | +## [0.0.6] - 2023-11-06 |
| 141 | + |
| 142 | +### Added |
| 143 | + |
| 144 | +- Pushed `get_extent` functionality upstream to `spatialdata` (#162) |
| 145 | + |
| 146 | +## [0.0.5] - 2023-10-02 |
| 147 | + |
| 148 | +### Added |
| 149 | + |
| 150 | +- Can now scale shapes (#152) |
| 151 | +- Can now plot columns from GeoDataFrame (#149) |
| 152 | + |
| 153 | +### Fixed |
| 154 | + |
| 155 | +- Multipolygons are now handled correctly (#93) |
| 156 | +- Legend order is now deterministic (#143) |
| 157 | +- Images no longer normalised by default (#150) |
| 158 | +- Filtering of shapes and points using the `groups` argument is now possible, coloring by palette and cmap arguments works for shapes and points (#153) |
| 159 | +- Colorbar no longer autoscales to [0, 1] (#155) |
| 160 | +- Plotting shapes after a spatial query is now possible (#163) |
| 161 | + |
| 162 | +## [0.0.4] - 2023-08-11 |
| 163 | + |
| 164 | +### Fixed |
| 165 | + |
| 166 | +- Multi-scale images/labels are now correctly substituted and the action is logged (#131). |
| 167 | +- Empty geometries among the shapes can be handeled (#133). |
| 168 | +- `outline_width` parameter in render_shapes is now a float that actually determines the line width (#139). |
| 169 | + |
| 170 | +## [0.0.2] - 2023-06-25 |
| 171 | + |
| 172 | +### Fixed |
| 173 | + |
| 174 | +- Multiple bugfixes of which I didn't keep track of. |
| 175 | + |
| 176 | +## [0.0.1] - 2023-04-04 |
| 177 | + |
| 178 | +### Added |
| 179 | + |
| 180 | +- Initial release of `spatialdata-plot` with support for `images`, `labels`, `points` and `shapes`. |
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