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Merge pull request #234 from theislab/image-directive
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README.rst

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Scanpy – Single-Cell Analysis in Python
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=======================================
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.. raw:: html
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.. image:: http://falexwolf.de/img/tsne_1.3M.png
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:width: 90px
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:align: left
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<p>
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<img src="http://falexwolf.de/img/tsne_1.3M.png" style="width: 90px; margin: 3px 10px 5px 5px" align="left">
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Scanpy is a scalable toolkit for analyzing single-cell gene expression
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data. It includes preprocessing, visualization, clustering, pseudotime and
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trajectory inference and differential expression testing. The Python-based
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implementation efficiently deals with datasets of more than one million
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cells.
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</p>
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Scanpy is a scalable toolkit for analyzing single-cell gene expression data.
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It includes preprocessing, visualization, clustering, pseudotime and trajectory
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inference and differential expression testing. The Python-based implementation
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efficiently deals with datasets of more than one million cells.
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Read the `documentation <https://scanpy.readthedocs.io>`__.
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If Scanpy is useful for your research, consider citing `Genome Biology (2018) <https://doi.org/10.1186/s13059-017-1382-0>`__.
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Read the documentation_.
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If Scanpy is useful for your research, consider citing `Genome Biology (2018)`_.
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.. _documentation: https://scanpy.readthedocs.io
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.. _Genome Biology (2018): https://doi.org/10.1186/s13059-017-1382-0

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