Skip to content

Commit 0e0db58

Browse files
committed
changelog: remove internal documentation links
They don't work on Github and may not work on readthedocs in the future, since we don't keep old versions of the documentation around.
1 parent c0c4bec commit 0e0db58

File tree

1 file changed

+15
-15
lines changed

1 file changed

+15
-15
lines changed

CHANGELOG.md

Lines changed: 15 additions & 15 deletions
Original file line numberDiff line numberDiff line change
@@ -12,7 +12,7 @@ and this project adheres to [Semantic Versioning][].
1212

1313
### Fixed
1414

15-
- Fixed an [issue](https://github.com/scverse/mudata/issues/99) in [`update()`](#mudata.MuData.update)
15+
- Fixed an [issue](https://github.com/scverse/mudata/issues/99) in `update()`
1616

1717
## [0.3.1]
1818

@@ -24,27 +24,27 @@ and this project adheres to [Semantic Versioning][].
2424

2525
### Added
2626

27-
- Pull/push interface for annotations: [`pull_obs()`](#mudata.MuData.pull_obs), [`pull_var()`](#mudata.MuData.pull_var), [`push_obs()`](#mudata.MuData.push_obs), [`push_var()`](#mudata.MuData.push_var)
28-
- Conversion functions: [`to_anndata()`](#mudata.MuData.to_anndata), [`to_mudata()`](#mudata.to_mudata)
29-
- [Concatenation](#mudata.concat) of MuData objects
27+
- Pull/push interface for annotations: `pull_obs()`, `pull_var()`, `push_obs()`, `push_var()`
28+
- Conversion functions: `to_anndata()`, `to_mudata()`
29+
- Concatenation of MuData objects
3030
- `MuData.mod_names` attribute
3131
- Pretty-printing for `MuData.mod`
3232
- `fsspec` support for readers.
3333

3434
### Fixed
3535

36-
- Improved performance and behavior of [`update()`](#mudata.MuData.update).
36+
- Improved performance and behavior of `update()`.
3737
For compatibility reasons, this release keeps the old behaviour of pulling annotations on read/update as default.
38-
- [`read_zarr()`](#mudata.read_zarr) now supports `mod-order`
38+
- `read_zarr()` now supports `mod-order`
3939
- Correct handling of the `uns` attribute by views.
4040

4141
### Note
4242

4343
If you want to adopt the new update behaviour, set `mudata.set_options(pull_on_update=False)`.
4444
This will be the default behaviour in the next release.
45-
With it, the annotations will not be copied from the modalities on [`update()`](#mudata.MuData.update) implicitly.
45+
With it, the annotations will not be copied from the modalities on `update()` implicitly.
4646

47-
To copy the annotations explicitly, you will need to use [`pull_obs()`](#mudata.MuData.pull_obs) and/or [`pull_var()`](#mudata.MuData.pull_var).
47+
To copy the annotations explicitly, you will need to use `pull_obs()` and/or `pull_var()`.
4848

4949
## [0.2.4]
5050

@@ -68,15 +68,15 @@ To copy the annotations explicitly, you will need to use [`pull_obs()`](#mudata.
6868

6969
### Fixed
7070

71-
- [`Path`](#pathlib.Path) objects now work in [](#mudata.read)
71+
- `Path` objects now work in `mudata.read()`
7272

7373
## [0.2.1]
7474

7575
### Added
7676

77-
- [`MuData.__len__`](#mudata.MuData.__len__).
77+
- `MuData.__len__`.
7878
This should make it easier to build MuData into workflows that operate on data containers with length.
79-
In practice using [`n_obs`](#mudata.MuData.n_obs) should be preferred.
79+
In practice using `n_obs` should be preferred.
8080

8181
### Changed
8282

@@ -85,7 +85,7 @@ To copy the annotations explicitly, you will need to use [`pull_obs()`](#mudata.
8585

8686
### Fixed
8787

88-
- Improvements and optimizations to [`update()`](#mudata.MuData.update)
88+
- Improvements and optimizations to `update()`
8989

9090
## [0.2.0]
9191

@@ -105,19 +105,19 @@ To copy the annotations explicitly, you will need to use [`pull_obs()`](#mudata.
105105

106106
### Changed
107107

108-
- Improved documentation, including [a new page describing the sharp bits](notebooks/nuances.ipynb)
108+
- Improved documentation, including a new page describing the sharp bits.
109109

110110
### Fixed
111111

112-
- Updating a MuData object with [`update()`](#mudata.MuData.update) is now much faster.
112+
- Updating a MuData object with `update()` is now much faster.
113113

114114
## [0.1.1]
115115

116116
- Various stability and bug fixes
117117

118118
## [0.1.0]
119119

120-
Initial `mudata` release with [`MuData`](#mudata.MuData), previously a part of the `muon` framework.
120+
Initial `mudata` release with `MuData`, previously a part of the `muon` framework.
121121

122122
[0.3.2]: https://github.com/scverse/mudata/compare/v0.3.1...v0.3.2
123123
[0.3.1]: https://github.com/scverse/mudata/compare/v0.3.0...v0.3.1

0 commit comments

Comments
 (0)