@@ -12,7 +12,7 @@ and this project adheres to [Semantic Versioning][].
1212
1313### Fixed
1414
15- - Fixed an [ issue] ( https://github.com/scverse/mudata/issues/99 ) in [ ` update() ` ] ( #mudata.MuData.update )
15+ - Fixed an [ issue] ( https://github.com/scverse/mudata/issues/99 ) in ` update() `
1616
1717## [ 0.3.1]
1818
@@ -24,27 +24,27 @@ and this project adheres to [Semantic Versioning][].
2424
2525### Added
2626
27- - Pull/push interface for annotations: [ ` pull_obs() ` ] ( #mudata.MuData.pull_obs ) , [ ` pull_var() ` ] ( #mudata.MuData.pull_var ) , [ ` push_obs() ` ] ( #mudata.MuData.push_obs ) , [ ` push_var() ` ] ( #mudata.MuData.push_var )
28- - Conversion functions: [ ` to_anndata() ` ] ( #mudata.MuData.to_anndata ) , [ ` to_mudata() ` ] ( #mudata.to_mudata )
29- - [ Concatenation] ( #mudata.concat ) of MuData objects
27+ - Pull/push interface for annotations: ` pull_obs() ` , ` pull_var() ` , ` push_obs() ` , ` push_var() `
28+ - Conversion functions: ` to_anndata() ` , ` to_mudata() `
29+ - Concatenation of MuData objects
3030- ` MuData.mod_names ` attribute
3131- Pretty-printing for ` MuData.mod `
3232- ` fsspec ` support for readers.
3333
3434### Fixed
3535
36- - Improved performance and behavior of [ ` update() ` ] ( #mudata.MuData.update ) .
36+ - Improved performance and behavior of ` update() ` .
3737 For compatibility reasons, this release keeps the old behaviour of pulling annotations on read/update as default.
38- - [ ` read_zarr() ` ] ( #mudata.read_zarr ) now supports ` mod-order `
38+ - ` read_zarr() ` now supports ` mod-order `
3939- Correct handling of the ` uns ` attribute by views.
4040
4141### Note
4242
4343If you want to adopt the new update behaviour, set ` mudata.set_options(pull_on_update=False) ` .
4444This will be the default behaviour in the next release.
45- With it, the annotations will not be copied from the modalities on [ ` update() ` ] ( #mudata.MuData.update ) implicitly.
45+ With it, the annotations will not be copied from the modalities on ` update() ` implicitly.
4646
47- To copy the annotations explicitly, you will need to use [ ` pull_obs() ` ] ( #mudata.MuData.pull_obs ) and/or [ ` pull_var() ` ] ( #mudata.MuData.pull_var ) .
47+ To copy the annotations explicitly, you will need to use ` pull_obs() ` and/or ` pull_var() ` .
4848
4949## [ 0.2.4]
5050
@@ -68,15 +68,15 @@ To copy the annotations explicitly, you will need to use [`pull_obs()`](#mudata.
6868
6969### Fixed
7070
71- - [ ` Path ` ] ( #pathlib.Path ) objects now work in [ ] ( # mudata.read)
71+ - ` Path ` objects now work in ` mudata.read() `
7272
7373## [ 0.2.1]
7474
7575### Added
7676
77- - [ ` MuData.__len__ ` ] ( #mudata.MuData.__len__ ) .
77+ - ` MuData.__len__ ` .
7878 This should make it easier to build MuData into workflows that operate on data containers with length.
79- In practice using [ ` n_obs ` ] ( #mudata.MuData.n_obs ) should be preferred.
79+ In practice using ` n_obs ` should be preferred.
8080
8181### Changed
8282
@@ -85,7 +85,7 @@ To copy the annotations explicitly, you will need to use [`pull_obs()`](#mudata.
8585
8686### Fixed
8787
88- - Improvements and optimizations to [ ` update() ` ] ( #mudata.MuData.update )
88+ - Improvements and optimizations to ` update() `
8989
9090## [ 0.2.0]
9191
@@ -105,19 +105,19 @@ To copy the annotations explicitly, you will need to use [`pull_obs()`](#mudata.
105105
106106### Changed
107107
108- - Improved documentation, including [ a new page describing the sharp bits] ( notebooks/nuances.ipynb )
108+ - Improved documentation, including a new page describing the sharp bits.
109109
110110### Fixed
111111
112- - Updating a MuData object with [ ` update() ` ] ( #mudata.MuData.update ) is now much faster.
112+ - Updating a MuData object with ` update() ` is now much faster.
113113
114114## [ 0.1.1]
115115
116116- Various stability and bug fixes
117117
118118## [ 0.1.0]
119119
120- Initial ` mudata ` release with [ ` MuData ` ] ( #mudata.MuData ) , previously a part of the ` muon ` framework.
120+ Initial ` mudata ` release with ` MuData ` , previously a part of the ` muon ` framework.
121121
122122[ 0.3.2 ] : https://github.com/scverse/mudata/compare/v0.3.1...v0.3.2
123123[ 0.3.1 ] : https://github.com/scverse/mudata/compare/v0.3.0...v0.3.1
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