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build_test_deploy.yml
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name: CI Pipeline
on:
push:
branches:
- master
pull_request:
branches:
- '*'
workflow_dispatch:
inputs:
debug_enabled:
type: boolean
description: 'Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)'
required: false
default: false
env:
USER_NAME: root
USER_UID: 1000
USER_GID: 1000
DOCKER_USER: ${{ secrets.DOCKER_USER }}
DOCKER_PASS: ${{ secrets.DOCKER_PASS }}
jobs:
static_frontend_code_checks:
runs-on: ubuntu-24.04
steps:
- name: Checkout code
uses: actions/checkout@v3
with:
fetch-depth: 5
- uses: actions/setup-node@v4
with:
node-version: 18
- name: Install frontend dependencies
run: corepack enable && yarn install --immutable
- name: Lint frontend code and check formatting
run: yarn run check-frontend
- name: Typecheck frontend code
run: yarn typecheck
- name: Check for cyclic dependencies in frontend
run: yarn check-cyclic-dependencies
build_test_deploy:
runs-on: ubuntu-24.04
env:
# The hostname used to communicate with the PostgreSQL service container
# POSTGRES_HOST: localhost
# POSTGRES_PORT: 5432
PGPASSWORD: secret_password
services:
postgres:
image: postgres:10-alpine
env:
POSTGRES_URL: jdbc:postgresql://postgres/webknossos
POSTGRES_USER: webknossos_user
POSTGRES_PASSWORD: secret_password
# Set health checks to wait until postgres has started
options: >-
--health-cmd pg_isready
--health-interval 2s
--health-timeout 5s
--health-retries 30
ports:
- 5432:5432
steps:
# Enable tmate debugging of manually-triggered workflows if the input option was provided
- name: Checkout code
uses: actions/checkout@v3
with:
fetch-depth: 5
- name: "Custom environment variables"
run: |
if [[ ${{ github.ref_type }} == "branch" ]]; then
NORMALIZED_BRANCH=$(echo ${{ github.ref_name }} | sed 's/[\/-]/_/g')
echo "NORMALIZED_BRANCH=$NORMALIZED_BRANCH" >> $GITHUB_ENV
DOCKER_TAG="${NORMALIZED_BRANCH}__${{ github.run_number }}"
echo "DOCKER_TAG=$DOCKER_TAG" >> $GITHUB_ENV
else
echo "NORMALIZED_BRANCH=master" >> $GITHUB_ENV
echo "DOCKER_TAG=${{ github.ref_name }}" >> $GITHUB_ENV
fi
- uses: actions/setup-node@v4
with:
node-version: 18
- name: Install frontend dependencies
run: corepack enable && yarn install --immutable
- name: Build webknossos (webpack)
run: yarn build
- name: Set up Java
uses: actions/setup-java@v4
with:
distribution: 'temurin' # See 'Supported distributions' for available options
java-version: '21'
cache: 'sbt'
- name: Set up sbt
uses: sbt/setup-sbt@v1
- name: Install OS dependencies / libs
run: sudo apt-get update && sudo apt-get install -y libdraco-dev libblosc-dev
# build-essential \
# cmake \
# - name: Prepare dependency folders
# run: mkdir -p project/target target ~/.ivy2 ~/.cache/coursier
# - name: Assert unique evolution numbers
# run: node tools/postgres/dbtool.js assert-unique-evolution-numbers
# - name: Assert schema.sql and evolutions are equal
# run: |
# docker compose up -d postgres
# sleep 3
# docker compose run compile tools/postgres/dbtool.js check-evolutions-schema
- name: Setup tmate session
uses: mxschmitt/action-tmate@v3
if: ${{ github.event_name == 'workflow_dispatch' && inputs.debug_enabled }}
- name: Build webknossos (sbt)
run: |
if [ "${{ github.ref }}" == "refs/heads/master" ]; then
sbt -no-colors clean compile stage
else
sbt -no-colors -DfailOnWarning compile stage
fi
env:
POSTGRES_URL: jdbc:postgresql://webknossos_user:secret_password@localhost:5432/webknossos
POSTGRES_USER: webknossos_user
POSTGRES_PASSWORD: secret_password
- name: Build webknossos-datastore (sbt)
run: sbt -no-colors -DfailOnWarning "project webknossosDatastore" copyMessages compile stage
- name: Build webknossos-tracingstore (sbt)
run: sbt -no-colors -DfailOnWarning "project webknossosTracingstore" copyMessages compile stage
- name: Checksum App Dirs
run: find app webknossos-datastore/app webknossos-tracingstore/app -type f -exec md5sum {} \; | sort -k 2 | md5sum > app_checksum.txt
- name: Set up Docker
uses: docker/setup-buildx-action@v2
- name: Build webknossos docker image
run: |
docker pull scalableminds/webknossos:$NORMALIZED_BRANCH || true
DEV_CACHE=$NORMALIZED_BRANCH docker compose build --pull webknossos
env:
POSTGRES_URL: jdbc:postgresql://webknossos_user@localhost:5432/webknossos
POSTGRES_USER: webknossos_user
PGUSER: webknossos_user
POSTGRES_PASSWORD: secret_password
PGPASSWORD: secret_password
- name: Build webknossos-datastore docker image
run: docker compose build --pull webknossos-datastore
- name: Build webknossos-tracingstore docker image
run: docker compose build --pull webknossos-tracingstore
- name: Lint backend code and check formatting
run: .github/not-on-master.sh docker compose run backend-lint-format
- name: Run backend tests
run: .github/not-on-master.sh docker compose run backend-tests
- name: Run end-to-end tests
run: |
for i in {1..3}; do # retry
.github/not-on-master.sh docker compose run e2e-tests && s=0 && break || s=$?
done
(exit $s)
- name: Start webknossos, datastore, and tracingstore
run: |
docker compose up -d webknossos
docker compose up -d webknossos-datastore
docker compose up -d webknossos-tracingstore
- name: Run webknossos smoke test
uses: ./.github/actions/health_check_action
with:
url: http://localhost:9000/api/health
- name: Run webknossos-datastore smoke test
uses: ./.github/actions/health_check_action
with:
url: http://localhost:9090/data/health
- name: Run webknossos-tracingstore smoke test
uses: ./.github/actions/health_check_action
with:
url: http://localhost:9050/tracings/health
- name: Stop webknossos, datastore, and tracingstore
run: docker compose down --volumes --remove-orphans
- name: Push docker images
run: |
function retry() {
for i in {1..5}; do
"$@" && s=0 && break || s=$?
sleep 10
done
return $s
}
retry docker login -u $DOCKER_USER -p $DOCKER_PASS
retry docker compose push webknossos
retry docker compose push webknossos-datastore
retry docker compose push webknossos-tracingstore
if [[ ${{ github.ref_type }} == "branch" ]]; then
docker tag scalableminds/webknossos:${DOCKER_TAG} scalableminds/webknossos:${NORMALIZED_BRANCH}
retry docker push scalableminds/webknossos:${NORMALIZED_BRANCH}
docker tag scalableminds/webknossos-datastore:${DOCKER_TAG} scalableminds/webknossos-datastore:${NORMALIZED_BRANCH}
retry docker push scalableminds/webknossos-datastore:${NORMALIZED_BRANCH}
docker tag scalableminds/webknossos-tracingstore:${DOCKER_TAG} scalableminds/webknossos-tracingstore:${NORMALIZED_BRANCH}
retry docker push scalableminds/webknossos-tracingstore:${NORMALIZED_BRANCH}
docker tag scalableminds/webknossos-dev scalableminds/webknossos-dev:${NORMALIZED_BRANCH}
retry docker push scalableminds/webknossos-dev:${NORMALIZED_BRANCH}
fi
docker logout
- name: Build frontend documentation
run: |
WK_VERSION=${{ github.event.release.tag_name || github.run_number || 'dev' }}
yarn run docs --project-version $WK_VERSION
- name: Report coverage
run: .github/not-on-master.sh docker compose run base yarn coverage || true
# - name: Send Slack notification (master only)
# run: .circleci/slack-notification.sh