DESCRIPTION

Package: methylSig
Title: MethylSig: Differential Methylation Testing for WGBS and RRBS Data
Version: 1.17.0
Date: 2020-04-22
Authors@R:
    c(person(given = "Yongseok",
             family = "Park",
             role = "aut",
             email = "yongpark@pitt.edu"),
      person(given = "Raymond G.",
             family = "Cavalcante",
             role = c("aut", "cre"),
             email = "rcavalca@umich.edu"))
Description: MethylSig is a package for testing for
    differentially methylated cytosines (DMCs) or regions (DMRs) in
    whole-genome bisulfite sequencing (WGBS) or reduced representation
    bisulfite sequencing (RRBS) experiments.  MethylSig uses a beta
    binomial model to test for significant differences between groups of
    samples. Several options exist for either site-specific or sliding
    window tests, and variance estimation.
Depends:
    R (>= 3.6)
Imports:
    bsseq,
    DelayedArray,
    DelayedMatrixStats,
    DSS,
    IRanges,
    GenomeInfoDb,
    GenomicRanges,
    methods,
    parallel,
    stats,
    S4Vectors
Suggests:
    BiocStyle,
    bsseqData,
    knitr,
    rmarkdown,
    testthat (>= 2.1.0),
    covr
License: GPL-3
BugReports: https://github.com/sartorlab/methylSig/issues
biocViews: DNAMethylation, DifferentialMethylation, Epigenetics,
    Regression, MethylSeq
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 7.1.0