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LF.7 + Orf1a:R1225I + S:H445P (29, 5 places, including South Africa ) #2349

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FedeGueli opened this issue Jan 8, 2025 · 7 comments
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LF.7 + Orf1a:R1225I + S:H445P (29, 5 places, including South Africa ) #2349

FedeGueli opened this issue Jan 8, 2025 · 7 comments
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LF.7 S:445
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LF.7.7.2

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@FedeGueli
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FedeGueli commented Jan 8, 2025 •
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Mistakenly proposed first in cov-lineages/pango-designation#2858

LF.7 + Orf1a:R1225I seems a very good fast evolving branch it got 572I (cov-lineages/pango-designation#2855) and S:K529N (#2010)
Here i want to propose a third branch within it this time with S:H445P.
LF.7 >> Orf1a:R1225I (G3939T) > S:H445P (22896C)
Query:G3939T, C7869T,22896C
Samples: 27
Places: US (4 States), UK, South Africa (GBW), Canada, England
First sampled in Connecticut on 2024-10-26
Tree:
Screenshot 2025-01-08 alle 18 45 56
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/hgPhyloPlace/subtreeAuspice1_genome_test_48e68_eb6820.json?label=id:node_7193103
@FedeGueli FedeGueli mentioned this issue Jan 8, 2025
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@FedeGueli FedeGueli changed the title LF.7 + Orf1a:R1225I + S:H445P (8, 3 places, mainly US) LF.7 + Orf1a:R1225I + S:H445P (9, 4 places, including South Africa ) Jan 13, 2025
@FedeGueli
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+1 Canada

@FedeGueli FedeGueli changed the title LF.7 + Orf1a:R1225I + S:H445P (9, 4 places, including South Africa ) LF.7 + Orf1a:R1225I + S:H445P (12, 4 places, including South Africa ) Jan 15, 2025
@FedeGueli
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  • 3 California

@FedeGueli FedeGueli changed the title LF.7 + Orf1a:R1225I + S:H445P (12, 4 places, including South Africa ) LF.7 + Orf1a:R1225I + S:H445P (15, 4 places, including South Africa ) Jan 21, 2025
@FedeGueli
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15

@FedeGueli FedeGueli changed the title LF.7 + Orf1a:R1225I + S:H445P (15, 4 places, including South Africa ) LF.7 + Orf1a:R1225I + S:H445P (20, 4 places, including South Africa ) Jan 27, 2025
@FedeGueli
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20 Ontario NY Maryland

@FedeGueli FedeGueli changed the title LF.7 + Orf1a:R1225I + S:H445P (20, 4 places, including South Africa ) LF.7 + Orf1a:R1225I + S:H445P (27, 5 places, including South Africa ) Jan 30, 2025
@FedeGueli
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FedeGueli commented Jan 30, 2025 •
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+7 Canada it entered a cluster in Quebec

@FedeGueli FedeGueli changed the title LF.7 + Orf1a:R1225I + S:H445P (27, 5 places, including South Africa ) LF.7 + Orf1a:R1225I + S:H445P (29, 5 places, including South Africa ) Feb 4, 2025
@FedeGueli
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+2 Canada

@FedeGueli FedeGueli mentioned this issue Feb 4, 2025
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@FedeGueli FedeGueli added this to the LF.7.7.2 milestone Feb 6, 2025
@FedeGueli
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Designated LF.7.7.2 via cov-lineages/pango-designation@b1ba75a

FedeGueli referenced this issue in cov-lineages/pango-designation Feb 6, 2025
@corneliusroemer
Designate LF.7.7(.1/2)
b1ba75a
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