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BTK - re-implementation #97

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DLBPointon opened this issue Feb 25, 2025 · 1 comment

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DLBPointon commented Feb 25, 2025

Currently we are running btk on the entire assembly, however, this is an expensive process and so we need to think about other ways to run this.

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DLBPointon commented Feb 25, 2025 •

edited

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Potential implementations which could all lead to a reduction in computational load are:

Filter by length of scaffold < 90mb
Filter by tag from Tiara/FCS-gx - Contaminant sequence containing scaffolds are extracted and run through BTK alone (loss of genomic context which may make the above a preferable option) - Could lead to a dramatic reduction in computational load.
Option to run as standard
Other options?

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