numpy.disutils not found

[beew]

Environment

• OS: Ubuntu 24.04.1
• Sage Version: 10.5

Steps To Reproduce

run

./configure

enable some packages that require setuptools e.g scs, then

make build 

then it failed with

ModuleNotFoundError: No module named 'numpy.distutils'

Config log

config.log

Package logs

scs-3.2.3.log

Additional Information

Ubuntu 24.04's python version is 3.12 where numpy.disutils is deprecated. I think overriding system's python3 and use the SPKG version in the configure step would fix it, but I am not sure how to do it.

https://numpy.org/doc/2.1/reference/distutils_status_migration.html

Thanks.

Checklist

• I have searched the existing issues for a bug report that matches the one I want to file, without success.
• I have read the documentation and troubleshoot guide

[beew]

Add the options

--with-system-python3=no  --with-system-python_build=no 

Reconfigure confirms that the SPKG version is installed

python3:             no; standard, SPKG version 3.12.5 is already installed

But make build still failed with the same error. (python version in SPKG is > 3.12 as well)

[scs-3.2.3] [spkg-install] * Creating isolated environment: venv+pip...
[scs-3.2.3] [spkg-install] * Installing packages in isolated environment:
[scs-3.2.3] [spkg-install]   - numpy
[scs-3.2.3] [spkg-install]   - setuptools
[scs-3.2.3] [spkg-install]   - wheel
[scs-3.2.3] [spkg-install] * Getting build dependencies for wheel...
[scs-3.2.3] [spkg-install] Namespace(scs=False, gpu=False, mkl=False, openmp=False, float32=False, extraverbose=False, gpu_atrans=True, int32=False, blas64=False)
[scs-3.2.3] [spkg-install] * Installing packages in isolated environment:
[scs-3.2.3] [spkg-install]   - numpy >= 1.7
[scs-3.2.3] [spkg-install] * Building wheel...
[scs-3.2.3] [spkg-install] Namespace(scs=False, gpu=False, mkl=False, openmp=False, float32=False, extraverbose=False, gpu_atrans=True, int32=False, blas64=False)
[scs-3.2.3] [spkg-install] running bdist_wheel
[scs-3.2.3] [spkg-install] running build
[scs-3.2.3] [spkg-install] running build_py
[scs-3.2.3] [spkg-install] creating build
[scs-3.2.3] [spkg-install] creating build/lib.linux-x86_64-cpython-312
[scs-3.2.3] [spkg-install] creating build/lib.linux-x86_64-cpython-312/scs
[scs-3.2.3] [spkg-install] copying src/__init__.py -> build/lib.linux-x86_64-cpython-312/scs
[scs-3.2.3] [spkg-install] running build_ext
[scs-3.2.3] [spkg-install] Traceback (most recent call last):
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/pyproject_hooks/_in_process/_in_process.py", line 373, in <module>
[scs-3.2.3] [spkg-install]     main()
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/pyproject_hooks/_in_process/_in_process.py", line 357, in main
[scs-3.2.3] [spkg-install]     json_out["return_val"] = hook(**hook_input["kwargs"])
[scs-3.2.3] [spkg-install]                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/pyproject_hooks/_in_process/_in_process.py", line 271, in build_wheel
[scs-3.2.3] [spkg-install]     return _build_backend().build_wheel(
[scs-3.2.3] [spkg-install]            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/build_meta.py", line 420, in build_wheel
[scs-3.2.3] [spkg-install]     return self._build_with_temp_dir(
[scs-3.2.3] [spkg-install]            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/build_meta.py", line 402, in _build_with_temp_dir
[scs-3.2.3] [spkg-install]     self.run_setup()
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/build_meta.py", line 318, in run_setup
[scs-3.2.3] [spkg-install]     exec(code, locals())
[scs-3.2.3] [spkg-install]   File "<string>", line 313, in <module>
[scs-3.2.3] [spkg-install]   File "<string>", line 285, in install_scs
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/__init__.py", line 111, in setup
[scs-3.2.3] [spkg-install]     return distutils.core.setup(**attrs)
[scs-3.2.3] [spkg-install]            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/_distutils/core.py", line 184, in setup
[scs-3.2.3] [spkg-install]     return run_commands(dist)
[scs-3.2.3] [spkg-install]            ^^^^^^^^^^^^^^^^^^
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/_distutils/core.py", line 200, in run_commands
[scs-3.2.3] [spkg-install]     dist.run_commands()
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/_distutils/dist.py", line 964, in run_commands
[scs-3.2.3] [spkg-install]     self.run_command(cmd)
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/dist.py", line 948, in run_command
[scs-3.2.3] [spkg-install]     super().run_command(command)
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/_distutils/dist.py", line 983, in run_command
[scs-3.2.3] [spkg-install]     cmd_obj.run()
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/command/bdist_wheel.py", line 384, in run
[scs-3.2.3] [spkg-install]     self.run_command("build")
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
[scs-3.2.3] [spkg-install]     self.distribution.run_command(command)
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/dist.py", line 948, in run_command
[scs-3.2.3] [spkg-install]     super().run_command(command)
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/_distutils/dist.py", line 983, in run_command
[scs-3.2.3] [spkg-install]     cmd_obj.run()
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/_distutils/command/build.py", line 135, in run
[scs-3.2.3] [spkg-install]     self.run_command(cmd_name)
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
[scs-3.2.3] [spkg-install]     self.distribution.run_command(command)
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/dist.py", line 948, in run_command
[scs-3.2.3] [spkg-install]     super().run_command(command)
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/_distutils/dist.py", line 982, in run_command
[scs-3.2.3] [spkg-install]     cmd_obj.ensure_finalized()
[scs-3.2.3] [spkg-install]   File "/tmp/build-env-4whq5rd8/lib/python3.12/site-packages/setuptools/_distutils/cmd.py", line 111, in ensure_finalized
[scs-3.2.3] [spkg-install]     self.finalize_options()
[scs-3.2.3] [spkg-install]   File "<string>", line 142, in finalize_options
[scs-3.2.3] [spkg-install]   File "<string>", line 97, in get_infos
[scs-3.2.3] [spkg-install] ModuleNotFoundError: No module named 'numpy.distutils'
[scs-3.2.3] [spkg-install] 
[scs-3.2.3] [spkg-install] ERROR Backend subprocess exited when trying to invoke build_wheel
[scs-3.2.3] [spkg-install] Warning: building with "python3 -m build --wheel --outdir=dist   ." failed.
[scs-3.2.3] [spkg-install] Retrying with "python3 -m build --wheel --outdir=dist --no-isolation --skip-dependency-check  .".
[scs-3.2.3] [spkg-install] * Building wheel...
[scs-3.2.3] [spkg-install] Namespace(scs=False, gpu=False, mkl=False, openmp=False, float32=False, extraverbose=False, gpu_atrans=True, int32=False, blas64=False)
[scs-3.2.3] [spkg-install] running bdist_wheel
[scs-3.2.3] [spkg-install] running build
[scs-3.2.3] [spkg-install] running build_py
[scs-3.2.3] [spkg-install] copying src/__init__.py -> build/lib.linux-x86_64-cpython-312/scs
[scs-3.2.3] [spkg-install] running build_ext
[scs-3.2.3] [spkg-install] Traceback (most recent call last):
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/pyproject_hooks/_in_process/_in_process.py", line 373, in <module>
[scs-3.2.3] [spkg-install]     main()
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/pyproject_hooks/_in_process/_in_process.py", line 357, in main
[scs-3.2.3] [spkg-install]     json_out["return_val"] = hook(**hook_input["kwargs"])
[scs-3.2.3] [spkg-install]                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/pyproject_hooks/_in_process/_in_process.py", line 271, in build_wheel
[scs-3.2.3] [spkg-install]     return _build_backend().build_wheel(
[scs-3.2.3] [spkg-install]            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/build_meta.py", line 420, in build_wheel
[scs-3.2.3] [spkg-install]     return self._build_with_temp_dir(
[scs-3.2.3] [spkg-install]            ^^^^^^^^^^^^^^^^^^^^^^^^^^
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/build_meta.py", line 402, in _build_with_temp_dir
[scs-3.2.3] [spkg-install]     self.run_setup()
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/build_meta.py", line 318, in run_setup
[scs-3.2.3] [spkg-install]     exec(code, locals())
[scs-3.2.3] [spkg-install]   File "<string>", line 313, in <module>
[scs-3.2.3] [spkg-install]   File "<string>", line 285, in install_scs
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/__init__.py", line 111, in setup
[scs-3.2.3] [spkg-install]     return distutils.core.setup(**attrs)
[scs-3.2.3] [spkg-install]            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/_distutils/core.py", line 184, in setup
[scs-3.2.3] [spkg-install]     return run_commands(dist)
[scs-3.2.3] [spkg-install]            ^^^^^^^^^^^^^^^^^^
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/_distutils/core.py", line 200, in run_commands
[scs-3.2.3] [spkg-install]     dist.run_commands()
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/_distutils/dist.py", line 964, in run_commands
[scs-3.2.3] [spkg-install]     self.run_command(cmd)
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/dist.py", line 948, in run_command
[scs-3.2.3] [spkg-install]     super().run_command(command)
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/_distutils/dist.py", line 983, in run_command
[scs-3.2.3] [spkg-install]     cmd_obj.run()
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/command/bdist_wheel.py", line 384, in run
[scs-3.2.3] [spkg-install]     self.run_command("build")
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
[scs-3.2.3] [spkg-install]     self.distribution.run_command(command)
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/dist.py", line 948, in run_command
[scs-3.2.3] [spkg-install]     super().run_command(command)
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/_distutils/dist.py", line 983, in run_command
[scs-3.2.3] [spkg-install]     cmd_obj.run()
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/_distutils/command/build.py", line 135, in run
[scs-3.2.3] [spkg-install]     self.run_command(cmd_name)
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
[scs-3.2.3] [spkg-install]     self.distribution.run_command(command)
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/dist.py", line 948, in run_command
[scs-3.2.3] [spkg-install]     super().run_command(command)
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/_distutils/dist.py", line 982, in run_command
[scs-3.2.3] [spkg-install]     cmd_obj.ensure_finalized()
[scs-3.2.3] [spkg-install]   File "/home/mb/opt/sagemath/local/var/lib/sage/venv-python3.12.5/lib/python3.12/site-packages/setuptools/_distutils/cmd.py", line 111, in ensure_finalized
[scs-3.2.3] [spkg-install]     self.finalize_options()
[scs-3.2.3] [spkg-install]   File "<string>", line 142, in finalize_options
[scs-3.2.3] [spkg-install]   File "<string>", line 97, in get_infos
[scs-3.2.3] [spkg-install] ModuleNotFoundError: No module named 'numpy.distutils'
[scs-3.2.3] [spkg-install] 
[scs-3.2.3] [spkg-install] ERROR Backend subprocess exited when trying to invoke build_wheel
[scs-3.2.3] [spkg-install] **************************************************************************************************************************************************************************************************************************************************************
[scs-3.2.3] [spkg-install] Error building a wheel for scs-3.2.3
[scs-3.2.3] [spkg-install] ***************************************************