update github workflow to be compatible actions/checkout@v4 (#11)

* update github workflow to be compatible actions/checkout@v4

* DESCRIPTION up to dev version

Author: berthetclement

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,51 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+
+name: R-CMD-check.yaml
+
+permissions: read-all
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

.github/workflows/test-coverage.yaml

@@ -4,9 +4,10 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
 
-name: test-coverage
+name: test-coverage.yaml
+
+permissions: read-all
 
 jobs:
   test-coverage:
@@ -15,36 +16,46 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::covr
+          extra-packages: any::covr, any::xml2
           needs: coverage
 
       - name: Test coverage
         run: |
-          covr::codecov(
+          cov <- covr::package_coverage(
             quiet = FALSE,
             clean = FALSE,
-            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
+      - uses: codecov/codecov-action@v4
+        with:
+          # Fail if error if not on PR, or if on PR and token is given
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
       - name: Show testthat output
         if: always()
         run: |
           ## --------------------------------------------------------------------
-          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
         shell: bash
 
       - name: Upload test results
         if: failure()
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: coverage-test-failures
           path: ${{ runner.temp }}/package

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: spMaps
 Type: Package
 Title: Europe SpatialPolygonsDataFrame Builder
-Version: 0.5.0
+Version: 0.5.1.9000
 Authors@R: c(
      person("Tatiana", "Vargas", email = "[email protected]", role = c("aut", "cre")),
     person("Jalal-Edine", "ZAWAM", role = "aut"),

NEWS.md

@@ -1,3 +1,11 @@
+# spMaps 0.5.1.9000
+
+GITHUB ACTIONS :  
+
+* Actions artifacts v3 is closing down, update to v4  
+* test-coverage.yaml updated 
+
+
 # changes in version 0.5.0 (2023-08-31)
 
 * rgeos and raster replaced by sf

README.md

@@ -3,8 +3,8 @@
 > The `spMaps` package provides functions allow to build custom maps.
 
 <!-- badges: start -->
-[![R-CMD-check](https://github.com/rte-antares-rpackage/spMaps/actions/workflows/check-standard.yaml/badge.svg)](https://github.com/rte-antares-rpackage/spMaps/actions/workflows/check-standard.yaml)
-[![Codecov test coverage](https://codecov.io/gh/rte-antares-rpackage/spMaps/branch/master/graph/badge.svg)](https://app.codecov.io/gh/rte-antares-rpackage/spMaps?branch=master)
+[![R-CMD-check](https://github.com/rte-antares-rpackage/spMaps/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/rte-antares-rpackage/spMaps/actions/workflows/R-CMD-check.yaml)
+[![Codecov test coverage](https://codecov.io/gh/rte-antares-rpackage/spMaps/graph/badge.svg)](https://app.codecov.io/gh/rte-antares-rpackage/spMaps)
 [![CRAN status](https://www.r-pkg.org/badges/version/spMaps)](https://CRAN.R-project.org/package=spMaps)
 <!-- badges: end -->
 

spMaps.Rproj

@@ -18,4 +18,4 @@ BuildType: Package
 PackageUseDevtools: Yes
 PackageInstallArgs: --no-multiarch --with-keep.source
 PackageCheckArgs: --no-manual
-PackageRoxygenize: rd,collate,namespace,vignette
+PackageRoxygenize: rd,collate,namespace