@@ -121,18 +121,18 @@ def convert_raw_to_fastq(self):
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def generate_norm_counts (self ):
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config = self .pipeline .get_software_configuration ('tell-seq' )
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- job = TRNormCountsJob (self .pipeline .run_dir ,
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- self .pipeline .output_path ,
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- self .pipeline .input_file_path ,
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- config ['queue' ],
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- config ['nodes' ],
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- config ['wallclock_time_in_minutes' ],
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- config ['normcount_mem_limit' ],
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- config ['modules_to_load' ],
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- self .master_qiita_job_id ,
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- 'foo ' ,
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- config ['integrate_script_path' ],
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- self .qiita_job_id )
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+ job = SeqCountsJob (self .pipeline .run_dir ,
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+ self .pipeline .output_path ,
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+ self .pipeline .input_file_path ,
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+ config ['queue' ],
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+ config ['nodes' ],
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+ config ['wallclock_time_in_minutes' ],
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+ config ['normcount_mem_limit' ],
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+ config ['modules_to_load' ],
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+ self .master_qiita_job_id ,
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+ ' ' ,
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+ config ['integrate_script_path' ],
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+ self .qiita_job_id )
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job .run (callback = self .status_update_callback )
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