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lines changed Original file line number Diff line number Diff line change @@ -88,10 +88,10 @@ jobs:
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conda activate klp
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# creating bcl-convert/sbatch/squeue executable
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- cp `pwd`/tests/bin/bcl-convert ${CONDA_PREFIX}/bin/
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- echo 'echo "$@ "' > ${CONDA_PREFIX}/ bin/sbatch
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- echo 'echo -e "JOBID,STATE\n1234,COMPLETED"' > ${CONDA_PREFIX}/ bin/squeue
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- chmod +x ${CONDA_PREFIX}/bin/sbatch ${CONDA_PREFIX}/ bin/squeue ${CONDA_PREFIX}/bin/bcl-convert
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+ echo 'echo "$@"' > `pwd`/tests/bin/sbatch
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+ echo 'echo -e "JOBID,STATE\n1234,COMPLETED "' > `pwd`/tests/ bin/squeue
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+ chmod +x `pwd`/tests/bin/sbatch `pwd`/tests/ bin/squeue `pwd`/tests/bin/bcl-convert
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+ echo `pwd`/tests/ bin/ >> "$GITHUB_PATH"
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export QIITA_ROOTCA_CERT=`pwd`/qiita-dev/qiita_core/support_files/ci_rootca.crt
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export QIITA_CONFIG_FP=`pwd`/qiita-dev/qiita_core/support_files/config_test_local.cfg
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