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clean debug infos
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‎qiita_client/tests/test_qiita_client.py‎

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@@ -532,8 +532,6 @@ def test_fetch_directory(self):
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base_data_dir = ainfo['files']['raw_forward_seqs'][0]['filepath'][
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:(-1 * len('raw_data/1_s_G1_L001_sequences.fastq.gz'))]
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print("@@@@@@@@@@@STEFAN", base_data_dir)
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# creating a LOCAL test directory within base_data_dir as the DB entry
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# but no files exist. "job" is the according mountpoint
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fp_test = join(base_data_dir, 'job', '2_test_folder')
@@ -548,14 +546,6 @@ def test_fetch_directory(self):
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# (=prefix) than it was generated
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prefix = join(expanduser("~"), 'localFetch')
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fp_obs = self.tester.fetch_file_from_central(fp_test, prefix=prefix)
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print("@@@@@@@@@@@STEFAN 2", prefix, fp_test, fp_obs)
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from glob import glob
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for fp in glob("%s/**/*" % prefix, recursive=True):
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print("@@@@@@@@@@@ STEFAN present: %s" % fp)
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with open('/tmp/stefan.log') as f:
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print("üüüüüüüüüü log from qiita\n %s" % f.readlines())
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# test a file of the freshly transferred directory from main has
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# expected file content
@@ -565,62 +555,3 @@ def test_fetch_directory(self):
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if __name__ == '__main__':
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main()
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# tinqiita
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# base_data_dir: /qiita_data/
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# prefix: /root/localFetch
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# actual files after fetch
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# @@@@@@@@@@@ STEFAN present: /root/localFetch/qiita_data/job/2_test_folder/testdir/fileA.txt
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# @@@@@@@@@@@ STEFAN present: /root/localFetch/qiita_data/job/2_test_folder/testdir/subdirB_l1/fileE.sff
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# @@@@@@@@@@@ STEFAN present: /root/localFetch/qiita_data/job/2_test_folder/testdir/subdirA_l1/fileB.fna
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# @@@@@@@@@@@ STEFAN present: /root/localFetch/qiita_data/job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileC.log
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# @@@@@@@@@@@ STEFAN present: /root/localFetch/qiita_data/job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileD.seq
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# files at Main:
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# 'üüüüüüüü qiita filepath=/qiita_data/job/2_test_folder/testdir/fileA.txt\n',
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# 'üüüüüüüü qiita filepath=/qiita_data/job/2_test_folder/testdir/subdirB_l1/fileE.sff\n',
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# 'üüüüüüüü qiita filepath=/qiita_data/job/2_test_folder/testdir/subdirA_l1/fileB.fna\n',
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# 'üüüüüüüü qiita filepath=/qiita_data/job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileC.log\n',
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# 'üüüüüüüü qiita filepath=/qiita_data/job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileD.seq\n']
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# when fetching dir
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# <ZipInfo filename='testdir/fileA.txt' compress_type=deflate filemode='-rw-r--r--' file_size=9 compress_size=11>,
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# <ZipInfo filename='testdir/subdirB_l1/fileE.sff' compress_type=deflate filemode='-rw-r--r--' file_size=5 compress_size=7>,
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# <ZipInfo filename='testdir/subdirA_l1/fileB.fna' compress_type=deflate filemode='-rw-r--r--' file_size=10 compress_size=10>,
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# <ZipInfo filename='testdir/subdirA_l1/subdirC_l2/fileC.log' compress_type=deflate filemode='-rw-r--r--' file_size=10 compress_size=12>,
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# <ZipInfo filename='testdir/subdirA_l1/subdirC_l2/fileD.seq' compress_type=deflate filemode='-rw-r--r--' file_size=4 compress_size=6>]
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# üüüüüüüü da bin ich baff=/qiita_data/job/2_test_folder/testdir/fileA.txt testdir/fileA.txt
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# üüüüüüüü da bin ich baff=/qiita_data/job/2_test_folder/testdir/subdirB_l1/fileE.sff testdir/subdirB_l1/fileE.sff
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# üüüüüüüü da bin ich baff=/qiita_data/job/2_test_folder/testdir/subdirA_l1/fileB.fna testdir/subdirA_l1/fileB.fna
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# üüüüüüüü da bin ich baff=/qiita_data/job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileC.log testdir/subdirA_l1/subdirC_l2/fileC.log
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# üüüüüüüü da bin ich baff=/qiita_data/job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileD.seq testdir/subdirA_l1/subdirC_l2/fileD.seq\n']
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# github
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# base_data_dir: /home/runner/work/qiita_client/qiita_client/qiita-dev/qiita_db/support_files/test_data/
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# prefix: /home/runner/localFetch
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# actual files after fetch
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# @@@@@@@@@@@ STEFAN present: /home/runner/localFetch/home/runner/work/qiita_client/qiita_client/qiita-dev/qiita_db/support_files/test_data/job/2_test_folder/job/2_test_folder/testdir/fileA.txt
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# @@@@@@@@@@@ STEFAN present: /home/runner/localFetch/home/runner/work/qiita_client/qiita_client/qiita-dev/qiita_db/support_files/test_data/job/2_test_folder/job/2_test_folder/testdir/subdirB_l1/fileE.sff
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# @@@@@@@@@@@ STEFAN present: /home/runner/localFetch/home/runner/work/qiita_client/qiita_client/qiita-dev/qiita_db/support_files/test_data/job/2_test_folder/job/2_test_folder/testdir/subdirA_l1/fileB.fna
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# @@@@@@@@@@@ STEFAN present: /home/runner/localFetch/home/runner/work/qiita_client/qiita_client/qiita-dev/qiita_db/support_files/test_data/job/2_test_folder/job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileD.seq
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# @@@@@@@@@@@ STEFAN present: /home/runner/localFetch/home/runner/work/qiita_client/qiita_client/qiita-dev/qiita_db/support_files/test_data/job/2_test_folder/job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileC.log
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# files at Main:
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# 'üüüüüüüü qiita filepath=/home/runner/work/qiita_client/qiita_client/qiita-dev/qiita_db/support_files/test_data/job/2_test_folder/testdir/fileA.txt\n',
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# 'üüüüüüüü qiita filepath=/home/runner/work/qiita_client/qiita_client/qiita-dev/qiita_db/support_files/test_data/job/2_test_folder/testdir/subdirB_l1/fileE.sff\n',
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# 'üüüüüüüü qiita filepath=/home/runner/work/qiita_client/qiita_client/qiita-dev/qiita_db/support_files/test_data/job/2_test_folder/testdir/subdirA_l1/fileB.fna\n',
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# 'üüüüüüüü qiita filepath=/home/runner/work/qiita_client/qiita_client/qiita-dev/qiita_db/support_files/test_data/job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileD.seq\n',
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# 'üüüüüüüü qiita filepath=/home/runner/work/qiita_client/qiita_client/qiita-dev/qiita_db/support_files/test_data/job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileC.log\n']
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# when fetching dir
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# <ZipInfo filename='job/2_test_folder/testdir/fileA.txt' filemode='?--S-wx-w-' external_attr=0x4000 file_size=9>,
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# <ZipInfo filename='job/2_test_folder/testdir/subdirB_l1/fileE.sff' filemode='?--S-wx-w-' external_attr=0x4000 file_size=5>,
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# <ZipInfo filename='job/2_test_folder/testdir/subdirA_l1/fileB.fna' filemode='?--S-wx-w-' external_attr=0x4000 file_size=10>,
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# <ZipInfo filename='job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileD.seq' filemode='?--S-wx-w-' external_attr=0x4000 file_size=4>,
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# <ZipInfo filename='job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileC.log' filemode='?--S-wx-w-' external_attr=0x4000 file_size=10>]
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# all_files
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# '- 9 /protected/job/2_test_folder/testdir/fileA.txt job/2_test_folder/testdir/fileA.txt\n',
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# '- 5 /protected/job/2_test_folder/testdir/subdirB_l1/fileE.sff job/2_test_folder/testdir/subdirB_l1/fileE.sff\n',
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# '- 10 /protected/job/2_test_folder/testdir/subdirA_l1/fileB.fna job/2_test_folder/testdir/subdirA_l1/fileB.fna\n',
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# '- 4 /protected/job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileD.seq job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileD.seq\n',
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# '- 10 /protected/job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileC.log job/2_test_folder/testdir/subdirA_l1/subdirC_l2/fileC.log\n']
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