@@ -144,6 +144,8 @@ def test_retrive_workflows(self):
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'rev_comp_mapping_barcodes' : 'True' , 'rev_comp' : 'False' ,
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'phred_quality_threshold' : '3' , 'barcode_type' : 'golay_12' ,
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'max_barcode_errors' : '1.5' , 'phred_offset' : 'auto' }],
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+ ['input_params_7_FASTQ | per_sample_FASTQ' , 1 ,
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+ 'FASTQ | per_sample_FASTQ' ],
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['output_params_7_demultiplexed | Demultiplexed' , 1 ,
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'demultiplexed | Demultiplexed' ],
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['params_8' , 3 , 'Pick closed-reference OTUs' , 'Defaults' , {
@@ -152,7 +154,7 @@ def test_retrive_workflows(self):
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'sortmerna_coverage' : '0.97' , 'threads' : '1' }],
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['output_params_8_OTU table | BIOM' , 3 , 'OTU table | BIOM' ]])
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exp [0 ]['edges' ].extend ([
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- ['input_params_1_FASTQ ' , 'params_7' ],
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+ ['input_params_7_FASTQ | per_sample_FASTQ ' , 'params_7' ],
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['params_7' , 'output_params_7_demultiplexed | Demultiplexed' ],
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['output_params_7_demultiplexed | Demultiplexed' , 'params_8' ],
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['params_8' , 'output_params_8_OTU table | BIOM' ]])
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