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addressing @mestaki comments
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qiita_pet/static/js/networkVue.js

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@@ -1147,7 +1147,14 @@ Vue.component('processing-graph', {
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'<td rowspan="2">&nbsp;&nbsp;&nbsp;</td>' +
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'<td rowspan="2" align="center">' +
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'<a class="btn btn-success form-control" id="add-default-workflow"><span class="glyphicon glyphicon-flash"></span> Add Default Workflow</a>' +
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"<br/><a href='https://qiita.ucsd.edu/workflows/' target='_blank'>What's a Default Workflow?</a>" +
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"<br/><br/><a href='https://qiita.ucsd.edu/workflows/' target='_blank'> "+
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'<svg xmlns="http://www.w3.org/2000/svg" width="16" height="16" fill="currentColor" class="bi bi-exclamation-triangle" viewBox="0 0 16 16">' +
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'<path d="M7.938 2.016A.13.13 0 0 1 8.002 2a.13.13 0 0 1 .063.016.146.146 0 0 1 .054.057l6.857 11.667c.036.06.035.124.002.183a.163.163 0 0 1-.054.06.116.116 0 0 ' +
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'1-.066.017H1.146a.115.115 0 0 1-.066-.017.163.163 0 0 1-.054-.06.176.176 0 0 1 .002-.183L7.884 2.073a.147.147 0 0 1 .054-.057zm1.044-.45a1.13 1.13 0 0 0-1.96 0L.165 ' +
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'13.233c-.457.778.091 1.767.98 1.767h13.713c.889 0 1.438-.99.98-1.767L8.982 1.566z"></path>' +
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'<path d="M7.002 12a1 1 0 1 1 2 0 1 1 0 0 1-2 0zM7.1 5.995a.905.905 0 1 1 1.8 0l-.35 3.507a.552.552 0 0 1-1.1 0L7.1 5.995z"></path>' +
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'</svg>' +
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" Important note about Default Workflow</a>" +
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'</td>' +
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'</tr>' +
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qiita_pet/templates/workflows.html

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@@ -68,16 +68,17 @@ <h3>Recommended Default Workflows</h3>
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<div class="col-sm-10">
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In this page you will find our recommendations on how to processes each data type available in Qiita and the minimum processing requirements to make your data public.
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<br/><br/>
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For convenience, there is a "Add Default Workflow" button on each preparation, that will allow you to add all this steps to
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your raw data; however, all data is different and some of these steps will not work with it so we recommend checking that at least
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the initial steps work for your data. An example of this, for target gene we assume you are uploading raw multiplexed EMP data with
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reversed barcodes in your mapping file and index sequence file (EMP default). If that specific step doesn't apply to your data, you
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can add and run whatever processing steps makes the most sense to your data and then add the rest of the steps by using that button.
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For convenience, there is an "Add Default Workflow" button for each preparation that will add the recommended workflow steps for your raw data which then you can process.
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It is important to note however that some steps it this default workflow will not work with all raw data; for example, for target gene the workflow is based on the
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default Earth Microbiome Project protocol and so assumes the uploaded data are multiplexed sequences with the reversed barcodes in your mapping file and index sequence
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file (<a href="https://earthmicrobiome.org/protocols-and-standards/" target="_blank">see here</a> for more details). Thus, if the protocol does not apply to your data
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you can still use the Default Workflow, however, you should first manually process your data using the appropriate steps until you have a defined step; in our example,
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demultiplexed your reads. After demultiplexing the Default Workflow is safe to use with any protocol.
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<br/><br/>
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By the way, if you have already performed one of the processes in this pipeline, the button "Add Default Workflow" will not re-run that step but instead will
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run any other steps that havehas not been completed.
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If you have already manually performed one of the processing steps in the Defaul Workflow pipeline, the "Add Default Workflow" button will not re-select those steps but
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instead will only select any remaining steps that have not been completed. You can also add additional workflows on top of the recommended Default Workflow at any time.
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<br/><br/>
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Note that this is not a full inclusive list of data types accepted by Qiita but those that have a <u>defined</u> workflow.
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Note that this is not a full inclusive list of data types accepted by Qiita but only those that have a defined workflow.
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</div>
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</div>
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<h5>Hover on the spheres to get more information</h5>

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