Merge pull request #3168 from antgonza/2021.11

2021.11

Author: charles-cowart

CHANGELOG.md

@@ -1,5 +1,22 @@
 # Qiita changelog
 
+Version 2021.11
+---------------
+
+* Upgrading PostgreSQL from 9.5 to 13.4 as 9.5 is no longer supported
+* Updated SortMeRNA within qt-meta to filter RNA reads to run as job arrays to speed up processing. A full NovaSeq run will now take ~15hrs vs. ~161hrs.
+* Added qiime2.2021.11 to the system; which updated these plugins: qp-qiime2, qtp-biom, qtp-diversity, qtp-visualization.
+* Jobs no longer need to be linked to studies or analyses; this allows us to create general purpose jobs like "admin like" jobs that can be fully traced in Qiita.
+* Added a new user level: "wet-lab admin" so they can start "admin like" jobs in the system without having to be an actual admin.
+* Added a new plugin: "qp-knight-lab-processing" that provides the general Knight Lab sequence processing: from BCL to per_sample_FASTQ to the upload folders in Qiita.
+* Added "Oxford_Nanopore" as a valid "platform" with "GridION" as valid "instrument_model" to the system; this allows submission of this data to EBI-ENA.
+* Allow chucked download of metadata files in analyses; this allows to process large meta-analysis (like those for The Microsetta Initiative) without worker blockage.
+* Added to the qp-qiime2 plugin the possibility of filtering tables based on system available "FeatureData[Sequence]"; to start we added 90/100/150 bps bloom tables.
+* Now we can instantiate a study via their title (Study.from_title); this will facilitate orchestration with qebil.
+* Speed up Study listing for admins and general users; the admin study display came down from 20 to 2 seconds.  
+* Fixed the following issues: [3142](https://github.com/qiita-spots/qiita/issues/3142), [3149](https://github.com/qiita-spots/qiita/issues/3149), [3150](https://github.com/qiita-spots/qiita/issues/3150), [3119](https://github.com/qiita-spots/qiita/issues/3119), and [3160](https://github.com/qiita-spots/qiita/issues/3160).
+
+
 Version 2021.09
 ---------------
 

qiita_core/__init__.py

@@ -6,4 +6,4 @@
 # The full license is in the file LICENSE, distributed with this software.
 # -----------------------------------------------------------------------------
 
-__version__ = "2021.09"
+__version__ = "2021.11"

qiita_db/__init__.py

@@ -27,7 +27,7 @@
 from . import user
 from . import processing_job
 
-__version__ = "2021.09"
+__version__ = "2021.11"
 
 __all__ = ["analysis", "artifact",  "archive", "base", "commands",
            "environment_manager", "exceptions", "investigation", "logger",

qiita_pet/__init__.py

@@ -6,4 +6,4 @@
 # The full license is in the file LICENSE, distributed with this software.
 # -----------------------------------------------------------------------------
 
-__version__ = "2021.09"
+__version__ = "2021.11"

qiita_pet/handlers/api_proxy/__init__.py

@@ -38,7 +38,7 @@
 from .user import (user_jobs_get_req)
 from .util import check_access, check_fp
 
-__version__ = "2021.09"
+__version__ = "2021.11"
 
 __all__ = ['prep_template_summary_get_req', 'data_types_get_req',
            'study_get_req', 'sample_template_filepaths_get_req',

qiita_ware/__init__.py

@@ -6,4 +6,4 @@
 # The full license is in the file LICENSE, distributed with this software.
 # -----------------------------------------------------------------------------
 
-__version__ = "2021.09"
+__version__ = "2021.11"

setup.py

@@ -10,7 +10,7 @@
 from setuptools import setup
 from glob import glob
 
-__version__ = "2021.09"
+__version__ = "2021.11"
 
 
 classes = """