Merge pull request #369 from pymzml/feature/clean_build_artifacts

Save GSGW test output file to example_data

Author: MKoesters

.github/workflows/tox_ci.yml

@@ -21,7 +21,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python: ['3.8', '3.9', '3.10']
+        python: ['3.9', '3.10', '3.11']
     steps:
       - uses: actions/checkout@v4
       - name: Setup Python

README.rst

@@ -29,7 +29,7 @@ General information
 
 Module to parse mzML data in Python based on cElementTree
 
-Copyright 2010-2021 by:
+Copyright 2010-2024 by:
 
     | M. Kösters,
     | J. Leufken,

requirements.txt

@@ -1,6 +1,6 @@
 # Installation
 numpy
 plotly==4.12.0
-pynumpress==0.0.5
+pynumpress==0.0.9
 regex
-ms_deisotope==0.0.14
+ms_deisotope==0.0.14

tests/file_io_indexed_gzip_writer_test.py

@@ -30,7 +30,14 @@ def setUp(self):
     def tearDown(self):
         """ """
         self.Writer.close()
-        os.remove(os.path.abspath(os.path.join(".", "tests", "data", "unittest.mzml")))
+        try:
+            os.remove(os.path.abspath(os.path.join(".", "tests", "data", "unittest.mzml")))
+        except FileNotFoundError:
+            pass
+        try:
+            os.remove(os.path.abspath(os.path.join(".", "tests", "data", "unittest2.mzml")))
+        except FileNotFoundError:
+            pass
 
     def test_init(self):
         self.assertEqual(self.Writer.crc32, 0)
@@ -128,7 +135,9 @@ def test_add_data(self):
             "uncompressed",
             "CF_07062012_pH8_2_3A.mzML",
         )
-        self.Writer = GSGW(test_file, max_idx=80, max_idx_len=8, max_offset_len=8)
+        self.Writer = GSGW(test_file, max_idx=80, max_idx_len=8, max_offset_len=8, output_path=os.path.abspath(
+                os.path.join(".", "tests", "data", "unittest2.mzml")
+            ))
         self.Writer.add_data(test_string, "a")
         self.Writer.close()
         file = open(self.paths[0], "rb")