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README.md

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To-date, this script has been used to train a 3D CNN which predicts a tumour region-of-interest from 3D raster-scan optoacoustic mesoscopy (RSOM) images, found [here](https://github.com/psweens/Predict-RSOM-ROI/blob/main/README.md).
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## References
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To reference this repository please use the below citation.
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> [Quantification of vascular networks in photoacoustic mesoscopy](https://www.biorxiv.org/content/10.1101/2021.11.22.469541v1)<br>
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> Emma L. Brown, Thierry L. Lefebvre, Paul W. Sweeney et al.
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## Prerequisites
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The 3D CNN was trained using [Keras](https://keras.io/) using the following package versions:
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* Python 3.6.
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A package list for a Python environment has been provided and can be installed using the method described below.
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## References
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To reference this repository please use the below citation.
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> [Quantification of vascular networks in photoacoustic mesoscopy](https://www.biorxiv.org/content/10.1101/2021.11.22.469541v1)<br>
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> Emma L. Brown, Thierry L. Lefebvre, Paul W. Sweeney et al.
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## Installation
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The ROI package is compatible with Python3, and has been tested on Ubuntu 18.04 LTS.
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Other distributions of Linux, macOS, Windows should work as well.

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