Update gust_env.yaml

Author: pdimens

.other/gust_env.yaml

@@ -6,6 +6,7 @@ channels:
 dependencies:
   - _libgcc_mutex=0.1=conda_forge
   - _openmp_mutex=4.5=1_gnu
+  - _r-mutex=1.0.1=anacondar_1
   - aioeasywebdav=2.4.0=py39hf3d152e_1001
   - aiohttp=3.8.1=py39h3811e60_0
   - aiosignal=1.2.0=pyhd8ed1ab_0
@@ -21,17 +22,22 @@ dependencies:
   - bc=1.07.1=h516909a_0
   - bcftools=1.12=h45bccc9_1
   - bcrypt=3.2.0=py39h3811e60_2
+  - binutils_impl_linux-64=2.36.1=h193b22a_2
+  - binutils_linux-64=2.36=hf3e587d_1
+  - bioconductor-ggtree=3.2.0=r41hdfd78af_0
+  - bioconductor-treeio=1.18.0=r41hdfd78af_0
   - boto3=1.20.8=pyhd8ed1ab_0
   - botocore=1.23.8=pyhd8ed1ab_0
   - brotli=1.0.9=h7f98852_6
   - brotli-bin=1.0.9=h7f98852_6
   - brotlipy=0.7.0=py39h3811e60_1003
   - bwa=0.7.17=h5bf99c6_8
+  - bwidget=1.9.14=ha770c72_1
   - bzip2=1.0.8=h7f98852_4
   - c-ares=1.18.1=h7f98852_0
   - ca-certificates=2021.10.8=ha878542_0
   - cachetools=4.2.4=pyhd8ed1ab_0
-  - cairo=1.16.0=ha00ac49_1009
+  - cairo=1.16.0=h6cf1ce9_1008
   - certifi=2021.10.8=py39hf3d152e_1
   - cffi=1.15.0=py39h4bc2ebd_0
   - chardet=4.0.0=py39hf3d152e_2
@@ -43,6 +49,7 @@ dependencies:
   - configargparse=1.5.3=pyhd8ed1ab_0
   - connection_pool=0.0.3=pyhd3deb0d_0
   - cryptography=35.0.0=py39h95dcef6_2
+  - curl=7.80.0=h2574ce0_0
   - cycler=0.11.0=pyhd8ed1ab_0
   - datrie=0.8.2=py39h3811e60_3
   - docutils=0.18=py39hf3d152e_1
@@ -64,12 +71,17 @@ dependencies:
   - fribidi=1.0.10=h516909a_0
   - frozenlist=1.2.0=py39h3811e60_1
   - ftputil=5.0.2=pyhd8ed1ab_0
+  - gcc_impl_linux-64=9.4.0=h03d3576_11
+  - gcc_linux-64=9.4.0=h391b98a_1
   - gdk-pixbuf=2.42.6=h04a7f16_0
   - gettext=0.19.8.1=h73d1719_1008
+  - gfortran_impl_linux-64=9.4.0=h0003116_11
+  - gfortran_linux-64=9.4.0=hf0ab688_1
   - ghostscript=9.54.0=h9c3ff4c_1
   - giflib=5.2.1=h516909a_2
   - gitdb=4.0.9=pyhd8ed1ab_0
   - gitpython=3.1.24=pyhd8ed1ab_0
+  - gmp=6.2.1=h58526e2_0
   - google-api-core=2.2.2=pyhd8ed1ab_0
   - google-api-python-client=2.31.0=pyhd8ed1ab_0
   - google-auth=2.3.3=pyh6c4a22f_0
@@ -85,10 +97,12 @@ dependencies:
   - gsl=2.6=he838d99_2
   - gtk2=2.24.33=h539f30e_1
   - gts=0.7.6=h64030ff_2
-  - harfbuzz=3.1.1=hb4a5f5f_1
+  - gxx_impl_linux-64=9.4.0=h03d3576_11
+  - gxx_linux-64=9.4.0=h0316aca_1
+  - harfbuzz=3.1.1=h83ec7ef_0
   - htslib=1.12=h9093b5e_1
   - httplib2=0.20.2=pyhd8ed1ab_1
-  - icu=69.1=h9c3ff4c_0
+  - icu=68.2=h9c3ff4c_0
   - idna=3.1=pyhd3deb0d_0
   - imagemagick=7.0.11_14=pl5320hb118871_0
   - importlib-metadata=4.8.2=py39hf3d152e_0
@@ -101,6 +115,7 @@ dependencies:
   - jpeg=9d=h516909a_0
   - jsonschema=4.2.1=pyhd8ed1ab_0
   - jupyter_core=4.9.1=py39hf3d152e_1
+  - kernel-headers_linux-64=2.6.32=he073ed8_15
   - kiwisolver=1.3.2=py39h1a9c180_1
   - krb5=1.19.2=hcc1bbae_3
   - lcms2=2.12=hddcbb42_0
@@ -118,8 +133,9 @@ dependencies:
   - libedit=3.1.20191231=he28a2e2_2
   - libev=4.33=h516909a_1
   - libffi=3.4.2=h7f98852_5
+  - libgcc-devel_linux-64=9.4.0=hd854feb_11
   - libgcc-ng=11.2.0=h1d223b6_11
-  - libgd=2.3.3=h3cfcdeb_1
+  - libgd=2.3.3=h6ad9fb6_0
   - libgfortran-ng=11.2.0=h69a702a_11
   - libgfortran5=11.2.0=h5c6108e_11
   - libglib=2.70.1=h174f98d_0
@@ -133,40 +149,47 @@ dependencies:
   - libpng=1.6.37=hed695b0_2
   - libprotobuf=3.19.1=h780b84a_0
   - librsvg=2.52.4=hc3c00ef_0
+  - libsanitizer=9.4.0=h79bfe98_11
   - libsodium=1.0.18=h516909a_1
   - libsolv=0.7.19=h780b84a_5
   - libssh2=1.10.0=ha56f1ee_2
+  - libstdcxx-devel_linux-64=9.4.0=hd854feb_11
   - libstdcxx-ng=11.2.0=he4da1e4_11
   - libtiff=4.3.0=hf544144_1
   - libtool=2.4.6=h9c3ff4c_1008
   - libuuid=2.32.1=h14c3975_1000
   - libwebp=1.2.1=h3452ae3_0
   - libwebp-base=1.2.1=h7f98852_0
   - libxcb=1.13=h7f98852_1004
-  - libxml2=2.9.12=h885dcf4_1
+  - libxml2=2.9.12=h72842e0_0
   - libzlib=1.2.11=h36c2ea0_1013
   - logmuse=0.2.6=pyh8c360ce_0
   - lz4-c=1.9.3=h9c3ff4c_1
   - lzo=2.10=h516909a_1000
+  - make=4.3=hd18ef5c_1
   - markupsafe=2.0.1=py39h3811e60_1
   - matplotlib-base=3.5.0=py39h2fa2bec_0
   - more-itertools=8.11.0=pyhd8ed1ab_0
+  - mpi=1.0=openmpi
   - multidict=5.2.0=py39h3811e60_1
   - munkres=1.1.4=pyh9f0ad1d_0
+  - muscle=3.8.1551=h7d875b9_6
   - nbformat=5.1.3=pyhd8ed1ab_0
   - ncurses=6.2=h58526e2_4
   - networkx=2.6.3=pyhd8ed1ab_1
   - numpy=1.21.4=py39hdbf815f_0
   - oauth2client=4.1.3=py_0
   - olefile=0.46=pyh9f0ad1d_1
   - openjpeg=2.4.0=hb52868f_1
+  - openmpi=4.1.2=hbfc84c5_0
   - openssl=1.1.1l=h7f98852_0
   - packaging=21.3=pyhd8ed1ab_0
   - pandas=1.3.4=py39hde0f152_1
   - pango=1.48.10=h54213e6_2
   - parallel=20170422=pl5.22.0_0
   - paramiko=2.8.0=pyhd8ed1ab_0
   - pcre=8.45=h9c3ff4c_0
+  - pcre2=10.37=h032f7d1_0
   - peppy=0.31.2=pyhd8ed1ab_0
   - perl=5.22.0.1=0
   - pillow=8.4.0=py39ha612740_0
@@ -198,11 +221,78 @@ dependencies:
   - python=3.9.7=hb7a2778_3_cpython
   - python-dateutil=2.8.2=pyhd8ed1ab_0
   - python-irodsclient=1.0.0=pyhd8ed1ab_0
+  - python-tzdata=2021.5=pyhd8ed1ab_0
   - python_abi=3.9=2_cp39
   - pytz=2021.3=pyhd8ed1ab_0
+  - pytz-deprecation-shim=0.1.0.post0=py39hf3d152e_1
   - pyu2f=0.1.5=pyhd8ed1ab_0
   - pyyaml=6.0=py39h3811e60_3
+  - r-ape=5.5=r41h306847c_0
+  - r-aplot=0.1.1=r41hc72bb7e_0
+  - r-assertthat=0.2.1=r41hc72bb7e_2
+  - r-backports=1.4.0=r41hcfec24a_0
+  - r-base=4.1.1=hb67fd72_0
+  - r-brio=1.1.3=r41hcfec24a_0
+  - r-callr=3.7.0=r41hc72bb7e_0
+  - r-cli=3.1.0=r41h03ef668_0
+  - r-colorspace=2.0_2=r41hcfec24a_0
+  - r-crayon=1.4.2=r41hc72bb7e_0
+  - r-desc=1.4.0=r41hc72bb7e_0
+  - r-diffobj=0.3.5=r41hcfec24a_0
+  - r-digest=0.6.29=r41h03ef668_0
+  - r-dplyr=1.0.7=r41h03ef668_0
+  - r-ellipsis=0.3.2=r41hcfec24a_0
+  - r-evaluate=0.14=r41hc72bb7e_2
+  - r-fansi=0.4.2=r41hcfec24a_0
+  - r-farver=2.1.0=r41h03ef668_0
+  - r-generics=0.1.1=r41hc72bb7e_0
+  - r-ggfun=0.0.4=r41hc72bb7e_0
+  - r-ggplot2=3.3.5=r41hc72bb7e_0
+  - r-ggplotify=0.1.0=r41hc72bb7e_0
+  - r-glue=1.5.1=r41hcfec24a_0
+  - r-gridgraphics=0.5_1=r41hc72bb7e_0
+  - r-gtable=0.3.0=r41hc72bb7e_3
+  - r-isoband=0.2.5=r41h03ef668_0
+  - r-jsonlite=1.7.2=r41hcfec24a_0
+  - r-labeling=0.4.2=r41hc72bb7e_0
+  - r-lattice=0.20_45=r41hcfec24a_0
+  - r-lazyeval=0.2.2=r41hcfec24a_2
+  - r-lifecycle=1.0.1=r41hc72bb7e_0
+  - r-magrittr=2.0.1=r41hcfec24a_1
+  - r-mass=7.3_54=r41hcfec24a_0
+  - r-matrix=1.3_4=r41he454529_0
+  - r-mgcv=1.8_38=r41he454529_0
+  - r-munsell=0.5.0=r41hc72bb7e_1003
+  - r-nlme=3.1_153=r41h859d828_0
+  - r-patchwork=1.1.1=r41hc72bb7e_0
+  - r-pillar=1.6.4=r41hc72bb7e_0
+  - r-pkgconfig=2.0.3=r41hc72bb7e_1
+  - r-pkgload=1.2.4=r41h03ef668_0
+  - r-praise=1.0.0=r41hc72bb7e_1004
+  - r-processx=3.5.2=r41hcfec24a_0
+  - r-ps=1.6.0=r41hcfec24a_0
+  - r-purrr=0.3.4=r41hcfec24a_1
+  - r-r6=2.5.1=r41hc72bb7e_0
+  - r-rcolorbrewer=1.1_2=r41h785f33e_1003
+  - r-rcpp=1.0.7=r41h03ef668_0
+  - r-rematch2=2.1.2=r41hc72bb7e_1
+  - r-rlang=0.4.12=r41hcfec24a_0
+  - r-rprojroot=2.0.2=r41hc72bb7e_0
+  - r-rstudioapi=0.13=r41hc72bb7e_0
+  - r-scales=1.1.1=r41hc72bb7e_0
+  - r-testthat=3.1.0=r41h03ef668_0
+  - r-tibble=3.1.6=r41hcfec24a_0
+  - r-tidyr=1.1.4=r41h03ef668_0
+  - r-tidyselect=1.1.1=r41hc72bb7e_0
+  - r-tidytree=0.3.6=r41hc72bb7e_0
+  - r-utf8=1.2.2=r41hcfec24a_0
+  - r-vctrs=0.3.8=r41hcfec24a_1
+  - r-viridislite=0.4.0=r41hc72bb7e_0
+  - r-waldo=0.3.1=r41hc72bb7e_0
+  - r-withr=2.4.3=r41hc72bb7e_0
+  - r-yulab.utils=0.0.4=r41hc72bb7e_0
   - ratelimiter=1.2.0=py_1002
+  - raxml-ng=1.0.3=h32fcf60_0
   - readline=8.1=h46c0cb4_0
   - reproc=14.2.3=h7f98852_0
   - reproc-cpp=14.2.3=h9c3ff4c_0
@@ -212,9 +302,11 @@ dependencies:
   - s3transfer=0.5.0=pyhd8ed1ab_0
   - samtools=1.12=h9aed4be_1
   - scipy=1.7.2=py39hee8e79c_0
+  - sed=4.8=he412f7d_0
   - seqkit=2.1.0=h9ee0642_0
   - seqtk=1.3=h5bf99c6_3
   - setuptools=59.1.1=py39hf3d152e_0
+  - simplegeneric=0.8.1=py_1
   - simplejson=3.17.6=py39h3811e60_0
   - six=1.16.0=pyh6c4a22f_0
   - slacker=0.14.0=py_0
@@ -225,16 +317,19 @@ dependencies:
   - sqlite=3.36.0=h9cd32fc_2
   - stone=3.2.1=pyhd8ed1ab_0
   - stopit=1.1.2=py_0
+  - sysroot_linux-64=2.12=he073ed8_15
   - tabixpp=1.1.0=he28291e_6
   - tabulate=0.8.9=pyhd8ed1ab_0
   - tk=8.6.11=h27826a3_1
+  - tktable=2.10=hb7b940f_3
   - toml=0.10.2=pyhd8ed1ab_0
   - toposort=1.7=pyhd8ed1ab_0
   - tqdm=4.62.3=pyhd8ed1ab_0
   - traitlets=5.1.1=pyhd8ed1ab_0
   - typing-extensions=4.0.0=hd8ed1ab_0
   - typing_extensions=4.0.0=pyha770c72_0
   - tzdata=2021e=he74cb21_0
+  - tzlocal=4.1=py39hf3d152e_1
   - ubiquerg=0.6.1=pyh9f0ad1d_0
   - uritemplate=3.0.1=py_0
   - urllib3=1.26.7=pyhd8ed1ab_0