diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml index a829de2..81264cc 100644 --- a/.github/workflows/R-CMD-check.yaml +++ b/.github/workflows/R-CMD-check.yaml @@ -51,51 +51,4 @@ jobs: with: upload-snapshots: true -# name: test-coverage -# -# jobs: -# test-coverage: -# runs-on: ubuntu-latest -# env: -# GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} -# -# steps: -# - uses: actions/checkout@v3 -# -# - uses: r-lib/actions/setup-r@v2 -# with: -# use-public-rspm: true -# -# - uses: r-lib/actions/setup-r-dependencies@v2 -# with: -# needs: coverage -# -# - name: Setup -# run: | -# R CMD INSTALL . -# source shim_package.sh -# -# - name: Test coverage -# run: | -# covr::codecov( -# quiet = FALSE, -# clean = FALSE, -# install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package") -# ) -# shell: Rscript {0} -# -# - name: Show testthat output -# if: always() -# run: | -# ## -------------------------------------------------------------------- -# find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true -# shell: bash -# -# - name: Upload test results -# if: failure() -# uses: actions/upload-artifact@v3 -# with: -# name: coverage-test-failures -# path: ${{ runner.temp }}/package - \ No newline at end of file diff --git a/DESCRIPTION b/DESCRIPTION index e3c8dce..dddbebb 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: POMA Title: Tools for Omics Data Analysis -Version: 1.13.21 +Version: 1.13.22 Authors@R: c(person(given = "Pol", family = "Castellano-Escuder", diff --git a/NEWS.md b/NEWS.md index 8ca4519..8f1acb7 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# POMA 1.13.21 +# POMA 1.13.22 * New POMA theme and colorblind-friendly palette * Available sample normalization (sum and quantile) diff --git a/README.Rmd b/README.Rmd index e009884..7e1c01d 100644 --- a/README.Rmd +++ b/README.Rmd @@ -16,7 +16,7 @@ output: github_document | _BioC_ branch | Status | Version | Dependencies | Rank | |- |- |- |- |- | | [Release](http://bioconductor.org/packages/release/bioc/html/POMA.html) | [![Bioc release status](https://bioconductor.org/shields/build/release/bioc/POMA.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/POMA/) | [![BioC released version](https://img.shields.io/badge/release%20version-1.12.0-blue.svg)](https://www.bioconductor.org/packages/POMA) | [![Dependencies](http://bioconductor.org/shields/dependencies/release/POMA.svg)](http://bioconductor.org/packages/release/bioc/html/POMA.html#since) | [![Rank](http://www.bioconductor.org/shields/downloads/release/POMA.svg)](https://bioconductor.org/packages/stats/bioc/POMA) | -| [Devel](http://bioconductor.org/packages/devel/bioc/html/POMA.html) | [![Bioc devel status](https://bioconductor.org/shields/build/devel/bioc/POMA.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/POMA/) | [![BioC devel version](https://img.shields.io/badge/devel%20version-1.13.21-blue.svg)](https://bioconductor.org/packages/devel/bioc/html/POMA.html) | [![Dependencies](http://bioconductor.org/shields/dependencies/devel/POMA.svg)](http://bioconductor.org/packages/devel/bioc/html/POMA.html#since) | [![Rank](http://www.bioconductor.org/shields/downloads/devel/POMA.svg)](https://bioconductor.org/packages/stats/bioc/POMA) | +| [Devel](http://bioconductor.org/packages/devel/bioc/html/POMA.html) | [![Bioc devel status](https://bioconductor.org/shields/build/devel/bioc/POMA.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/POMA/) | [![BioC devel version](https://img.shields.io/badge/devel%20version-1.13.22-blue.svg)](https://bioconductor.org/packages/devel/bioc/html/POMA.html) | [![Dependencies](http://bioconductor.org/shields/dependencies/devel/POMA.svg)](http://bioconductor.org/packages/devel/bioc/html/POMA.html#since) | [![Rank](http://www.bioconductor.org/shields/downloads/devel/POMA.svg)](https://bioconductor.org/packages/stats/bioc/POMA) | diff --git a/README.md b/README.md index cd2cfdb..23a6ade 100644 --- a/README.md +++ b/README.md @@ -17,7 +17,7 @@ v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/li | *BioC* branch | Status | Version | Dependencies | Rank | |-------------------------------------------------------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------|-----------------------------------------------------------------------------------------------------------------------------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------|------------------------------------------------------------------------------------------------------------------------------| | [Release](http://bioconductor.org/packages/release/bioc/html/POMA.html) | [![Bioc release status](https://bioconductor.org/shields/build/release/bioc/POMA.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/POMA/) | [![BioC released version](https://img.shields.io/badge/release%20version-1.12.0-blue.svg)](https://www.bioconductor.org/packages/POMA) | [![Dependencies](http://bioconductor.org/shields/dependencies/release/POMA.svg)](http://bioconductor.org/packages/release/bioc/html/POMA.html#since) | [![Rank](http://www.bioconductor.org/shields/downloads/release/POMA.svg)](https://bioconductor.org/packages/stats/bioc/POMA) | -| [Devel](http://bioconductor.org/packages/devel/bioc/html/POMA.html) | [![Bioc devel status](https://bioconductor.org/shields/build/devel/bioc/POMA.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/POMA/) | [![BioC devel version](https://img.shields.io/badge/devel%20version-1.13.21-blue.svg)](https://bioconductor.org/packages/devel/bioc/html/POMA.html) | [![Dependencies](http://bioconductor.org/shields/dependencies/devel/POMA.svg)](http://bioconductor.org/packages/devel/bioc/html/POMA.html#since) | [![Rank](http://www.bioconductor.org/shields/downloads/devel/POMA.svg)](https://bioconductor.org/packages/stats/bioc/POMA) | +| [Devel](http://bioconductor.org/packages/devel/bioc/html/POMA.html) | [![Bioc devel status](https://bioconductor.org/shields/build/devel/bioc/POMA.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/POMA/) | [![BioC devel version](https://img.shields.io/badge/devel%20version-1.13.22-blue.svg)](https://bioconductor.org/packages/devel/bioc/html/POMA.html) | [![Dependencies](http://bioconductor.org/shields/dependencies/devel/POMA.svg)](http://bioconductor.org/packages/devel/bioc/html/POMA.html#since) | [![Rank](http://www.bioconductor.org/shields/downloads/devel/POMA.svg)](https://bioconductor.org/packages/stats/bioc/POMA) |