Repositories list

• Lung_scMultiomics_paper

  Public
  0•0•0•0•Updated May 29, 2025May 29, 2025

• ctwas

  Public
  causal TWAS (cTWAS)

  R

  •

  MIT License

  •13•43•6•0•Updated May 28, 2025May 28, 2025

• mirage

  Public
  Mixture model based Rare variant Analysis on Genes

  HTML

  •2•2•3•0•Updated Sep 19, 2024Sep 19, 2024

• mapgen

  Public
  R package to perform gene mapping using functionally-informed genetic fine mapping

  R

  •

  Other

  •3•7•2•0•Updated Aug 13, 2024Aug 13, 2024

• ctwas-paper

  Public
  Code related to analysis in the ctwas paper.

  HTML

  •0•4•1•0•Updated Jan 20, 2024Jan 20, 2024

• GSFA

  Public
  R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.

  factor-analysisscrna-seq-analysisdifferential-expression-analysis+ 2crispr-screen-analysissingle-cell

  C++

  •

  MIT License

  •2•20•5•1•Updated Oct 3, 2023Oct 3, 2023

• GSFA_paper

  Public
  Analysis code for the GSFA manuscript "A novel Bayesian factor analysis method improves detection of genes and biological processes affected by perturbations in single-cell CRISPR screening"

  R

  •2•2•1•0•Updated Sep 26, 2023Sep 26, 2023

• aFib_heart_atlas_mapgen_paper

  Public
  Code and data resources for aFib heart atlas paper

  R

  •1•5•0•0•Updated Jun 24, 2023Jun 24, 2023

• RSSp

  Public
  Polygenic RSS

  R

  •

  GNU General Public License v3.0

  •0•0•4•0•Updated Apr 1, 2021Apr 1, 2021

• lab-wiki

  Public
  Repository for documenting lab best practices

  Jupyter Notebook

  •2•4•8•0•Updated Jul 8, 2020Jul 8, 2020

• m6A-ASE

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Dec 18, 2019Dec 18, 2019

• sos-dockerfile-action

  Public
  github action for runing SOS

  Shell

  •

  MIT License

  •0•0•0•0•Updated Dec 17, 2019Dec 17, 2019