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    77 repositories

    • library

      Public
      A website for sharing QIIME 2 Plugins
      Svelte
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•2•0•Updated Mar 17, 2025Mar 17, 2025

    • q2cli

      Public
      Command line interface for QIIME 2
      hacktoberfestq2interface
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •24•19•14•2•Updated Mar 13, 2025Mar 13, 2025

    • q2galaxy

      Public
      Generate Galaxy tool descriptions automatically from QIIME 2 actions.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•19•10•1•Updated Mar 13, 2025Mar 13, 2025

    • q2-feature-table

      Public
      QIIME 2 plugin supporting operations on feature tables.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •39•2•24•2•Updated Mar 13, 2025Mar 13, 2025

    • q2templates

      Public
      Design template package for QIIME 2 Plugins
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •16•4•0•1•Updated Mar 13, 2025Mar 13, 2025

    • q2-vsearch

      Public
      vsearch plugin for QIIME 2
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •22•6•8•1•Updated Mar 13, 2025Mar 13, 2025

    • q2-vizard

      Public
      The first choice of wizard lizards for interactive, generalized microbiome data visualization!
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•1•6•2•Updated Mar 13, 2025Mar 13, 2025

    • q2-taxa

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •29•3•43•1•Updated Mar 13, 2025Mar 13, 2025

    • q2-sample-classifier

      Public
      QIIME 2 plugin for machine learning prediction of sample data.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •36•6•15•1•Updated Mar 13, 2025Mar 13, 2025

    • sphinx-ext-qiime2

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•2•2•1•Updated Mar 13, 2025Mar 13, 2025

    • q2-diversity

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •45•4•46•1•Updated Mar 13, 2025Mar 13, 2025

    • q2-stats

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•1•2•2•Updated Mar 13, 2025Mar 13, 2025

    • q2-fmt

      Public
      q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•4•7•2•Updated Mar 13, 2025Mar 13, 2025

    • q2dataflow

      Public
      Automatic generator of dataflow descriptor languages for QIIME 2 plugins.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•2•1•Updated Mar 13, 2025Mar 13, 2025

    • q2-quality-control

      Public
      A QIIME 2 plugin for quality control of sequence and feature data
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•4•8•3•Updated Mar 13, 2025Mar 13, 2025

    • q2-phylogeny

      Public
      Phylogenetic reconstruction, and operations on phylogenetic trees.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •19•4•2•1•Updated Mar 13, 2025Mar 13, 2025

    • q2-longitudinal

      Public
      QIIME 2 plugin for paired sample comparisons
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•9•30•2•Updated Mar 13, 2025Mar 13, 2025

    • q2-metadata

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•3•6•1•Updated Mar 13, 2025Mar 13, 2025

    • q2-deblur

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •22•2•7•2•Updated Mar 13, 2025Mar 13, 2025

    • q2-diversity-lib

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•0•6•1•Updated Mar 13, 2025Mar 13, 2025

    • q2-composition

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •27•6•7•2•Updated Mar 13, 2025Mar 13, 2025

    • q2-emperor

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •22•1•4•1•Updated Mar 13, 2025Mar 13, 2025

    • homepage

      Public
      QIIME 2 Homepage
      Astro
      •
      MIT License
      •0•0•0•0•Updated Mar 13, 2025Mar 13, 2025

    • q2-types

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •42•17•25•2•Updated Mar 11, 2025Mar 11, 2025

    • library-plugins

      Public
      Stores a list of the repos that are included in the QIIME 2 library
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•2•Updated Mar 11, 2025Mar 11, 2025

    • q2view

      Public
      A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•3•2•Updated Mar 10, 2025Mar 10, 2025

    • distributions

      Public
      Makefile
      •
      BSD 3-Clause "New" or "Revised" License
      •5•1•4•0•Updated Mar 9, 2025Mar 9, 2025

    • amplicon-docs

      Public
      Source for QIIME 2 amplicon documentation.
      Makefile
      •0•0•3•1•Updated Mar 7, 2025Mar 7, 2025

    • q2doc

      Public
      A MyST executable plugin for documenting QIIME 2 plugins.
      Python
      •
      Other
      •0•0•2•0•Updated Feb 26, 2025Feb 26, 2025

    • q2-feature-classifier

      Public
      QIIME 2 plugin supporting taxonomic classification
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •38•19•8•1•Updated Feb 20, 2025Feb 20, 2025