Repositories list

• pango-designation

  Public
  Repository for suggesting new lineages that should be added to the current scheme

  Jupyter Notebook

  •

  Other

  •101•1.1k•64•2•Updated Jun 2, 2025Jun 2, 2025

• lineages-website

  Public
  HTML

  •14•16•3•1•Updated Apr 15, 2025Apr 15, 2025

• pangolin

  Public
  Software package for assigning SARS-CoV-2 genome sequences to global lineages.

  Python

  •

  GNU General Public License v3.0

  •106•435•15•3•Updated Apr 1, 2025Apr 1, 2025

• pangolin-assignment

  Public
  The latest lineage assignments from pangolin.

  Python

  •

  GNU General Public License v3.0

  •2•8•1•0•Updated Mar 31, 2025Mar 31, 2025

• pangolin-data

  Public
  Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments

  PureBasic

  •

  GNU General Public License v3.0

  •2•30•5•0•Updated Mar 31, 2025Mar 31, 2025

• hedgehog

  Public
  Spikey SARS-CoV-2 sequence based lineage set assignment

  Python

  •

  GNU General Public License v3.0

  •3•4•0•1•Updated Oct 21, 2024Oct 21, 2024

• grinch

  Public
  global report investigating novel coronavirus haplotypes

  Python

  •

  GNU General Public License v3.0

  •2•6•3•2•Updated Sep 2, 2024Sep 2, 2024

• constellations

  Public
  Python

  •

  Other

  •17•43•3•1•Updated Nov 27, 2023Nov 27, 2023

• scorpio

  Public
  serious constellations of reoccurring phylogenetically-independent origin

  Python

  •

  GNU General Public License v3.0

  •4•39•6•0•Updated Oct 11, 2023Oct 11, 2023

• Sample_names

  Public
  0•0•0•0•Updated Oct 15, 2022Oct 15, 2022

• pangoLEARN

  Public
  Store of the trained model for pangolin to access.

  PureBasic

  •

  GNU General Public License v3.0

  •13•55•6•0•Updated Oct 4, 2022Oct 4, 2022

• quokka

  Public
  QUality Of Known Klusters Assessed

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated May 11, 2022May 11, 2022

• lineages-website-old

  Public
  CSS

  •

  Other

  •1•7•4•0•Updated Jul 8, 2021Jul 8, 2021

• pangoLEARN-training

  Public
  pipeline for training pangoLEARN model

  Python

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Feb 14, 2021Feb 14, 2021

• cov-support

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 3, 2021Feb 3, 2021