Repositories list

• GenPipes

  Public
  Python

  •

  GNU Lesser General Public License v3.0

  •0•5•2•0•Updated Nov 10, 2025Nov 10, 2025

• freezeman

  Public
  Freezer management & sample tracking system

  Python

  •1•9•2•6•Updated Nov 10, 2025Nov 10, 2025

• snv-benchmarking-dashboard

  Public
  Dashboard for SNV benchmarking results visualization

  R

  •0•0•0•0•Updated Nov 10, 2025Nov 10, 2025

• c3g_tools

  Public
  Tools used by GenPipes or as standalone (former mugqic_tools)

  Perl

  •0•1•0•0•Updated Nov 10, 2025Nov 10, 2025

• MoH_Automation

  Public
  Automation for MoH. It includes capabilities for file transfer, tracking, and genpipes, initiation.

  Python

  •0•0•0•0•Updated Nov 7, 2025Nov 7, 2025

• project_tracking_cli

  Public
  Python

  •

  GNU General Public License v3.0

  •0•1•1•0•Updated Nov 7, 2025Nov 7, 2025

• project_tracking

  Public
  Python

  •

  GNU General Public License v3.0

  •0•3•2•0•Updated Nov 7, 2025Nov 7, 2025

• GenPipes_Docs

  Public
  GenPipes Read the Docs repository

  Mermaid

  •5•22•15•0•Updated Nov 3, 2025Nov 3, 2025

• elastic-HPC

  Public
  HCL

  •1•1•0•0•Updated Oct 10, 2025Oct 10, 2025

• puppet-magic_castle

  Public
  Puppet Environment repo for Magic Castle - https://github.com/ComputeCanada/magic_castle

  Puppet

  •

  MIT License

  •28•0•0•0•Updated Oct 10, 2025Oct 10, 2025

• cit_scripts

  Public
  CIT scripts for GenPipes

  Shell

  •0•0•0•0•Updated Oct 10, 2025Oct 10, 2025

• epivar-browser

  Public
  Source code for the EpiVar browser, a web application to search for eQTL/epigenetic signal-associated variants and merge bigWig tracks by genotype.

  genomicsepigeneticsgenomics-visualization+ 1epigenomics

  JavaScript

  •

  GNU Lesser General Public License v3.0

  •0•2•0•0•Updated Sep 30, 2025Sep 30, 2025

• mEGAdata

  Public
  EGA submissions made easy

  Shell

  •0•0•0•0•Updated Sep 19, 2025Sep 19, 2025

• MultiQC_c3g

  Public
  MultiQC plugin specific to GenPipes and C3G reports

  HTML

  •0•0•0•0•Updated Sep 11, 2025Sep 11, 2025

• CPHI-automation

  Public
  Python

  •0•0•0•0•Updated Sep 10, 2025Sep 10, 2025

• monitor

  Public
  C3G Run Processing monitor (for reporting)

  Groovy

  •0•0•1•1•Updated Sep 4, 2025Sep 4, 2025

• Auto_NGS_Checkmate

  Public
  HTML

  •0•0•0•0•Updated Aug 25, 2025Aug 25, 2025

• PARPAL

  Public
  GZ - Kuzmin website

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

• web-app-template

  Public template
  0•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• k8s-opentofu-module

  Public
  Provision OpenStack resources for an HA K8S cluster using OpenTofu.

  HCL

  •0•0•0•0•Updated Jul 15, 2025Jul 15, 2025

• puppet-module-globus

  Public
  Globus deployment for MC on SD4H

  Ruby

  •

  Other

  •8•0•1•0•Updated Jun 13, 2025Jun 13, 2025

• triton

  Public
  TypeScript

  •0•0•4•1•Updated May 27, 2025May 27, 2025

• mhcut-browser

  Public
  Data browser web application for the MHcut project.

  JavaScript

  •

  GNU General Public License v3.0

  •1•0•0•1•Updated May 13, 2025May 13, 2025

• Template_Convertor

  Public
  MOH template conversion project

  Python

  •0•1•1•0•Updated Apr 3, 2025Apr 3, 2025

• magic_castle

  Public
  Terraform modules to replicate the HPC user experience in the cloud

  HCL

  •

  MIT License

  •44•0•0•0•Updated Mar 27, 2025Mar 27, 2025

• patch-it

  Public
  Shell

  •0•0•0•0•Updated Feb 27, 2025Feb 27, 2025

• genpipes_in_a_container

  Public
  Shell

  •1•5•6•0•Updated Jan 24, 2025Jan 24, 2025

• ops_tools

  Public
  Operational tools for production or hacking

  Python

  •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

• CoVSeQ_tools

  Public
  R

  •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

• pipes_stats

  Public
  JavaScript

  •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024