@@ -140,49 +140,52 @@ distinct ID.
140140
141141## Transcripts
142142
143- ` transcripts(contig=None, strand=None) `
144- : returns list of Transcript objects for all transcript entries in the
145- Ensembl database, optionally restricted to a particular contig or strand.
143+ <dl >
144+ <dt >`transcripts(contig=None, strand=None)`</dt >
145+ <dd >Returns a list of Transcript objects for all transcript entries in the
146+ Ensembl database, optionally restricted to a particular contig or strand.</dd >
146147
147- ` transcript_by_id(transcript_id) `
148- : construct Transcript object for given Ensembl transcript ID (e.g. "ENST00000369985")
148+ < dt > `transcript_by_id(transcript_id)`</ dt >
149+ < dd >Construct a Transcript object for given Ensembl transcript ID (e.g. "ENST00000369985")</ dd >
149150
150- ` transcripts_by_name(transcript_name) `
151- : returns list of Transcript objects for every transcript matching the given name.
151+ < dt > `transcripts_by_name(transcript_name)`</ dt >
152+ < dd >Returns a list of Transcript objects for every transcript matching the given name.</ dd >
152153
153- ` transcript_names(contig=None, strand=None) `
154- : all transcript names in the annotation database
154+ < dt > `transcript_names(contig=None, strand=None)`</ dt >
155+ < dd >Returns all transcript names in the annotation database.</ dd >
155156
156- ` transcript_ids(contig=None, strand=None) `
157- : returns all transcript IDs in the annotation database
157+ < dt > `transcript_ids(contig=None, strand=None)`</ dt >
158+ < dd >Returns all transcript IDs in the annotation database.</ dd >
158159
159- ` transcript_ids_of_gene_id(gene_id) `
160- : return IDs of all transcripts associated with given gene ID
160+ < dt > `transcript_ids_of_gene_id(gene_id)`</ dt >
161+ < dd >Return IDs of all transcripts associated with given gene ID.</ dd >
161162
162- ` transcript_ids_of_gene_name(gene_name) `
163- : return IDs of all transcripts associated with given gene name
163+ < dt > `transcript_ids_of_gene_name(gene_name)`</ dt >
164+ < dd >Return IDs of all transcripts associated with given gene name.</ dd >
164165
165- ` transcript_ids_of_transcript_name(transcript_name) `
166- : find all Ensembl transcript IDs with the given name
167-
168- ` transcript_ids_of_exon_id(exon_id) `
169- : return IDs of all transcripts associatd with given exon ID
166+ <dt >`transcript_ids_of_transcript_name(transcript_name)`</dt >
167+ <dd >Find all Ensembl transcript IDs with the given name.</dd >
170168
169+ <dt >`transcript_ids_of_exon_id(exon_id)`</dt >
170+ <dd >Return IDs of all transcripts associatd with given exon ID.</dd >
171+ </d >
171172
172173## Exons
173174
174- ` exon_ids(contig=None, strand=None) `
175- : returns list of exons IDs in the annotation database, optionally restricted
176- by the given chromosome and strand
175+ <dl >
176+ <dt >`exon_ids(contig=None, strand=None)`</dt >
177+ <dd >Returns a list of exons IDs in the annotation database, optionally restricted
178+ by the given chromosome and strand.</dd >
177179
178- ` exon_ids_of_gene_id(gene_id) `
179- : returns list of exon IDs associated with a given gene ID
180+ < dt > `exon_ids_of_gene_id(gene_id)`</ dt >
181+ < dd >Returns a list of exon IDs associated with a given gene ID.</ dd >
180182
181- ` exon_ids_of_gene_name(gene_name) `
182- : returns list of exon IDs associated with a given gene name
183+ < dt > `exon_ids_of_gene_name(gene_name)`</ dt >
184+ < dd >Returns a list of exon IDs associated with a given gene name.</ dd >
183185
184- ` exon_ids_of_transcript_id(transcript_id) `
185- : returns list of exon IDs associated with a given transcript ID
186+ < dt > `exon_ids_of_transcript_id(transcript_id)`</ dt >
187+ < dd >Returns a list of exon IDs associated with a given transcript ID.</ dd >
186188
187- ` exon_ids_of_transcript_name(transcript_name) `
188- : returns list of exon IDs associated with a given transcript name
189+ <dt >`exon_ids_of_transcript_name(transcript_name)`</dt >
190+ <dd >Returns a list of exon IDs associated with a given transcript name.</dd >
191+ </dl >
0 commit comments