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lines changed Original file line number Diff line number Diff line change @@ -65,7 +65,7 @@ The acquisition tab makes recording a time lapse of any number of views simple:
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## Acquisition Controls
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- {% include image src="spimgui -acquiring-annotated.png" width="100%" caption="" %}
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+ {% include image src="Spimgui -acquiring-annotated.png" width="100%" caption="" %}
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- (1) Positions List
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This table shows the list of stacks of images to acquire. Each time point will consist of the images recorded at each position in this list (as well as the Z slices described by the MATLAB range in the final column).
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+ ---
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+ ---
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+ # OpenSPIM News
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+ - [ 2015-10-16 Brightfield Illumination by Michael Redd] ( 2015-10-16_Brightfield_illumination_by_Michael_Redd )
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+ - [ 2014-08-15 EMBO practical course on Light Sheet Microscopy] ( 2014-08-15_EMBO_practical_course_on_light_sheet_microscopy )
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+ - [ 2014-04-22_Multiview_deconvolution] ( 2014-04-22_Multiview_deconvolution )
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+ - [ 2014-04-11_Sample_prep_for_Zebrafish_embryo] ( 2014-04-11_Sample_prep_for_Zebrafish_embryo )
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+ - [ 2013-09-28_HFSP_Success_Story_about_the_OpenSPIM_platform] ( 2013-09-28_HFSP_Success_Story_about_the_OpenSPIM_platform )
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+ - [ 2013-07-05_ -_ OpenSPIM_at_MAMED_course] ( 2013-07-05_-_OpenSPIM_at_MAMED_course )
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+ - [ 2013-06-18_ -_ SPIMage_processing_tutorials] ( 2013-06-18_-_SPIMage_processing_tutorials )
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+ - [ 2013-06-10_ -_ The_OpenSPIM_paper_is_out] ( 2013-06-10_-_The_OpenSPIM_paper_is_out )
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+ - [ 2013-05-03_ -_ Recipes_for_SPIM_Analysis_on_a_cluster] ( 2013-05-03_-_Recipes_for_SPIM_Analysis_on_a_cluster )
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+ - [ 2013-04-07_ -_ Open_SPIM_in_South_Africa] ( 2013-04-07_-_Open_SPIM_in_South_Africa )
Original file line number Diff line number Diff line change @@ -92,7 +92,7 @@ The table below lists the parts used by the OpenSPIM for brains setup built by M
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<td >
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<a href =" https://github.com/openspim/openspim-parts/blob/master/Chambers/Dry_Objectives_Chamber_and_Holder/Metal_Holder.pdf " >Metal_Holder.pdf</a ><br />
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<a href =" https://github.com/openspim/openspim-parts/blob/master/Chambers/Dry_Objectives_Chamber_and_Holder/Metal_Holder.step " >Metal_Holder.step</a ></td >
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- <td align =" center " ><img src =" images/holder .PNG " width =40% ></td >
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+ <td align =" center " ><img src =" images/Holder .PNG " width =40% ></td >
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<td align =" center " >1</td >
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<td ></td >
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</tr >
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<a href =" http://www.vortranlaser.com/ " >VersaLase</a >
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</td >
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<td align =" center " >
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- <img src =" images/Laser_cube.jpg " width =" 70% " ><br />
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- <img src =" images/versa -final-sm.jpg " width =" 70% " >
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+ <img src =" images/Laser_cube.jpeg " width =" 70% " ><br />
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+ <img src =" images/Versa -final-sm.jpg " width =" 70% " >
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</td >
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<td align =" center " >1</td >
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<td align =" center " >~7000</td >
Original file line number Diff line number Diff line change @@ -74,11 +74,11 @@ Feel free to edit this page with information about your system! (You will need a
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{% include image src="20170621_114544.jpg" width="70%" caption="Fig. 2 LED tube light for brightfield" %}
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- {% include image src="adjustable_foot_smaller .jpg" width="70%" caption="Fig. 3 Adjustable foot to align detection arm" %}
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+ {% include image src="Adjustable_foot_smaller .jpg" width="70%" caption="Fig. 3 Adjustable foot to align detection arm" %}
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{% include image src="Illumination.png" width="70%" caption="Fig. 4 Schematic for illumination between acquisitions" %}
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- {% include image src="sample_holder .png" width="70%" caption="Fig. 5 3D-printed sample holder" %}
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+ {% include image src="Sample_holder .png" width="70%" caption="Fig. 5 3D-printed sample holder" %}
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# Cambridge, UK, MRC LMB
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Original file line number Diff line number Diff line change @@ -51,6 +51,7 @@ <h3>Content</h3>
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< div class ='pBody '>
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< ul >
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< li > < a href ="/index "> Home</ a > </ li >
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+ < li > < a href ="/News "> News</ a > </ li >
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< li > < a href ="/Table_of_parts "> Parts list</ a > </ li >
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< li > < a href ="/Step_by_step_assembly "> Assembly</ a > </ li >
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< li > < a href ="/Operation "> Operation</ a > </ li >
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---
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---
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- <div cellspacing =" 5 " style =" width : 31em ; font-size : 90% ; text-align :left ; float :right ; position :relative ; border :2px ; border-style :solid ;" >
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- ### News
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- * [ 2015-10-16 Brightfield illumination by Michael Redd] ( /2015-10-16_Brightfield_illumination_by_Michael_Redd )
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- * [ 2014-08-15 EMBO practical course on light sheet microscopy] ( /2014-08-15_EMBO_practical_course_on_light_sheet_microscopy )
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- * [ 2014-04-22 Multiview deconvolution] ( /2014-04-22_Multiview_deconvolution )
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- * [ 2014-04-11 Sample prep for Zebrafish embryo] ( /2014-04-11_Sample_prep_for_Zebrafish_embryo )
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- </div >
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## The Idea
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OpenSPIM is an * Open Access* platform for applying and enhancing ** Selective Plane Illumination Microscopy** (* SPIM* ).
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