Skip to content

Commit 6298b68

Browse files
author
Gabriella Turek
committed
Added news page and fixed missing images
1 parent 0b8eec3 commit 6298b68

8 files changed

+21
-17
lines changed

Diff for: Acquisition.md

+1-1
Original file line numberDiff line numberDiff line change
@@ -65,7 +65,7 @@ The acquisition tab makes recording a time lapse of any number of views simple:
6565

6666
## Acquisition Controls
6767

68-
{% include image src="spimgui-acquiring-annotated.png" width="100%" caption="" %}
68+
{% include image src="Spimgui-acquiring-annotated.png" width="100%" caption="" %}
6969

7070
- (1) Positions List
7171
This table shows the list of stacks of images to acquire. Each time point will consist of the images recorded at each position in this list (as well as the Z slices described by the MATLAB range in the final column).

Diff for: News.md

+14
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,14 @@
1+
---
2+
---
3+
# OpenSPIM News
4+
5+
- [2015-10-16 Brightfield Illumination by Michael Redd](2015-10-16_Brightfield_illumination_by_Michael_Redd)
6+
- [2014-08-15 EMBO practical course on Light Sheet Microscopy](2014-08-15_EMBO_practical_course_on_light_sheet_microscopy)
7+
- [2014-04-22_Multiview_deconvolution](2014-04-22_Multiview_deconvolution)
8+
- [2014-04-11_Sample_prep_for_Zebrafish_embryo](2014-04-11_Sample_prep_for_Zebrafish_embryo)
9+
- [2013-09-28_HFSP_Success_Story_about_the_OpenSPIM_platform](2013-09-28_HFSP_Success_Story_about_the_OpenSPIM_platform)
10+
- [2013-07-05_-_OpenSPIM_at_MAMED_course](2013-07-05_-_OpenSPIM_at_MAMED_course)
11+
- [2013-06-18_-_SPIMage_processing_tutorials](2013-06-18_-_SPIMage_processing_tutorials)
12+
- [2013-06-10_-_The_OpenSPIM_paper_is_out](2013-06-10_-_The_OpenSPIM_paper_is_out)
13+
- [2013-05-03_-_Recipes_for_SPIM_Analysis_on_a_cluster](2013-05-03_-_Recipes_for_SPIM_Analysis_on_a_cluster)
14+
- [2013-04-07_-_Open_SPIM_in_South_Africa](2013-04-07_-_Open_SPIM_in_South_Africa)

Diff for: Setup_Extensions_and_Modifications.md

+1-1
Original file line numberDiff line numberDiff line change
@@ -92,7 +92,7 @@ The table below lists the parts used by the OpenSPIM for brains setup built by M
9292
<td>
9393
<a href="https://github.com/openspim/openspim-parts/blob/master/Chambers/Dry_Objectives_Chamber_and_Holder/Metal_Holder.pdf">Metal_Holder.pdf</a><br/>
9494
<a href="https://github.com/openspim/openspim-parts/blob/master/Chambers/Dry_Objectives_Chamber_and_Holder/Metal_Holder.step">Metal_Holder.step</a></td>
95-
<td align="center"><img src="images/holder.PNG" width=40%></td>
95+
<td align="center"><img src="images/Holder.PNG" width=40%></td>
9696
<td align="center">1</td>
9797
<td></td>
9898
</tr>

Diff for: Table_of_parts.md

+2-2
Original file line numberDiff line numberDiff line change
@@ -49,8 +49,8 @@ Whichever wavelength &amp; mW is necessary for your experiments.<br/>
4949
<a href="http://www.vortranlaser.com/">VersaLase</a>
5050
</td>
5151
<td align="center">
52-
<img src="images/Laser_cube.jpg‎" width="70%"><br/>
53-
<img src="images/versa-final-sm.jpg" width="70%">
52+
<img src="images/Laser_cube.jpeg" width="70%"><br/>
53+
<img src="images/Versa-final-sm.jpg" width="70%">
5454
</td>
5555
<td align="center">1</td>
5656
<td align="center">~7000</td>

Diff for: Who_has_an_OpenSPIM.md

+2-2
Original file line numberDiff line numberDiff line change
@@ -74,11 +74,11 @@ Feel free to edit this page with information about your system! (You will need a
7474

7575
{% include image src="20170621_114544.jpg" width="70%" caption="Fig. 2 LED tube light for brightfield" %}
7676

77-
{% include image src="adjustable_foot_smaller.jpg" width="70%" caption="Fig. 3 Adjustable foot to align detection arm" %}
77+
{% include image src="Adjustable_foot_smaller.jpg" width="70%" caption="Fig. 3 Adjustable foot to align detection arm" %}
7878

7979
{% include image src="Illumination.png" width="70%" caption="Fig. 4 Schematic for illumination between acquisitions" %}
8080

81-
{% include image src="sample_holder.png" width="70%" caption="Fig. 5 3D-printed sample holder" %}
81+
{% include image src="Sample_holder.png" width="70%" caption="Fig. 5 3D-printed sample holder" %}
8282

8383
# Cambridge, UK, MRC LMB
8484

Diff for: _layouts/default.html

+1
Original file line numberDiff line numberDiff line change
@@ -51,6 +51,7 @@ <h3>Content</h3>
5151
<div class='pBody'>
5252
<ul>
5353
<li><a href="/index">Home</a></li>
54+
<li><a href="/News">News</a></li>
5455
<li><a href="/Table_of_parts">Parts list</a></li>
5556
<li><a href="/Step_by_step_assembly">Assembly</a></li>
5657
<li><a href="/Operation">Operation</a></li>
File renamed without changes.

Diff for: index.md

-11
Original file line numberDiff line numberDiff line change
@@ -1,16 +1,5 @@
11
---
22
---
3-
<div cellspacing="5" style="width: 31em; font-size: 90%; text-align:left; float:right; position:relative; border:2px; border-style:solid;">
4-
5-
### News
6-
7-
* [2015-10-16 Brightfield illumination by Michael Redd](/2015-10-16_Brightfield_illumination_by_Michael_Redd)
8-
* [2014-08-15 EMBO practical course on light sheet microscopy](/2014-08-15_EMBO_practical_course_on_light_sheet_microscopy)
9-
* [2014-04-22 Multiview deconvolution](/2014-04-22_Multiview_deconvolution)
10-
* [2014-04-11 Sample prep for Zebrafish embryo](/2014-04-11_Sample_prep_for_Zebrafish_embryo)
11-
12-
</div>
13-
143
## The Idea
154

165
OpenSPIM is an *Open Access* platform for applying and enhancing **Selective Plane Illumination Microscopy** (*SPIM*).

0 commit comments

Comments
 (0)