Skip to content

Issues: odelaneau/shapeit5

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

50 Open 52 Closed
50 Open 52 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Working with SVs: preserve INFO/END field after phase_common
#72 opened Nov 26, 2023 by dtaliun
Undefined reference to curl
#71 opened Nov 18, 2023 by PradnyaP02
1
Columns for .flipsAndSwitches.txt.gz
#70 opened Nov 17, 2023 by karinkumar
1
Docker image - Static binaries shouldn't need host libraries
#67 opened Oct 27, 2023 by pettyalex
3
SER meaurement - merge multiallelic sites first?
#66 opened Oct 24, 2023 by JosephLalli
file extention not recognized
#65 opened Oct 18, 2023 by marlmatos
8
B37 chunks
#62 opened Sep 7, 2023 by BEFH
Reproducible results
#58 opened Aug 27, 2023 by zhangpicb
5
Rare phasing error: Assertion V.vec_full[vt]->type == VARTYPE_SCAF failed
#52 opened Aug 1, 2023 by mvvugt
3
Silent imputation of missing variants
#51 opened Jul 28, 2023 by JosephLalli
2
How can I solve "makefile:135: recipe for target 'obj/haplotype_segment_double.o' failed"
#50 opened Jul 21, 2023 by jpbreed90
Phasing WES Workflow
#49 opened Jul 19, 2023 by marcus-tutert
phase_common error when output provided without a correct extension
#48 opened Jul 18, 2023 by freeseek
3
Phase_common: AC field is needed in file
#45 opened Jul 3, 2023 by AkshajD
4
Rare variants with reference scaffold
#43 opened Jul 1, 2023 by JosephLalli
using phase_common_static: loosing phase with bcftools convert
#41 opened Jun 22, 2023 by droeatumn
3
ligater_initialise.cpp typo?
#40 opened Jun 17, 2023 by schnabelr
1
UKB WGS: possible to phase per independent block instead of per chromosome?
#35 opened Jun 1, 2023 by WeiCSong
2
[W::bcf_record_check] Bad BCF record error when phase_rare indexes malformed output
#34 opened May 31, 2023 by BEFH
11
phase_rare_static: Assertion `!isnan(GRvar_genotypes[vr][tidx].prob)' failed.
#33 opened May 19, 2023 by schnabelr
15
Installation using docker
#31 opened May 10, 2023 by yangwukaidi
3
How are the chunking files made? Can I chunk by samples?
#30 opened May 8, 2023 by BEFH
4
Segmentation faultng... | phase_common
#26 opened Apr 22, 2023 by FranjoIM
3
phase_common problem.
#22 opened Apr 7, 2023 by jpbreed90
14
Assertion `GRvar_genotypes[vr][tidx].prob >= 0.0f' failed, when phasing rare alleles
#20 opened Apr 4, 2023 by TanguyLallemand
10
ProTip! Find all open issues with in progress development work with linked:pr.