Play to Learn Bio Data Processing

All bio data from the field are processed for analysis here.

NO PII IS EXPOSED IN THIS REPOSITORY.

Setup

In R, run

renv::restore()

This repository only uses a handful of necessary packages, so this step is pretty quick. Notably, this repo uses

• tidytable
• stringi
• duckdb

which handle most of the legwork.

Running pipeline

To execute the pipeline, run

# These environment variables need only be set once per R session
# Sys.setenv(BOX_ROOT = "C:/Users/youruser/Box") <-- This might be able to be detected automatically
Sys.setenv(SYNOLOGY_ROOT = "T:/Where/To/Save/Intermediate/Files")

# This can be run as many times as you'd like per R session
targets::tar_make()

in R.