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Small changes to biocore ideas
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2016/ideas-list-biocore.md

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# biocore's Idea Page
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To be clear, your own ideas are most welcome!
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## A general purpose next-generation sequence pre-processor for QIIME 2
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Various quality control and other sequence "pre-processing" steps are required of microbiome "next-generation" sequencing data before it can used in a QIIME analysis. We propose the development of a general purpose sequence pre-processor that would be developed as a [QIIME 2 plugin](https://github.com/biocore/qiime2). This is described in detail in an issue [here](https://github.com/biocore/qiime/issues/1954).
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| **Intensity** | Trivial - Easy - Moderate - Hard |
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| **Involves** | |
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| **Mentors** | [@foo][], [@bar][] |
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### Technical Details
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### Open Source Development Experience
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### First steps
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## A scikit-bio-based bioinformatics file format converter
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In bioinformatics, there are many defined file formats that represent very similar data. scikit-bio has a powerful I/O framework that enables users to load diverse formats into their relevant in-memory representations, regardless on input file format. It would be useful for many bioinformatics end-users (who are often not comfortable working with APIs) to have a file format converter for formats supported in scikit-bio. We'd want to develop a scikit-bio Python API for file format conversions and then develop a simple CLI and/or GUI app to wrap this (this app would likely be separate from scikit-bio). This project would also likely involve the development of additional file format readers and writers for scikit-bio, to increase the power of this application and of scikit-bio.
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In bioinformatics, there are many defined file formats that represent very similar data. [scikit-bio] has a powerful I/O framework that enables users to load diverse formats into their relevant in-memory representations, regardless on input file format. It would be useful for many bioinformatics end-users (who are often not comfortable working with APIs) to have a file format converter for formats supported in scikit-bio. We'd want to develop a scikit-bio Python API for file format conversions and then develop a simple CLI and/or GUI app to wrap this (this app would likely be separate from scikit-bio). This project would also likely involve the development of additional file format readers and writers for scikit-bio, to increase the power of this application and of scikit-bio.
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| **Intensity** | Trivial - Easy - Moderate - Hard |
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| **Involves** | |
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| **Mentors** | [@foo][], [@bar][] |
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### Technical Details
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### Open Source Development Experience
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### First steps
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[scikit-bio]: http://scikit-bio.org/

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