README.md

causalpath_cytoscape_app

Instruction to Run the causalpath_cytoscape_app

Pre- Requisites

Java
Maven
Cytoscape

Step 1

Clone this repository into the local desktop.

Navigate to the directory "<your path to this directory>\causalpath_cytoscape_app\CausalPath Cytoscape App\" using cmd 
or open Git Bash in the mentioned directory.

Run the following commands

command 1.mvn compile
command 2.mvn clean install

A Build Success will be shown in the cmd and a jar file named causalpath_cytoscape_app-1.0 will be created in /target folder of the current directory.

Step 2

1.Copy the Jar file from the target folder into "C:\Users\<your PC_NAME>\CytoscapeConfiguration\3\apps\installed".
2.Open the Cytoscape App and click on Apps from the menu bar and then click on the CausalPath App.