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‎_quarto.yml

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href: setup.qmd
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- text: R and RStudio on your computer
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- text: R and RStudion on the JupyterHub

‎content/02-jupyterhub-setup-r.qmd

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* Click Start Server and accept defaults
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* Click the RStudio button. If you don't see it, click the blue button in the top left to open a new 'Launcher' window.
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![](content/img/jhub-launcher.png)
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![](https://nmfs-opensci.github.io/Quarto-Workshop-2024/content/img/jhub-launcher.png)
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## Access to the JupyterHub
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### GitHub username
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* Create a GitHub account (if you don’t already have one) at <https://github.com>. Advice for choosing a GitHub username: this is a professional username that you will use in work settings. GitHub accounts are not anonymous; this is for sharing work. Using your real name is common.
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* Write down your username and password; you will need to log in during the course!
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* Here is [a video](https://www.youtube.com/watch?v=nHXw4mGoqiE) showing the whole process
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* Log into GitHub.com. Authentication to the JupyterHub uses your username and being a member of the NMFS Openscapes GitHub org.
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### Get on JupyterHub
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Once you have submitted your GitHub username and have been accepted as a member on the nmfs-openscapes organization, you can log-into the JupyterHub.
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Once you have submitted your GitHub username and have been accepted as a member on the nmfs-openscapes organization, you can log-into the JupyterHub. For those who did the GitHub clinic, you should be good to go.
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<https://nmfs-openscapes.2i2c.cloud>
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* **Choose the default Py-R base geospatial image**. [Watch a video](https://youtu.be/o99jZWHqKi8) of the login process and basic JupyterHub orientation.
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* home directory is yours and no one else can see it.
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* To share files, you can connect to a GitHub repository or use the `shared` directory. Everyone can read and write to this directory. Please don't delete content that is not your own.
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This is a platform for training. Please do not put confidential info on here.

‎docs/coc.html

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<header id="title-block-header" class="quarto-title-block default"><nav class="quarto-page-breadcrumbs quarto-title-breadcrumbs d-none d-lg-block" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../index.html">Welcome</a></li><li class="breadcrumb-item"><a href="../setup.html">Set-up</a></li><li class="breadcrumb-item"><a href="../content/02-git-jupyter.html">Git-JupyterLab</a></li></ol></nav>
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‎docs/content/02-git-rstudio.html

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<nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../index.html">Welcome</a></li><li class="breadcrumb-item"><a href="../setup.html">Set-up</a></li><li class="breadcrumb-item"><a href="../content/02-git-rstudio.html">Git-RStudio</a></li></ol></nav>
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<header id="title-block-header" class="quarto-title-block default"><nav class="quarto-page-breadcrumbs quarto-title-breadcrumbs d-none d-lg-block" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../index.html">Welcome</a></li><li class="breadcrumb-item">Set-up</li><li class="breadcrumb-item"><a href="../content/02-git-rstudio.html">Git-RStudio</a></li></ol></nav>
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<header id="title-block-header" class="quarto-title-block default"><nav class="quarto-page-breadcrumbs quarto-title-breadcrumbs d-none d-lg-block" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../index.html">Welcome</a></li><li class="breadcrumb-item"><a href="../setup.html">Set-up</a></li><li class="breadcrumb-item"><a href="../content/02-git-rstudio.html">Git-RStudio</a></li></ol></nav>
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‎docs/content/02-git.html

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