RemoteDisconnected

[wwang-nmdp]

Tried to load a large fasta file (~73 Mib) which contains thousands of full-length HLA sequences for GFE annotation. It seems the server was disconnected without response. The program stopped.

`
Traceback (most recent call last):
File "/usr/local/lib/python3.6/dist-packages/urllib3/connectionpool.py", line 601, in urlopen
chunked=chunked)
File "/usr/local/lib/python3.6/dist-packages/urllib3/connectionpool.py", line 387, in _make_request
six.raise_from(e, None)
File "", line 2, in raise_from
File "/usr/local/lib/python3.6/dist-packages/urllib3/connectionpool.py", line 383, in _make_request
httplib_response = conn.getresponse()
File "/usr/lib/python3.6/http/client.py", line 1331, in getresponse
response.begin()
File "/usr/lib/python3.6/http/client.py", line 297, in begin
version, status, reason = self._read_status()
File "/usr/lib/python3.6/http/client.py", line 266, in _read_status
raise RemoteDisconnected("Remote end closed connection without"
http.client.RemoteDisconnected: Remote end closed connection without response

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/usr/local/bin/seq2gfe", line 94, in
main()
File "/usr/local/bin/seq2gfe", line 76, in main
features, gfe = gfe_maker.get_gfe(ann, loc)
File "/usr/local/lib/python3.6/dist-packages/pygfe/pygfe.py", line 123, in get_gfe
feature = self.api.create_feature(body=request)
File "/usr/local/lib/python3.6/dist-packages/pygfe/feature_client/apis/features_api.py", line 77, in create_feature
(data) = self.create_feature_with_http_info(**kwargs)
File "/usr/local/lib/python3.6/dist-packages/pygfe/feature_client/apis/features_api.py", line 152, in create_feature_with_http_info
_return_http_data_only=params.get('_return_http_data_only'))
File "/usr/local/lib/python3.6/dist-packages/pygfe/feature_client/api_client.py", line 334, in call_api
response_type, auth_settings, callback, _return_http_data_only)
File "/usr/local/lib/python3.6/dist-packages/pygfe/feature_client/api_client.py", line 157, in __call_api
post_params=post_params, body=body)
File "/usr/local/lib/python3.6/dist-packages/pygfe/feature_client/api_client.py", line 370, in request
body=body)
File "/usr/local/lib/python3.6/dist-packages/pygfe/feature_client/rest.py", line 216, in POST
body=body)
File "/usr/local/lib/python3.6/dist-packages/pygfe/feature_client/rest.py", line 150, in request
headers=headers)
File "/usr/local/lib/python3.6/dist-packages/urllib3/request.py", line 70, in request
**urlopen_kw)
File "/usr/local/lib/python3.6/dist-packages/urllib3/request.py", line 148, in request_encode_body
return self.urlopen(method, url, **extra_kw)
File "/usr/local/lib/python3.6/dist-packages/urllib3/poolmanager.py", line 321, in urlopen
response = conn.urlopen(method, u.request_uri, **kw)
File "/usr/local/lib/python3.6/dist-packages/urllib3/connectionpool.py", line 639, in urlopen
_stacktrace=sys.exc_info()[2])
File "/usr/local/lib/python3.6/dist-packages/urllib3/util/retry.py", line 357, in increment
raise six.reraise(type(error), error, _stacktrace)
File "/usr/local/lib/python3.6/dist-packages/urllib3/packages/six.py", line 685, in reraise
raise value.with_traceback(tb)
File "/usr/local/lib/python3.6/dist-packages/urllib3/connectionpool.py", line 601, in urlopen
chunked=chunked)
File "/usr/local/lib/python3.6/dist-packages/urllib3/connectionpool.py", line 387, in _make_request
six.raise_from(e, None)
File "", line 2, in raise_from
File "/usr/local/lib/python3.6/dist-packages/urllib3/connectionpool.py", line 383, in _make_request
httplib_response = conn.getresponse()
File "/usr/lib/python3.6/http/client.py", line 1331, in getresponse
response.begin()
File "/usr/lib/python3.6/http/client.py", line 297, in begin
version, status, reason = self._read_status()
File "/usr/lib/python3.6/http/client.py", line 266, in _read_status
raise RemoteDisconnected("Remote end closed connection without"
urllib3.exceptions.ProtocolError: ('Connection aborted.', RemoteDisconnected('Remote end closed connection without response',))
`