add autogenerated tests

Author: josephmje

nipype/interfaces/mrtrix3/tests/test_auto_DWIBiasCorrect.py

@@ -0,0 +1,76 @@
+# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
+from __future__ import unicode_literals
+from ..preprocess import DWIBiasCorrect
+
+
+def test_DWIBiasCorrect_inputs():
+    input_map = dict(
+        args=dict(argstr='%s', ),
+        bval_scale=dict(argstr='-bvalue_scaling %s', ),
+        environ=dict(
+            nohash=True,
+            usedefault=True,
+        ),
+        fsl_grad=dict(
+            argstr='-fslgrad %s %s',
+            xor=('mrtrix_grad', 'fsl_grad'),
+        ),
+        grad_file=dict(argstr='-grad %s', ),
+        grad_fsl=dict(argstr='-fslgrad %s %s', ),
+        in_bval=dict(),
+        in_bvec=dict(argstr='-fslgrad %s %s', ),
+        in_file=dict(
+            argstr='%s',
+            mandatory=True,
+            position=-2,
+        ),
+        in_mask=dict(argstr='-mask %s', ),
+        mrtrix_grad=dict(
+            argstr='-grad %s',
+            xor=('mrtrix_grad', 'fsl_grad'),
+        ),
+        nthreads=dict(
+            argstr='-nthreads %d',
+            nohash=True,
+        ),
+        out_bias=dict(
+            argstr='-bias %s',
+            genfile=True,
+            keep_extension=True,
+            name_source='in_file',
+            name_template='%s_biasfield',
+        ),
+        out_file=dict(
+            argstr='%s',
+            genfile=True,
+            keep_extension=True,
+            name_source='in_file',
+            name_template='%s_biascorr',
+            position=-1,
+        ),
+        use_ants=dict(
+            argstr='-ants',
+            usedefault=True,
+            xor=('use_ants', 'use_fsl'),
+        ),
+        use_fsl=dict(
+            argstr='-fsl',
+            min_ver='5.0.10',
+            xor=('use_ants', 'use_fsl'),
+        ),
+    )
+    inputs = DWIBiasCorrect.input_spec()
+
+    for key, metadata in list(input_map.items()):
+        for metakey, value in list(metadata.items()):
+            assert getattr(inputs.traits()[key], metakey) == value
+def test_DWIBiasCorrect_outputs():
+    output_map = dict(
+        out_bias=dict(),
+        out_file=dict(),
+    )
+    outputs = DWIBiasCorrect.output_spec()
+
+    for key, metadata in list(output_map.items()):
+        for metakey, value in list(metadata.items()):
+            assert getattr(outputs.traits()[key], metakey) == value

nipype/interfaces/mrtrix3/tests/test_auto_DWIDenoise.py

@@ -25,26 +25,36 @@ def test_DWIDenoise_inputs():
             argstr='-mask %s',
             position=1,
         ),
-        noise=dict(argstr='-noise %s', ),
         nthreads=dict(
             argstr='-nthreads %d',
             nohash=True,
         ),
         out_file=dict(
             argstr='%s',
+            genfile=True,
             keep_extension=True,
             name_source='in_file',
             name_template='%s_denoised',
             position=-1,
         ),
+        out_noisemap=dict(
+            argstr='-noise %s',
+            genfile=True,
+            keep_extension=True,
+            name_source='in_file',
+            name_template='%s_noisemap',
+        ),
     )
     inputs = DWIDenoise.input_spec()
 
     for key, metadata in list(input_map.items()):
         for metakey, value in list(metadata.items()):
             assert getattr(inputs.traits()[key], metakey) == value
 def test_DWIDenoise_outputs():
-    output_map = dict(out_file=dict(), )
+    output_map = dict(
+        out_file=dict(),
+        out_noisemap=dict(),
+    )
     outputs = DWIDenoise.output_spec()
 
     for key, metadata in list(output_map.items()):

nipype/interfaces/mrtrix3/tests/test_auto_MRDeGibbs.py

@@ -0,0 +1,66 @@
+# AUTO-GENERATED by tools/checkspecs.py - DO NOT EDIT
+from __future__ import unicode_literals
+from ..preprocess import MRDeGibbs
+
+
+def test_MRDeGibbs_inputs():
+    input_map = dict(
+        args=dict(argstr='%s', ),
+        axes=dict(
+            argstr='-axes %s',
+            maxlen=2,
+            minlen=2,
+            sep=',',
+            usedefault=True,
+        ),
+        bval_scale=dict(argstr='-bvalue_scaling %s', ),
+        environ=dict(
+            nohash=True,
+            usedefault=True,
+        ),
+        grad_file=dict(argstr='-grad %s', ),
+        grad_fsl=dict(argstr='-fslgrad %s %s', ),
+        in_bval=dict(),
+        in_bvec=dict(argstr='-fslgrad %s %s', ),
+        in_file=dict(
+            argstr='%s',
+            mandatory=True,
+            position=-2,
+        ),
+        maxW=dict(
+            argstr='-maxW %d',
+            usedefault=True,
+        ),
+        minW=dict(
+            argstr='-minW %d',
+            usedefault=True,
+        ),
+        nshifts=dict(
+            argstr='-nshifts %d',
+            usedefault=True,
+        ),
+        nthreads=dict(
+            argstr='-nthreads %d',
+            nohash=True,
+        ),
+        out_file=dict(
+            argstr='%s',
+            genfile=True,
+            keep_extension=True,
+            name_source='in_file',
+            name_template='%s_unr',
+            position=-1,
+        ),
+    )
+    inputs = MRDeGibbs.input_spec()
+
+    for key, metadata in list(input_map.items()):
+        for metakey, value in list(metadata.items()):
+            assert getattr(inputs.traits()[key], metakey) == value
+def test_MRDeGibbs_outputs():
+    output_map = dict(out_file=dict(), )
+    outputs = MRDeGibbs.output_spec()
+
+    for key, metadata in list(output_map.items()):
+        for metakey, value in list(metadata.items()):
+            assert getattr(outputs.traits()[key], metakey) == value