Merge pull request #1447 from effigies/chore/lock-envs

chore(tox): Use lock runners for more tests

Author: effigies

.github/dependabot.yml

@@ -8,3 +8,16 @@ updates:
       actions-infrastructure:
         patterns:
           - "actions/*"
+    cooldown:
+      default-days: 14
+  - package-ecosystem: uv
+    directory: "/"
+    labels: ["dependencies"]
+    schedule:
+      interval: monthly
+    groups:
+      python:
+        patterns:
+          - "*"
+    cooldown:
+      default-days: 14

pyproject.toml

@@ -58,15 +58,15 @@ dicomfs = ["nibabel[dicom]", "pillow >=8.4"]
 minc2 = ["h5py >=3.5"]
 spm = ["scipy >=1.8"]
 viewers = ["matplotlib >=3.5"]
-zstd = ["backports.zstd; python_version<'3.14'"]
+zstd = ["backports.zstd >=1.1; python_version<'3.14'"]
 # For doc and test, make easy to use outside of tox
 # tox should use these with extras instead of duplicating
 doc = [
-  "sphinx",
+  "sphinx >=7.4",
   "matplotlib>=3.5",
-  "numpydoc",
-  "texext",
-  "tomli; python_version < '3.11'",
+  "numpydoc >=1.9",
+  "texext >=0.6.8",
+  "tomli >=2.3; python_version < '3.11'",
 ]
 test = [
   "pytest >=8",
@@ -77,10 +77,18 @@ test = [
   "coverage[toml]>=7.2",
 ]
 # Remaining: Simpler to centralize in tox
-dev = ["tox"]
-doctest = ["tox"]
-style = ["tox"]
-typing = ["tox"]
+dev = []
+doctest = []
+style = []
+typing = []
+
+[dependency-groups]
+style = [
+  "ruff >=0.14.0",
+]
+typecheck = [
+  "mypy >=1.15",
+]
 
 [tool.hatch.build.targets.sdist]
 exclude = [

tox.ini

@@ -109,7 +109,7 @@ commands =
     --durations=20 --durations-min=1.0 \
     --pyargs nibabel {posargs:-n auto}
 
-[testenv:py3{9,10,11,12,13,13t,14,14t}-full-{x,arm}64]
+[testenv:py3{9,10,11,12,13,13t,14,14t}-{full,none}-{x,arm}64]
 runner = uv-venv-lock-runner
 
 [testenv:install]
@@ -131,32 +131,26 @@ commands =
 [testenv:doctest]
 description = Run doctests in documentation site
 labels = docs
+runner = uv-venv-lock-runner
 allowlist_externals = make
 extras =
   doc
   test
 commands =
   make -C doc doctest
 
-[testenv:style]
+[testenv:style{,-fix}]
 description = Check our style guide
 labels = check
-deps =
-  ruff>=0.3.0
-skip_install = true
-commands =
-  ruff check --diff nibabel
-  ruff format --diff nibabel
-
-[testenv:style-fix]
-description = Auto-apply style guide to the extent possible
-labels = pre-release
-deps =
-  ruff
+runner = uv-venv-lock-runner
+dependency_groups =
+  style
 skip_install = true
 commands =
-  ruff check --fix nibabel
-  ruff format nibabel
+  !fix: ruff check --diff nibabel
+  !fix: ruff format --diff nibabel
+  fix: ruff check --fix nibabel
+  fix: ruff format nibabel
 
 [testenv:spellcheck]
 description = Check spelling
@@ -170,17 +164,12 @@ commands =
 [testenv:typecheck]
 description = Check type consistency
 labels = check
-deps =
-  mypy
-  pytest
-  types-setuptools
-  types-Pillow
-  pydicom
-  numpy
-  backports.zstd
-  importlib_resources
-  typing_extensions
-skip_install = true
+runner = uv-venv-lock-runner
+dependency_groups =
+  typecheck
+extras =
+  all
+  test
 commands =
   mypy nibabel