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modules.json
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{
"name": "nf-core/pacvar",
"homePage": "https://github.com/nf-core/pacvar",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bcftools/index": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bcftools/sort": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"deepvariant": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"deepvariant/callvariants": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"deepvariant/makeexamples": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"deepvariant/postprocessvariants": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"deepvariant/rundeepvariant": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"],
"patch": "modules/nf-core/deepvariant/rundeepvariant/deepvariant-rundeepvariant.diff"
},
"fastqc": {
"branch": "master",
"git_sha": "08108058ea36a63f141c25c4e75f9f872a5b2296",
"installed_by": ["modules"]
},
"gatk4/haplotypecaller": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"hiphase": {
"branch": "master",
"git_sha": "d29fcb4ec1274a2982b86225f23fd895c1d7db2f",
"installed_by": ["modules"],
"patch": "modules/nf-core/hiphase/hiphase.diff"
},
"lima": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "f0719ae309075ae4a291533883847c3f7c441dad",
"installed_by": ["modules"]
},
"pbmm2/align": {
"branch": "master",
"git_sha": "7f3ea5df279fa051bec9bade1798a58ba35b1196",
"installed_by": ["modules"],
"patch": "modules/nf-core/pbmm2/align/pbmm2-align.diff"
},
"pbsv/call": {
"branch": "master",
"git_sha": "d29fcb4ec1274a2982b86225f23fd895c1d7db2f",
"installed_by": ["modules"]
},
"pbsv/discover": {
"branch": "master",
"git_sha": "6c32d3749967fb03fc83ae5e7ea72ecf26b90f56",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/index/samtools-index.diff"
},
"samtools/sort": {
"branch": "master",
"git_sha": "b7800db9b069ed505db3f9d91b8c72faea9be17b",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/sort/samtools-sort.diff"
},
"tabix/bgzip": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"trgt/genotype": {
"branch": "master",
"git_sha": "484afd16770cf3c466a6c385e33746c877656663",
"installed_by": ["modules"]
},
"trgt/plot": {
"branch": "master",
"git_sha": "c3fe6e90faa4c02f6ce451e7418a87b883ff4ea1",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "51ae5406a030d4da1e49e4dab49756844fdd6c7a",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
"installed_by": ["subworkflows"]
}
}
}
}
}
}