chore: release 3.11.0

Author: ivan-aksamentov

Diff for: CHANGELOG.md

@@ -1,3 +1,20 @@
+## 3.11.0
+
+### Alignment presets
+
+Nextclade CLI now supports `--alignment-preset` argument, which switches between pre-defined sets of alignment parameters. Currently available values are:
+  - `default`: Suitable for aligning very similar sequences (this is the default)
+  - `high-diversity`: Suitable for more diverse viruses
+  - `short-sequences`: Suitable for short and partial sequences
+
+This is an experimental feature. Presets are subject to change.
+
+
+### Fix crash with empty reference sequence
+
+Nextclade crashed when an empty reference sequence file is provided. Now Nextclade checks for this condition and reports a useful error message instead.
+
+
 ## 3.10.2
 
 ### Correctly handle comments in GFF3 files

Diff for: Cargo.lock

@@ -12,7 +12,7 @@ exclude = [
 
 [workspace.package]
 name = "nextclade"
-version = "3.10.2"
+version = "3.11.0"
 description = "Alignment, mutation calling, phylogenetic placement, clade assignment and quality control checks for viral genetic sequences. Library module."
 repository = "https://github.com/nextstrain/nextclade"
 documentation = "https://docs.nextstrain.org/projects/nextclade/en/stable/"

Diff for: Cargo.toml

@@ -1,6 +1,6 @@
 {
   "name": "@nextstrain/nextclade-web",
-  "version": "3.10.2",
+  "version": "3.11.0",
   "description": "Clade assignment, mutation calling, and sequence quality checks",
   "homepage": "https://clades.nextstrain.org",
   "repository": {