docker-compose.yml

services:

  api:
    image: "neurobagel/api:${NB_NAPI_TAG:-latest}"
    profiles:
      - "local_node"
      - "full_stack"
    ports:
      - "${NB_NAPI_PORT_HOST:-8000}:8000"
    environment:
      NB_GRAPH_USERNAME: ${NB_GRAPH_USERNAME}
      NB_GRAPH_ADDRESS: graph
      NB_GRAPH_PORT: 7200
      NB_GRAPH_DB: ${NB_GRAPH_DB:-repositories/my_db}
      NB_RETURN_AGG: ${NB_RETURN_AGG:-true}
      NB_MIN_CELL_SIZE: ${NB_MIN_CELL_SIZE:-0}
      NB_API_PORT: 8000
      NB_NAPI_BASE_PATH: ${NB_NAPI_BASE_PATH}
      NB_API_ALLOWED_ORIGINS: ${NB_NAPI_ALLOWED_ORIGINS:-"*"}
      NB_ENABLE_AUTH: ${NB_ENABLE_AUTH:-false}
      NB_QUERY_CLIENT_ID: ${NB_QUERY_CLIENT_ID}
    volumes:
      - "./scripts/api_entrypoint.sh:/usr/src/api_entrypoint.sh"
    entrypoint:
      - "/usr/src/api_entrypoint.sh"
    secrets:
      - db_user_password

  graph:
    image: "ontotext/graphdb:10.3.1"
    profiles:
      - "local_node"
      - "full_stack"
    volumes:
      - "graphdb_home:/opt/graphdb/home"
      - "./scripts:/usr/src/neurobagel/scripts"
      - "./vocab:/usr/src/neurobagel/vocab"
      - "${LOCAL_GRAPH_DATA:-./data}:/data"
    ports:
      - "${NB_GRAPH_PORT_HOST:-7200}:7200"
    environment:
      NB_GRAPH_USERNAME: ${NB_GRAPH_USERNAME}
      NB_GRAPH_PORT: 7200
      NB_GRAPH_DB: ${NB_GRAPH_DB:-repositories/my_db}
    entrypoint:
      - "/usr/src/neurobagel/scripts/setup.sh"
    working_dir: "/usr/src/neurobagel/scripts"
    secrets:
      - db_admin_password
      - db_user_password

  federation:
    image: "neurobagel/federation_api:${NB_FAPI_TAG:-latest}"
    profiles:
      - "local_federation"
      - "full_stack"
    ports:
      - "${NB_FAPI_PORT_HOST:-8080}:8000"
    volumes:
      - "./local_nb_nodes.json:/usr/src/local_nb_nodes.json:ro"
    environment:
      NB_API_PORT: 8000
      NB_FAPI_BASE_PATH: ${NB_FAPI_BASE_PATH}
      NB_FEDERATE_REMOTE_PUBLIC_NODES: ${NB_FEDERATE_REMOTE_PUBLIC_NODES:-True}
      NB_ENABLE_AUTH: ${NB_ENABLE_AUTH:-false}
      NB_QUERY_CLIENT_ID: ${NB_QUERY_CLIENT_ID}

  query_federation:
    image: "neurobagel/query_tool:${NB_QUERY_TAG:-latest}"
    profiles:
      - "local_federation"
      - "full_stack"
    ports:
      - "${NB_QUERY_PORT_HOST:-3000}:5173"
    environment:
      NB_API_QUERY_URL: ${NB_API_QUERY_URL}
      NB_QUERY_APP_BASE_PATH: ${NB_QUERY_APP_BASE_PATH:-/}
      NB_ENABLE_AUTH: ${NB_ENABLE_AUTH:-false}
      NB_QUERY_CLIENT_ID: ${NB_QUERY_CLIENT_ID}
      NB_QUERY_HEADER_SCRIPT: ${NB_QUERY_HEADER_SCRIPT}

secrets:
  db_admin_password:
    file: ${NB_GRAPH_SECRETS_PATH:-./secrets}/NB_GRAPH_ADMIN_PASSWORD.txt
  db_user_password:
    file: ${NB_GRAPH_SECRETS_PATH:-./secrets}/NB_GRAPH_PASSWORD.txt

volumes:
  graphdb_home: