diff --git a/README.md b/README.md index d7916f7f..2c748c4c 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ ![Rail-RNA logo](https://github.com/nellore/rail/blob/master/assets/railrnalogodark.png) ==== -This is the official repo for Rail-RNA, software for RNA-seq analysis. [Download](https://github.com/nellore/rail/raw/v0.1.6b/releases/install_rail-rna-0.1.6b) the latest stable release. **Ask questions in the repo's Gitter: [![Join the chat at https://gitter.im/nellore/rail](https://badges.gitter.im/Join%20Chat.svg)](https://gitter.im/nellore/rail?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge) .** +This is the official repo for Rail-RNA, software for RNA-seq analysis. [Download](https://github.com/nellore/rail/raw/v0.1.6c/releases/install_rail-rna-0.1.6c) the latest stable release. **Ask questions in the repo's Gitter: [![Join the chat at https://gitter.im/nellore/rail](https://badges.gitter.im/Join%20Chat.svg)](https://gitter.im/nellore/rail?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge) .** Get interested ----- @@ -23,21 +23,21 @@ Read the [preprint](http://biorxiv.org/content/early/2015/05/07/019067) for more Get set up ----- -Start with a recent (>= 2009) Mac OS or Linux box. Download [`install_rail-rna-0.1.6b`](https://github.com/nellore/rail/raw/v0.1.6b/releases/install_rail-rna-0.1.6b), change to the directory containing it, and make the installer executable with +Start with a recent (>= 2009) Mac OS or Linux box. Download [`install_rail-rna-0.1.6c`](https://github.com/nellore/rail/raw/v0.1.6c/releases/install_rail-rna-0.1.6c), change to the directory containing it, and make the installer executable with ``` -chmod +x install_rail-rna-0.1.6b +chmod +x install_rail-rna-0.1.6c ``` Now run ``` -sudo ./install_rail-rna-0.1.6b +sudo ./install_rail-rna-0.1.6c ``` to install for all users or ``` -./install_rail-rna-0.1.6b +./install_rail-rna-0.1.6c ``` to install for just you. Check ``` -./install_rail-rna-0.1.6b -h +./install_rail-rna-0.1.6c -h ``` for more installation options. If the executable doesn't work, you may need [Python](http://www.python.org). You'll also need Bowtie 1 and 2 indexes of the appropriate genome assembly if you will be running Rail-RNA in either its single-computer (local) or IPython Parallel (parallel) modes. The easiest way to get these is by downloading an [Illumina iGenome](http://support.illumina.com/sequencing/sequencing_software/igenome.html). If running Rail-RNA on EMR (elastic mode) and aligning to hg19, the assembly can be specified at the command line with the `-a` parameter. More assemblies are on their way.